Guide to the Human Genome
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Name: EMX2 Sequence: fasta or formatted (252aa) NCBI GI: 14149611
Description:

empty spiracles homeobox 2

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         27           6
 C cysteine            0.4          1           1
 D aspartate           3.6          9           2
 E glutamate           5.2         13           3
 F phenylalanine       5.2         13           1
 G glycine             3.2          8           1
 H histidine           6.0         15           2
 I isoleucine          3.2          8           1
 K lysine              5.6         14           3
 L leucine             7.9         20           2
 M methionine          0.4          1           1
 N asparagine          4.0         10           1
 P proline            10.7         27           3
 Q glutamine           4.8         12           2
 R arginine            7.1         18           2
 S serine              9.9         25           2
 T threonine           4.0         10           1
 V valine              4.8         12           2
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   empty spiracles homeobox 2 
EMX1                  0.579   empty spiracles homolog 1 
TLX1                  0.119   T-cell leukemia homeobox 1 
TLX3                  0.117   T-cell leukemia homeobox 3 
VAX2                  0.115   ventral anterior homeobox 2 
HOXD4                 0.115   homeobox D4 
NKX6-1                0.115   NK6 transcription factor related, locus 1 
VAX1                  0.111   ventral anterior homeobox 1 isoform a 
TLX2                  0.111   T-cell leukemia homeobox 2 
MNX1                  0.109   homeo box HB9 
NKX1-2                0.105   NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
HOXA3                 0.103   homeobox A3 isoform a 
HOXA3                 0.103   homeobox A3 isoform a 
NKX6-2                0.103   NK6 transcription factor related, locus 2 
NKX1-1                0.103   PREDICTED: NK1 homeobox 1 
NKX1-1                0.103   PREDICTED: NK1 homeobox 1 
NKX1-1                0.103   PREDICTED: HPX-153 homeobox 
HOXB4                 0.101   homeobox B4 
BARHL1                0.101   BarH-like homeobox 1 
BARHL2                0.101   BarH-like homeobox 2 
GBX1                  0.099   gastrulation brain homeo box 1 
HOXB5                 0.099   homeobox B5 
HOXD8                 0.097   homeobox D8 
HMX1                  0.097   homeo box (H6 family) 1 
GBX2                  0.097   gastrulation brain homeo box 2 
DLX6                  0.095   distal-less homeobox 6 
HMX3                  0.095   H6 family homeobox 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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