Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EMX1 Sequence: fasta or formatted (290aa) NCBI GI: 94536800
Description:

empty spiracles homolog 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         42           5
 C cysteine            0.7          2           1
 D aspartate           2.4          7           1
 E glutamate           5.5         16           3
 F phenylalanine       5.2         15           2
 G glycine            10.0         29           4
 H histidine           4.5         13           2
 I isoleucine          1.7          5           1
 K lysine              5.2         15           3
 L leucine             8.6         25           3
 M methionine          1.0          3           1
 N asparagine          2.8          8           1
 P proline             8.6         25           2
 Q glutamine           4.5         13           1
 R arginine            7.9         23           2
 S serine              5.9         17           1
 T threonine           4.5         13           1
 V valine              3.8         11           2
 W tryptophan          1.0          3           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   empty spiracles homolog 1 
EMX2                  0.504   empty spiracles homeobox 2 
MNX1                  0.128   homeo box HB9 
MSX1                  0.104   msh homeobox 1 
TLX1                  0.104   T-cell leukemia homeobox 1 
TLX2                  0.100   T-cell leukemia homeobox 2 
VAX1                  0.098   ventral anterior homeobox 1 isoform a 
VAX2                  0.096   ventral anterior homeobox 2 
TLX3                  0.095   T-cell leukemia homeobox 3 
EN1                   0.095   engrailed homeobox 1 
HHEX                  0.095   hematopoietically expressed homeobox 
NKX6-1                0.093   NK6 transcription factor related, locus 1 
NKX6-2                0.093   NK6 transcription factor related, locus 2 
EN2                   0.093   engrailed homeobox 2 
BARHL1                0.091   BarH-like homeobox 1 
BARHL2                0.091   BarH-like homeobox 2 
HOXA4                 0.089   homeobox A4 
BSX                   0.089   brain specific homeobox 
HOXB2                 0.089   homeobox B2 
NKX1-2                0.088   NK1 homeobox 2 
NKX1-2                0.088   PREDICTED: NK1 homeobox 2 
NKX1-1                0.088   PREDICTED: NK1 homeobox 1 
NKX1-2                0.088   PREDICTED: NK1 homeobox 2 
NKX1-2                0.088   PREDICTED: NK1 homeobox 2 
DLX2                  0.086   distal-less homeobox 2 
NKX1-1                0.086   PREDICTED: NK1 homeobox 1 
NKX1-1                0.086   PREDICTED: HPX-153 homeobox 
BARX1                 0.086   BarH-like homeobox 1 
NOTO                  0.086   notochord homeobox 
HOXA1                 0.084   homeobox A1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press