Guide to the Human Genome
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Name: BARX1 Sequence: fasta or formatted (254aa) NCBI GI: 153218470
Description:

BarH-like homeobox 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         33           7
 C cysteine            0.8          2           1
 D aspartate           2.4          6           1
 E glutamate           8.7         22           2
 F phenylalanine       3.1          8           1
 G glycine            10.2         26           3
 H histidine           2.0          5           1
 I isoleucine          2.0          5           1
 K lysine              8.3         21           2
 L leucine            11.4         29           2
 M methionine          1.6          4           1
 N asparagine          0.8          2           1
 P proline            10.2         26           2
 Q glutamine           4.7         12           1
 R arginine            7.1         18           2
 S serine              5.5         14           2
 T threonine           3.5          9           1
 V valine              2.8          7           1
 W tryptophan          0.8          2           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   BarH-like homeobox 1 
BARX2                 0.292   BarH-like homeobox 2 
BSX                   0.144   brain specific homeobox 
MNX1                  0.126   homeo box HB9 
BARHL2                0.123   BarH-like homeobox 2 
BARHL1                0.123   BarH-like homeobox 1 
DLX1                  0.121   distal-less homeobox 1 isoform 1 
HLX                   0.117   H2.0-like homeobox 
NKX1-1                0.113   PREDICTED: NK1 homeobox 1 
NKX1-1                0.113   PREDICTED: NK1 homeobox 1 
GBX1                  0.113   gastrulation brain homeo box 1 
HOXA4                 0.113   homeobox A4 
TLX1                  0.113   T-cell leukemia homeobox 1 
NKX1-1                0.111   PREDICTED: HPX-153 homeobox 
DLX6                  0.111   distal-less homeobox 6 
DLX4                  0.111   distal-less homeobox 4 isoform a 
DLX4                  0.109   distal-less homeobox 4 isoform b 
DLX5                  0.107   distal-less homeobox 5 
DLX2                  0.107   distal-less homeobox 2 
GBX2                  0.107   gastrulation brain homeo box 2 
DLX3                  0.107   distal-less homeobox 3 
MSX2                  0.107   msh homeobox 2 
NKX1-2                0.105   NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
NKX1-2                0.105   PREDICTED: NK1 homeobox 2 
NKX6-1                0.103   NK6 transcription factor related, locus 1 
EMX1                  0.101   empty spiracles homolog 1 
DBX2                  0.101   developing brain homeobox 2 
HOXB4                 0.099   homeobox B4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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