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Search of human proteins with 4505777
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
(457 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 967 0.0
gi|13435397 PHD finger protein 1 isoform b [Homo sapiens] 754 0.0
gi|6678764 metal response element binding transcription factor 2... 390 e-108
gi|58331161 PHD finger protein 19 isoform a [Homo sapiens] 380 e-105
gi|58331163 PHD finger protein 19 isoform b [Homo sapiens] 133 4e-31
gi|117190334 PHD finger protein 16 [Homo sapiens] 54 2e-07
gi|7662006 PHD finger protein 16 [Homo sapiens] 54 2e-07
gi|40556370 PHD finger protein 15 [Homo sapiens] 52 9e-07
gi|215599585 integrator complex subunit 12 [Homo sapiens] 52 1e-06
gi|21361851 integrator complex subunit 12 [Homo sapiens] 52 1e-06
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 51 2e-06
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 51 2e-06
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 50 4e-06
gi|19923609 PHD finger protein 17 short isoform [Homo sapiens] 50 6e-06
gi|40556393 PHD finger protein 17 long isoform [Homo sapiens] 50 6e-06
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 49 7e-06
gi|24308203 CSRP2 binding protein isoform a [Homo sapiens] 48 2e-05
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 47 4e-05
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 45 2e-04
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 44 2e-04
gi|169209545 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|169210556 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|169210041 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens] 43 5e-04
gi|134133279 SP140 nuclear body protein-like [Homo sapiens] 43 5e-04
gi|239751037 PREDICTED: hypothetical protein [Homo sapiens] 43 7e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 41 0.003
gi|47419911 transcriptional intermediary factor 1 alpha isoform ... 41 0.003
gi|47419909 transcriptional intermediary factor 1 alpha isoform ... 41 0.003
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 41 0.003
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 967 bits (2501), Expect = 0.0
Identities = 457/457 (100%), Positives = 457/457 (100%)
Query: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
Sbjct: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
Query: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
Sbjct: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
Query: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
Sbjct: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
Query: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
Sbjct: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
Query: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
Sbjct: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
Query: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTS 360
RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTS
Sbjct: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTS 360
Query: 361 PGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAEGAGSSAEGTAAAPSGCLLPST 420
PGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAEGAGSSAEGTAAAPSGCLLPST
Sbjct: 361 PGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGAEGAGSSAEGTAAAPSGCLLPST 420
Query: 421 LLPAPQGPLGTVDPQTGHPWNFTLVSPQTSLKVPPTR 457
LLPAPQGPLGTVDPQTGHPWNFTLVSPQTSLKVPPTR
Sbjct: 421 LLPAPQGPLGTVDPQTGHPWNFTLVSPQTSLKVPPTR 457
>gi|13435397 PHD finger protein 1 isoform b [Homo sapiens]
Length = 567
Score = 754 bits (1946), Expect = 0.0
Identities = 357/375 (95%), Positives = 359/375 (95%), Gaps = 1/375 (0%)
Query: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV
Sbjct: 1 MAQPPRLSRSGASSLWDPASPAPTSGPRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREV 60
Query: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV
Sbjct: 61 CLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHV 120
Query: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH
Sbjct: 121 PRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGH 180
Query: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG
Sbjct: 181 LSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGG 240
Query: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE
Sbjct: 241 PEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDREILPFTSENWDSLLLGELSDTPKGE 300
Query: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTS 360
RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALT + P G+G
Sbjct: 301 RSSKLLSALNSHKDRFISGREIKKRKCLFGLHARMPPPVEPPTGDGALT-SFPSGQGPGG 359
Query: 361 PGEAPEAGARAPEEE 375
P R PE E
Sbjct: 360 GVSRPLGKRRRPEPE 374
>gi|6678764 metal response element binding transcription factor 2
[Homo sapiens]
Length = 593
Score = 390 bits (1001), Expect = e-108
Identities = 178/311 (57%), Positives = 220/311 (70%)
Query: 27 PRPRLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGE 86
P + EGQDVLARW+DGL YLGTIKK++ ++ C + FED S+ VLWKDI A
Sbjct: 42 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDIQTGATGSG 101
Query: 87 ELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
E++C +C+ E N +V C+KC YHQ CH P + W+CRQCVFA TK
Sbjct: 102 EMVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 161
Query: 147 RGGALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRS 206
RGGALKKGP A+A+ MK +LPY + L+WDAGH +N QQ YCYCGGPG+W LKMLQC
Sbjct: 162 RGGALKKGPNAKALQVMKQTLPYSVADLEWDAGHKTNVQQCYCYCGGPGDWYLKMLQCCK 221
Query: 207 CLQWFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCC 266
C QWFHEAC QCL KP+L+GDRFY F C VC GPE ++RL L+WVD+AHL LY+LSV
Sbjct: 222 CKQWFHEACVQCLQKPMLFGDRFYTFICSVCSSGPEYLKRLPLQWVDIAHLCLYNLSVIH 281
Query: 267 KKKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRK 326
KKKYFD + E++ + +ENWD L GEL+DTPK ER +L ALN +K F+SG+EIKK+K
Sbjct: 282 KKKYFDSELELMTYINENWDRLHPGELADTPKSERYEHVLEALNDYKTMFMSGKEIKKKK 341
Query: 327 CLFGLHARMPP 337
LFGL R+PP
Sbjct: 342 HLFGLRIRVPP 352
>gi|58331161 PHD finger protein 19 isoform a [Homo sapiens]
Length = 580
Score = 380 bits (977), Expect = e-105
Identities = 181/351 (51%), Positives = 236/351 (67%), Gaps = 15/351 (4%)
Query: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGG 149
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A ++GG
Sbjct: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVRKGG 158
Query: 150 ALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQ 209
ALKKG AR + +K+ L Y + L+WD+ H +N+QQ YCYCGGPGEW L+MLQC C Q
Sbjct: 159 ALKKGAIARTLQAVKMVLSYQPEELEWDSPHRTNQQQCYCYCGGPGEWYLRMLQCYRCRQ 218
Query: 210 WFHEACTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKK 269
WFHEACTQCL++P+++GDRFY F C VC GPE + RL LRWVDV HL LY+L V KKK
Sbjct: 219 WFHEACTQCLNEPMMFGDRFYLFFCSVCNQGPEYIERLPLRWVDVVHLALYNLGVQSKKK 278
Query: 270 YFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLF 329
YFDF+ EIL F + +W+ L LG+L+ TP +R LL+ALNS+K RF+ G+EIKK+KC+F
Sbjct: 279 YFDFE-EILAFVNHHWELLQLGKLTSTPVTDRGPHLLNALNSYKSRFLCGKEIKKKKCIF 337
Query: 330 GLHARMPPPVEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGES 380
L R+PP P G+ L G P + + E G+S
Sbjct: 338 RLRIRVPP--------------NPPGKLLPDKGLLPNENSASSELRKRGKS 374
>gi|58331163 PHD finger protein 19 isoform b [Homo sapiens]
Length = 207
Score = 133 bits (334), Expect = 4e-31
Identities = 60/117 (51%), Positives = 80/117 (68%)
Query: 30 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELL 89
+L EGQ VL RWTDGL YLG IK+V S+++ CLV FED+S++ VLWKDI A +PGEE
Sbjct: 39 KLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGVPGEEPK 98
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATK 146
C +C +T P N ++ C KC YHQ CH+P A + + T W CR+C+FA+A +
Sbjct: 99 CNICLGKTSGPLNEILICGKCGLGYHQQCHIPIAGSADQPLLTPWFCRRCIFALAVR 155
>gi|117190334 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P EG SW+CR CV I
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKVP---EG---SWLCRSCVLGIY 252
Query: 144 -----ATKRGGALK 152
K+GGALK
Sbjct: 253 PQCVLCPKKGGALK 266
>gi|7662006 PHD finger protein 16 [Homo sapiens]
Length = 823
Score = 54.3 bits (129), Expect = 2e-07
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P EG SW+CR CV I
Sbjct: 199 EDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKVP---EG---SWLCRSCVLGIY 252
Query: 144 -----ATKRGGALK 152
K+GGALK
Sbjct: 253 PQCVLCPKKGGALK 266
>gi|40556370 PHD finger protein 15 [Homo sapiens]
Length = 790
Score = 52.4 bits (124), Expect = 9e-07
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VCRS GN +V C+KC HQ C+ + + P SW+CR C +
Sbjct: 198 EDVVCDVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPT------GSWLCRTCALGVQ 251
Query: 144 -----ATKRGGALK 152
KRGGALK
Sbjct: 252 PKCLLCPKRGGALK 265
>gi|215599585 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 88 LLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPR-APAPGEGEGTSWVCRQC 139
L C VCR V GN+LV C++C + YH+DCH P+ W C +C
Sbjct: 160 LACVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|21361851 integrator complex subunit 12 [Homo sapiens]
Length = 462
Score = 51.6 bits (122), Expect = 1e-06
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 88 LLCCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPR-APAPGEGEGTSWVCRQC 139
L C VCR V GN+LV C++C + YH+DCH P+ W C +C
Sbjct: 160 LACVVCRQMMVASGNQLVECQECHNLYHRDCHKPQVTDKEANDPRLVWYCARC 212
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 80 PAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQ 138
P AL E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR+
Sbjct: 266 PNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRR 319
Query: 139 CV--------FAIATKRGGALKK 153
C+ A+ +GGA K+
Sbjct: 320 CLQSPSRAVDCALCPNKGGAFKQ 342
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 51.2 bits (121), Expect = 2e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 15/83 (18%)
Query: 80 PAALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQ 138
P AL E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR+
Sbjct: 266 PNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRR 319
Query: 139 CV--------FAIATKRGGALKK 153
C+ A+ +GGA K+
Sbjct: 320 CLQSPSRAVDCALCPNKGGAFKQ 342
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 50.1 bits (118), Expect = 4e-06
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 16/130 (12%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGG 149
C VC + +L+ C KCR++YH +C P P + W+C +CV K G
Sbjct: 1482 CHVCGRQHQAT-KQLLECNKCRNSYHPECLGPNYPTKPTKKKKVWICTKCV---RCKSCG 1537
Query: 150 ALKKGPYARAMLGMKLSLPYGLKGLDWDAGHLSNRQQSYC----YCGGPGEWNLKMLQCR 205
+ G A SL + L + ++C C ++ KM+QC
Sbjct: 1538 STTPGKGWDAQWSHDFSLCHDCAKL--------FAKGNFCPLCDKCYDDDDYESKMMQCG 1589
Query: 206 SCLQWFHEAC 215
C +W H C
Sbjct: 1590 KCDRWVHSKC 1599
Score = 31.6 bits (70), Expect = 1.6
Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 215 CTQCLSKPLLYGDRFYEFECCVCRGGPEKVRRLQ-LRWVDVAHLVLYHLSVCCKKKYFDF 273
CT CL KP +G R + +CC K+R+ Q L+W+ + L + KKK
Sbjct: 1170 CTNCLDKPK-FGGRNIKKQCC-------KMRKCQNLQWMP-SKAYLQKQAKAVKKK---- 1216
Query: 274 DREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHA 333
E TSE DS + SS + + ++S + S RE K +
Sbjct: 1217 --EKKSKTSEKKDS------------KESSVVKNVVDSSQKPTPSAREDPAPK---KSSS 1259
Query: 334 RMPP--PVEPPTGDGALTRAGPWGRGLTSP 361
PP PVE + +G ++ GP + T+P
Sbjct: 1260 EPPPRKPVEEKSEEGNVSAPGPESKQATTP 1289
>gi|19923609 PHD finger protein 17 short isoform [Homo sapiens]
Length = 509
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VC+S GN +V C+KC HQ C+ + + P EG SW+CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVP---EG---SWLCRTCALGVQ 255
Query: 144 -----ATKRGGALK 152
K+GGA+K
Sbjct: 256 PKCLLCPKKGGAMK 269
>gi|40556393 PHD finger protein 17 long isoform [Homo sapiens]
Length = 842
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 13/74 (17%)
Query: 86 EELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCVFAI- 143
E+++C VC+S GN +V C+KC HQ C+ + + P EG SW+CR C +
Sbjct: 202 EDVVCDVCQSPDGEDGNEMVFCDKCNICVHQACYGILKVP---EG---SWLCRTCALGVQ 255
Query: 144 -----ATKRGGALK 152
K+GGA+K
Sbjct: 256 PKCLLCPKKGGAMK 269
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 49.3 bits (116), Expect = 7e-06
Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 104 LVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQCVFAIATKRGGALKKGPYARAMLGM 163
L+ CE+CRHAYH C P P + W+C CV K GA + +
Sbjct: 1265 LLECERCRHAYHPACLGPSYPTRATRKRRHWICSACV---RCKSCGATPGKNW-----DV 1316
Query: 164 KLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEAC 215
+ S Y L N C ++ KM+QC C W H C
Sbjct: 1317 EWSGDYSLCPRCTQLYEKGNYCPICTRCYEDNDYESKMMQCAQCDHWVHAKC 1368
>gi|24308203 CSRP2 binding protein isoform a [Homo sapiens]
Length = 782
Score = 47.8 bits (112), Expect = 2e-05
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 8/91 (8%)
Query: 204 CRSCLQWFHEACTQCLSKPLLY--GDRFYEFECCVCRG-GPEKVRRLQLRWVDVAHLVLY 260
C C +W + L + L Y GD F+ F C C G E+ RL+L W V L +Y
Sbjct: 77 CDKCQKWIPASQ---LREQLSYLKGDNFFRFTCSDCSADGKEQYERLKLTWQQVVMLAMY 133
Query: 261 HLSV--CCKKKYFDFDREILPFTSENWDSLL 289
+LS+ ++ YF + +I F ++W LL
Sbjct: 134 NLSLEGSGRQGYFRWKEDICAFIEKHWTFLL 164
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 47.0 bits (110), Expect = 4e-05
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 15/81 (18%)
Query: 82 ALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCV 140
+L E+ +CC+C N ++ C+ C A HQ+C+ VP P EG+ W+CR C+
Sbjct: 209 SLIDEDAVCCICMDGECQNSNVILFCDMCNLAVHQECYGVPYIP---EGQ---WLCRHCL 262
Query: 141 --------FAIATKRGGALKK 153
+ +GGA KK
Sbjct: 263 QSRARPADCVLCPNKGGAFKK 283
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 44.7 bits (104), Expect = 2e-04
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 334 RMPPPVEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSA 393
+ PPP PP A P G G P P A A PE EG G G S S
Sbjct: 33 QQPPPPPPP--------APPPGPGPAPPQHPPRAEALPPEAADEG--GPRGRLRSRDSSC 82
Query: 394 RAPGAEGAGSSAEGTAAAPSGCLLPSTLLPAPQGP 428
PG GA S+A+G+ G P P+GP
Sbjct: 83 GRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGP 117
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 44.3 bits (103), Expect = 2e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 82 ALPGEELLCCVCRSETVVPGNRLVSCEKCRHAYHQDCH-VPRAPAPGEGEGTSWVCRQCV 140
+L E+ CCVC + N ++ C+ C A HQ+C+ VP P EG+ W+CR C+
Sbjct: 207 SLIDEDAFCCVCLDDECHNSNVILFCDICNLAVHQECYGVPYIP---EGQ---WLCRCCL 260
Query: 141 FA--------IATKRGGALKK 153
+ + +GGA K+
Sbjct: 261 QSPSRPVDCILCPNKGGAFKQ 281
>gi|169209545 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 339 VEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGA 398
V+ P GD RA GR GE P G +P AE G A + R G
Sbjct: 33 VKSPPGDVHAARACAPGR---HSGEGPPQGNLSPSCPAEAGHG-------CASTGRQVGV 82
Query: 399 EGAGSSAEGTA-----AAPSGCLLPSTLLPAPQGPLGTVDPQTGHPW 440
GAGSS G A +A G P +LL A GP G+ + PW
Sbjct: 83 SGAGSSPSGPAPCVKCSAWVGTCFPLSLLQAAGGPAGSPNGFCPEPW 129
>gi|169210556 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 339 VEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGA 398
V+ P GD RA GR GE P G +P AE G A + R G
Sbjct: 33 VKSPPGDVHAARACAPGR---HSGEGPPQGNLSPSCPAEAGHG-------CASTGRQVGV 82
Query: 399 EGAGSSAEGTA-----AAPSGCLLPSTLLPAPQGPLGTVDPQTGHPW 440
GAGSS G A +A G P +LL A GP G+ + PW
Sbjct: 83 SGAGSSPSGPAPCVKCSAWVGTCFPLSLLQAAGGPAGSPNGFCPEPW 129
>gi|169210041 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 43.1 bits (100), Expect = 5e-04
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 339 VEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGA 398
V+ P GD RA GR GE P G +P AE G A + R G
Sbjct: 33 VKSPPGDVHAARACAPGR---HSGEGPPQGNLSPSCPAEAGHG-------CASTGRQVGV 82
Query: 399 EGAGSSAEGTA-----AAPSGCLLPSTLLPAPQGPLGTVDPQTGHPW 440
GAGSS G A +A G P +LL A GP G+ + PW
Sbjct: 83 SGAGSSPSGPAPCVKCSAWVGTCFPLSLLQAAGGPAGSPNGFCPEPW 129
>gi|217330601 SP140 nuclear body protein isoform 1 [Homo sapiens]
Length = 867
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQC 139
C VCR G L C+ C +H+DCH+P P E E T W C C
Sbjct: 693 CEVCRD-----GGELFCCDTCSRVFHEDCHIP----PVEAERTPWNCIFC 733
>gi|134133279 SP140 nuclear body protein-like [Homo sapiens]
Length = 580
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQC 139
C VCR G L C+ C +H+DCH+P P E E T W C C
Sbjct: 406 CEVCRD-----GGELFCCDTCSRVFHEDCHIP----PVESEKTPWNCIFC 446
>gi|239751037 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 42.7 bits (99), Expect = 7e-04
Identities = 37/107 (34%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 339 VEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEEEAEGESGGAGATLSSAQSARAPGA 398
V+ P GD RA GR GE P G +P AE G A + R G
Sbjct: 27 VKSPPGDVHAARACAPGR---HSGEGPPQGNLSPSCPAEAGHG-------CASTGRQVGV 76
Query: 399 EGAGSSAEGTA-----AAPSGCLLPSTLLPAPQGPLGTVDPQTGHPW 440
GAGSS G A +A G P +LL A GP G+ + PW
Sbjct: 77 SGAGSSPPGPAPCVKCSAWVGTCFPLSLLQAAGGPTGSPNGFCPEPW 123
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.8 bits (94), Expect = 0.003
Identities = 42/141 (29%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 319 GREIKKRKCLFGLHARMPP-----------PVEPPTGDGALTRAGPWGRGLTSPGEAPEA 367
G++++ R L L A+MPP P PP DG RAGP G PG +
Sbjct: 920 GKQLETR--LAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMG----EPGRPGQG 973
Query: 368 GARAP--------EEEAEGESGGAGATLSSAQSARA----PGAEGAGSSAEGTAAAPSGC 415
G P E A+G+ G G L PG G P G
Sbjct: 974 GLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGE 1033
Query: 416 LLPS--TLLPAPQGPLGTVDP 434
P+ LP P GP G DP
Sbjct: 1034 TGPAGHPGLPGPPGPPGQCDP 1054
>gi|47419911 transcriptional intermediary factor 1 alpha isoform a
[Homo sapiens]
Length = 1050
Score = 40.8 bits (94), Expect = 0.003
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQC 139
C VC++ G L+ CEKC +H CHVP GE W+C C
Sbjct: 829 CAVCQN-----GGELLCCEKCPKVFHLSCHVPTLTNFPSGE---WICTFC 870
>gi|47419909 transcriptional intermediary factor 1 alpha isoform b
[Homo sapiens]
Length = 1016
Score = 40.8 bits (94), Expect = 0.003
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 90 CCVCRSETVVPGNRLVSCEKCRHAYHQDCHVPRAPAPGEGEGTSWVCRQC 139
C VC++ G L+ CEKC +H CHVP GE W+C C
Sbjct: 795 CAVCQN-----GGELLCCEKCPKVFHLSCHVPTLTNFPSGE---WICTFC 836
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.8 bits (94), Expect = 0.003
Identities = 42/141 (29%), Positives = 51/141 (36%), Gaps = 31/141 (21%)
Query: 319 GREIKKRKCLFGLHARMPP-----------PVEPPTGDGALTRAGPWGRGLTSPGEAPEA 367
G++++ R L L A+MPP P PP DG RAGP G PG +
Sbjct: 1473 GKQLETR--LAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMG----EPGRPGQG 1526
Query: 368 GARAP--------EEEAEGESGGAGATLSSAQSARA----PGAEGAGSSAEGTAAAPSGC 415
G P E A+G+ G G L PG G P G
Sbjct: 1527 GLEGPSGPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGE 1586
Query: 416 LLPS--TLLPAPQGPLGTVDP 434
P+ LP P GP G DP
Sbjct: 1587 TGPAGHPGLPGPPGPPGQCDP 1607
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,658,485
Number of Sequences: 37866
Number of extensions: 1352371
Number of successful extensions: 9246
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 569
Number of HSP's that attempted gapping in prelim test: 8074
Number of HSP's gapped (non-prelim): 1694
length of query: 457
length of database: 18,247,518
effective HSP length: 106
effective length of query: 351
effective length of database: 14,233,722
effective search space: 4996036422
effective search space used: 4996036422
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.