Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100130884 Sequence: fasta or formatted (237aa) NCBI GI: 169210556
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {237aa} PREDICTED: hypothetical protein
alt prot {237aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         26           2
 C cysteine            5.9         14           1
 D aspartate           1.7          4           1
 E glutamate           3.0          7           1
 F phenylalanine       1.3          3           1
 G glycine            13.5         32           2
 H histidine           4.6         11           1
 I isoleucine          0.4          1           1
 K lysine              2.5          6           1
 L leucine             8.4         20           2
 M methionine          0.8          2           1
 N asparagine          1.3          3           1
 P proline            11.4         27           2
 Q glutamine           3.8          9           1
 R arginine            4.6         11           1
 S serine             12.7         30           3
 T threonine           4.6         11           1
 V valine              5.9         14           1
 W tryptophan          2.1          5           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130884          1.000   PREDICTED: hypothetical protein 
LOC100130884          0.990   PREDICTED: hypothetical protein 
LOC728804             0.888   PREDICTED: hypothetical protein 
PHF1                  0.037   PHD finger protein 1 isoform a 
LMTK3                 0.035   lemur tyrosine kinase 3 
HOXA13                0.031   homeobox A13 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.031   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.029   TBP-associated factor 4 
MN1                   0.027   meningioma  1 
GATA6                 0.025   GATA binding protein 6 
NOTCH3                0.025   Notch homolog 3 
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
FHOD3                 0.023   formin homology 2 domain containing 3 
SSBP4                 0.023   single stranded DNA binding protein 4 isoform b [Hom...
SSBP4                 0.023   single stranded DNA binding protein 4 isoform a [Hom...
ULK1                  0.021   Unc-51-like kinase 1 
GAK                   0.021   cyclin G associated kinase 
SPAG4                 0.021   sperm associated antigen 4 
TRIOBP                0.021   TRIO and F-actin binding protein isoform 6 
GPR153                0.021   G protein-coupled receptor 153 
LOC730456             0.021   PREDICTED: hypothetical protein 
OTUD5                 0.021   OTU domain containing 5 isoform a 
OTUD5                 0.021   OTU domain containing 5 isoform b 
OTUD5                 0.021   OTU domain containing 5 isoform b 
TMPRSS13              0.021   transmembrane protease, serine 13 
MUPCDH                0.021   mucin and cadherin-like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press