Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BRPF3 Sequence: fasta or formatted (1205aa) NCBI GI: 148727368
Description:

bromodomain and PHD finger containing, 3

Referenced in:

PHD Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         71           2
 C cysteine            2.4         29           2
 D aspartate           5.4         65           2
 E glutamate           9.8        118           7
 F phenylalanine       2.7         33           2
 G glycine             6.1         73           2
 H histidine           2.2         27           1
 I isoleucine          3.9         47           2
 K lysine              6.6         80           3
 L leucine            10.5        126           3
 M methionine          1.7         20           1
 N asparagine          3.3         40           1
 P proline             8.0         97           4
 Q glutamine           4.4         53           2
 R arginine            7.5         90           2
 S serine              7.9         95           2
 T threonine           3.7         45           2
 V valine              4.9         59           2
 W tryptophan          0.9         11           1
 Y tyrosine            2.2         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bromodomain and PHD finger containing, 3 
BRPF1                 0.454   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.451   bromodomain and PHD finger-containing protein 1 isof...
BRD1                  0.381   bromodomain containing protein 1 
PHF17                 0.078   PHD finger protein 17 long isoform 
PHF16                 0.076   PHD finger protein 16 
PHF16                 0.076   PHD finger protein 16 
PHF15                 0.071   PHD finger protein 15 
PHF17                 0.070   PHD finger protein 17 short isoform 
MLLT6                 0.058   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLLT10                0.057   myeloid/lymphoid or mixed-lineage leukemia transloca...
MLLT10                0.057   myeloid/lymphoid or mixed-lineage leukemia translocat...
KDM4B                 0.037   jumonji domain containing 2B 
PHF14                 0.037   PHD finger protein 14 isoform 2 
PHF14                 0.037   PHD finger protein 14 isoform 1 
KDM4A                 0.034   jumonji domain containing 2A 
KDM4C                 0.033   jumonji domain containing 2C isoform 2 
KDM4C                 0.033   jumonji domain containing 2C isoform 1 
BRD7                  0.027   bromodomain containing 7 
BRD9                  0.021   bromodomain containing 9 isoform 1 
KDM4C                 0.020   jumonji domain containing 2C isoform 3 
KDM4C                 0.020   jumonji domain containing 2C isoform 4 
ATAD2B                0.018   ATPase family, AAA domain containing 2B 
SMARCA4               0.018   SWI/SNF-related matrix-associated actin-dependent r...
ATAD2                 0.018   ATPase family, AAA domain containing 2 
BRD9                  0.017   bromodomain containing 9 isoform 2 
BRD4                  0.016   bromodomain-containing protein 4 isoform short 
BRD4                  0.016   bromodomain-containing protein 4 isoform long 
BAZ2B                 0.016   bromodomain adjacent to zinc finger domain, 2B [Homo...
TAF1                  0.015   TBP-associated factor 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press