Guide to the Human Genome
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Name: LOC100290184 Sequence: fasta or formatted (414aa) NCBI GI: 239749012
Description:

PREDICTED: hypothetical protein XP_002346880

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         20           2
 C cysteine            2.2          9           1
 D aspartate           6.0         25           2
 E glutamate           6.0         25           2
 F phenylalanine       2.9         12           1
 G glycine             6.0         25           2
 H histidine           3.6         15           1
 I isoleucine          5.1         21           2
 K lysine              7.0         29           2
 L leucine             9.2         38           2
 M methionine          1.0          4           1
 N asparagine          3.1         13           1
 P proline             6.3         26           3
 Q glutamine           5.8         24           1
 R arginine            6.8         28           3
 S serine              7.7         32           3
 T threonine           5.1         21           2
 V valine              8.0         33           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.7         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346880 
CENPJ                 0.219   centromere protein J 
ARID2                 0.007   AT rich interactive domain 2 (ARID, RFX-like) 
FOXP4                 0.007   forkhead box P4 isoform 3 
FOXP4                 0.007   forkhead box P4 isoform 1 
ENG                   0.006   endoglin isoform 1 precursor 
ENG                   0.006   endoglin isoform 2 precursor 
RAPGEF6               0.006   PDZ domain-containing guanine nucleotide exchange fa...
FOXP4                 0.006   forkhead box P4 isoform 2 
ATM                   0.005   ataxia telangiectasia mutated isoform 1 
LOC651610             0.005   PREDICTED: similar to Serine-protein kinase ATM, pa...
LOC100133567          0.005   PREDICTED: similar to Rap guanine nucleotide exchan...
RAPGEF2               0.005   Rap guanine nucleotide exchange factor 2 
SVIL                  0.005   supervillin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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