Guide to the Human Genome
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Name: TCP10L Sequence: fasta or formatted (215aa) NCBI GI: 21389535
Description:

T-complex 10A-2

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         22           2
 C cysteine            1.4          3           1
 D aspartate           3.7          8           1
 E glutamate           8.4         18           2
 F phenylalanine       0.5          1           1
 G glycine             6.5         14           2
 H histidine           3.3          7           1
 I isoleucine          3.3          7           2
 K lysine              7.0         15           2
 L leucine             9.3         20           2
 M methionine          2.3          5           1
 N asparagine          3.3          7           2
 P proline             8.4         18           2
 Q glutamine           6.5         14           3
 R arginine            9.3         20           3
 S serine              7.4         16           3
 T threonine           5.1         11           1
 V valine              2.3          5           1
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-complex 10A-2 
TCP10L2               0.748   t-complex 10-like 2 
TCP10                 0.614   t-complex 10 
CENPJ                 0.078   centromere protein J 
NUMA1                 0.039   nuclear mitotic apparatus protein 1 
SUPT6H                0.029   suppressor of Ty 6 homolog 
C10orf141             0.029   hypothetical protein LOC642938 
EFCAB4B               0.024   EF-hand calcium binding domain 4B isoform a 
AP1GBP1               0.022   AP1 gamma subunit binding protein 1 isoform 2 
AP1GBP1               0.022   AP1 gamma subunit binding protein 1 isoform 1 
ANGPTL6               0.019   angiopoietin-like 6 
EFCAB4B               0.019   EF-hand calcium binding domain 4B isoform b 
CEP250                0.019   centrosomal protein 2 
RALBP1                0.019   ralA binding protein 1 
PRPF4B                0.017   serine/threonine-protein kinase PRP4K 
MYH14                 0.017   myosin, heavy chain 14 isoform 1 
MYH14                 0.017   myosin, heavy chain 14 isoform 2 
MYH14                 0.017   myosin, heavy chain 14 isoform 3 
CROCC                 0.017   ciliary rootlet coiled-coil 
CCDC61                0.017   coiled-coil domain containing 61 
LOC100271715          0.017   DH and coiled-coil domain-containing protein 
KLRAQ1                0.017   KLRAQ motif containing 1 isoform 3 
KLRAQ1                0.017   KLRAQ motif containing 1 isoform 2 
KLRAQ1                0.017   KLRAQ motif containing 1 isoform 1 
HMGXB3                0.015   HMG box domain containing 3 
PCLO                  0.015   piccolo isoform 2 
PCLO                  0.015   piccolo isoform 1 
KIAA1549              0.015   hypothetical protein LOC57670 
CARD9                 0.015   caspase recruitment domain protein 9 isoform 2 [Homo...
CARD9                 0.015   caspase recruitment domain protein 9 isoform 1 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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