Guide to the Human Genome
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Name: TCTN1 Sequence: fasta or formatted (592aa) NCBI GI: 130978359
Description:

tectonic family member 1 isoform 1

Referenced in:

Hedgehog and Related Pathways

Other entries for this name:
alt prot [587aa] tectonic family member 1 isoform 2
alt prot [573aa] tectonic family member 1 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         43           2
 C cysteine            3.2         19           3
 D aspartate           4.4         26           1
 E glutamate           3.9         23           2
 F phenylalanine       5.9         35           3
 G glycine             5.2         31           1
 H histidine           1.2          7           1
 I isoleucine          4.4         26           2
 K lysine              3.5         21           2
 L leucine             9.6         57           2
 M methionine          0.8          5           1
 N asparagine          4.9         29           2
 P proline             8.3         49           2
 Q glutamine           5.1         30           2
 R arginine            3.2         19           2
 S serine              8.8         52           3
 T threonine           8.1         48           2
 V valine              9.3         55           3
 W tryptophan          0.7          4           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tectonic family member 1 isoform 1 
TCTN1                 0.985   tectonic family member 1 isoform 2 
TCTN1                 0.915   tectonic family member 1 isoform 3 
TCTN3                 0.132   tectonic 3 isoform a precursor 
TCTN3                 0.054   tectonic 3 isoform b precursor 
TCTN2                 0.040   tectonic family member 2 isoform 2 
TCTN2                 0.040   tectonic family member 2 isoform 1 
TRIM33                0.008   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.008   tripartite motif-containing 33 protein isoform alpha...
KRTAP10-2             0.007   keratin associated protein 10-2 
KRTAP10-10            0.007   keratin associated protein 10-10 
LOC100130599          0.007   PREDICTED: hypothetical protein 
LOC100130599          0.007   PREDICTED: similar to Keratin-associated protein 10...
CCDC9                 0.007   coiled-coil domain containing 9 
LOC400558             0.006   PREDICTED: hypothetical protein LOC400558 
LOC400558             0.006   PREDICTED: hypothetical protein LOC400558 
LOC400558             0.006   PREDICTED: hypothetical protein LOC400558 
ZNF469                0.006   zinc finger protein 469 
TMEM119               0.006   transmembrane protein 119 
KRTAP10-4             0.006   keratin associated protein 10-4 
KRTAP10-7             0.006   keratin associated protein 10-7 
LOC100128074          0.006   PREDICTED: hypothetical protein 
EP300                 0.005   E1A binding protein p300 
KRTAP10-6             0.005   keratin associated protein 10-6 
SETD1B                0.005   SET domain containing 1B 
LAG3                  0.005   lymphocyte-activation protein 3 precursor 
FOXK1                 0.005   forkhead box K1 
NHSL1                 0.005   NHS-like 1 
KRTAP10-8             0.005   keratin associated protein 10-8 
MUC2                  0.005   mucin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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