Guide to the Human Genome
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Name: LOC400558 Sequence: fasta or formatted (241aa) NCBI GI: 169209574
Description:

PREDICTED: hypothetical protein LOC400558

Not currently referenced in the text

Other entries for this name:
alt prot {241aa} PREDICTED: hypothetical protein LOC400558
alt prot {241aa} PREDICTED: hypothetical protein LOC400558
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         18           2
 C cysteine            4.6         11           1
 D aspartate           2.1          5           1
 E glutamate           1.7          4           1
 F phenylalanine       1.7          4           1
 G glycine            12.0         29           2
 H histidine           2.9          7           1
 I isoleucine          1.2          3           1
 K lysine              0.8          2           1
 L leucine            10.0         24           2
 M methionine          1.2          3           1
 N asparagine          0.4          1           1
 P proline            18.7         45           2
 Q glutamine           4.6         11           1
 R arginine            5.4         13           1
 S serine              8.3         20           3
 T threonine           9.1         22           2
 V valine              3.7          9           1
 W tryptophan          3.7          9           2
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC400558 
LOC400558             0.996   PREDICTED: hypothetical protein LOC400558 
LOC400558             0.996   PREDICTED: hypothetical protein LOC400558 
LOC440829             0.049   PREDICTED: transmembrane protein 46-like 
DMRTC2                0.043   DMRT-like family C2 
CIC                   0.041   capicua homolog 
ZNF469                0.039   zinc finger protein 469 
LOC440829             0.039   PREDICTED: transmembrane protein 46-like 
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.037   SWI/SNF-related matrix-associated actin-dependent re...
FLJ22184              0.033   PREDICTED: hypothetical protein LOC80164 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
PCLO                  0.029   piccolo isoform 2 
PCLO                  0.029   piccolo isoform 1 
FLJ22184              0.027   PREDICTED: hypothetical protein FLJ22184 
LOC100294420          0.027   PREDICTED: similar to mucin 2 
RERE                  0.027   atrophin-1 like protein isoform b 
RERE                  0.027   atrophin-1 like protein isoform a 
RERE                  0.027   atrophin-1 like protein isoform a 
TERT                  0.025   telomerase reverse transcriptase isoform 2 
TERT                  0.025   telomerase reverse transcriptase isoform 1 
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 
WBP11                 0.025   WW domain binding protein 11 
FAM71E2               0.023   hypothetical protein LOC284418 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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