Guide to the Human Genome
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Name: TCTN2 Sequence: fasta or formatted (697aa) NCBI GI: 31377681
Description:

tectonic family member 2 isoform 1

Referenced in:

Hedgehog and Related Pathways

Other entries for this name:
alt prot [696aa] tectonic family member 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         47           2
 C cysteine            3.7         26           3
 D aspartate           4.6         32           1
 E glutamate           5.2         36           3
 F phenylalanine       4.4         31           1
 G glycine             6.6         46           2
 H histidine           1.9         13           1
 I isoleucine          6.0         42           2
 K lysine              3.2         22           2
 L leucine            10.9         76           5
 M methionine          1.1          8           1
 N asparagine          6.3         44           3
 P proline             5.7         40           2
 Q glutamine           4.7         33           2
 R arginine            3.6         25           2
 S serine              7.0         49           2
 T threonine           6.3         44           3
 V valine              7.3         51           2
 W tryptophan          1.7         12           1
 Y tyrosine            2.9         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tectonic family member 2 isoform 1 
TCTN2                 0.996   tectonic family member 2 isoform 2 
TCTN3                 0.058   tectonic 3 isoform a precursor 
TCTN1                 0.033   tectonic family member 1 isoform 1 
TCTN1                 0.033   tectonic family member 1 isoform 2 
TCTN3                 0.031   tectonic 3 isoform b precursor 
TCTN1                 0.023   tectonic family member 1 isoform 3 
LAMB4                 0.005   laminin, beta 4 
LOC645177             0.004   PREDICTED: hypothetical protein 
LOC645177             0.004   PREDICTED: hypothetical protein 
LOC645177             0.004   PREDICTED: hypothetical protein 
LOC100134181          0.004   PREDICTED: hypothetical protein 
LOC100289464          0.004   PREDICTED: hypothetical protein 
LOC100289464          0.004   PREDICTED: hypothetical protein XP_002343093 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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