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Search of human proteins with 130484306
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|130484306 retinoic acid early transcript 1G [Homo sapiens]
(334 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|130484306 retinoic acid early transcript 1G [Homo sapiens] 699 0.0
gi|13376824 UL16 binding protein 2 [Homo sapiens] 438 e-123
gi|126723295 retinoic acid early transcript 1L [Homo sapiens] 433 e-122
gi|13376826 UL16 binding protein 1 [Homo sapiens] 299 2e-81
gi|13375656 UL16 binding protein 3 [Homo sapiens] 249 2e-66
gi|21040249 retinoic acid early transcript 1E [Homo sapiens] 130 1e-30
gi|21040347 hemochromatosis protein isoform 6 precursor [Homo sa... 65 8e-11
gi|4504377 hemochromatosis protein isoform 1 precursor [Homo sap... 65 8e-11
gi|4504417 major histocompatibility complex, class I-related [Ho... 61 1e-09
gi|21040353 hemochromatosis protein isoform 9 precursor [Homo sa... 59 6e-09
gi|17986001 major histocompatibility complex, class I, B precurs... 53 4e-07
gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens] 51 1e-06
gi|24797067 major histocompatibility complex, class I, A precurs... 51 2e-06
gi|62912479 major histocompatibility complex, class I, E precurs... 47 2e-05
gi|167857788 MHC class I polypeptide-related sequence B [Homo sa... 45 9e-05
gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [H... 44 3e-04
gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Hom... 44 3e-04
gi|21040351 hemochromatosis protein isoform 8 precursor [Homo sa... 43 5e-04
gi|21040349 hemochromatosis protein isoform 7 precursor [Homo sa... 43 5e-04
gi|4504415 major histocompatibility complex, class I, G precurso... 42 6e-04
gi|52630342 major histocompatibility complex, class I, C precurs... 40 0.004
gi|89063265 PREDICTED: similar to MHC class I antigen [Homo sapi... 40 0.004
gi|149158700 major histocompatibility complex, class I, F isofor... 37 0.019
gi|149158702 major histocompatibility complex, class I, F isofor... 35 0.072
gi|149158698 major histocompatibility complex, class I, F isofor... 35 0.072
gi|4557751 MHC class I polypeptide-related sequence A [Homo sapi... 34 0.16
gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precurso... 33 0.47
gi|21040341 hemochromatosis protein isoform 3 precursor [Homo sa... 32 0.79
gi|156151443 alpha-kinase 1 [Homo sapiens] 32 1.0
gi|156151441 alpha-kinase 1 [Homo sapiens] 32 1.0
>gi|130484306 retinoic acid early transcript 1G [Homo sapiens]
Length = 334
Score = 699 bits (1804), Expect = 0.0
Identities = 334/334 (100%), Positives = 334/334 (100%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
Sbjct: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT
Sbjct: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM
Sbjct: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
Query: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIMCLL 240
SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIMCLL
Sbjct: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIMCLL 240
Query: 241 ICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVTLP 300
ICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVTLP
Sbjct: 241 ICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSDSYQIAKRPLSGGHVTRVTLP 300
Query: 301 IIGDDSHSLPCPLALYTINNGAARYSEPLQVSIS 334
IIGDDSHSLPCPLALYTINNGAARYSEPLQVSIS
Sbjct: 301 IIGDDSHSLPCPLALYTINNGAARYSEPLQVSIS 334
>gi|13376824 UL16 binding protein 2 [Homo sapiens]
Length = 246
Score = 438 bits (1126), Expect = e-123
Identities = 212/237 (89%), Positives = 216/237 (91%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
MAAAA+ LL LPLLLLLS W R G ADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
Sbjct: 1 MAAAAATKILLCLPLLLLLSGWSRAGRADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
FLHYDCG+KTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQL DIQLENY PKEPLT
Sbjct: 61 FLHYDCGNKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLRDIQLENYTPKEPLT 120
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQARMSCEQKAEGH SGSWQ SFDGQIFLLFDSE RMWTTVHPGARKMKEKWENDK + M
Sbjct: 121 LQARMSCEQKAEGHSSGSWQFSFDGQIFLLFDSEKRMWTTVHPGARKMKEKWENDKVVAM 180
Query: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIM 237
SFHY SMGDC GWLEDFLMGMDSTLEPSAGAP MSSGT Q RATATTLILCCLLI+
Sbjct: 181 SFHYFSMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLII 237
>gi|126723295 retinoic acid early transcript 1L [Homo sapiens]
Length = 246
Score = 433 bits (1114), Expect = e-122
Identities = 210/237 (88%), Positives = 213/237 (89%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
MAAAA PA LL LPLL LL W R DPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT
Sbjct: 1 MAAAAIPALLLCLPLLFLLFGWSRARRDDPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
FLHYDCG+KTVTPVSPLGKKLNVT AWKAQNPVLREVVDILTEQLLDIQLENY PKEPLT
Sbjct: 61 FLHYDCGNKTVTPVSPLGKKLNVTMAWKAQNPVLREVVDILTEQLLDIQLENYTPKEPLT 120
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQARMSCEQKAEGH SGSWQ S DGQ FLLFDSE RMWTTVHPGARKMKEKWENDKD+ M
Sbjct: 121 LQARMSCEQKAEGHSSGSWQFSIDGQTFLLFDSEKRMWTTVHPGARKMKEKWENDKDVAM 180
Query: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIM 237
SFHYISMGDC GWLEDFLMGMDSTLEPSAGAP MSSGT Q RATATTLILCCLLI+
Sbjct: 181 SFHYISMGDCIGWLEDFLMGMDSTLEPSAGAPLAMSSGTTQLRATATTLILCCLLII 237
>gi|13376826 UL16 binding protein 1 [Homo sapiens]
Length = 244
Score = 299 bits (766), Expect = 2e-81
Identities = 147/246 (59%), Positives = 175/246 (71%), Gaps = 4/246 (1%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
MAAAASPAFLL LPLL LLS W R G D H LCYD + PK RP P+WC VQG VDE+
Sbjct: 1 MAAAASPAFLLCLPLLHLLSGWSRAGWVDTHCLCYDFIITPKSRPEPQWCEVQGLVDERP 60
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
FLHYDC + + LGKK+NVT W+ Q LR+VVD L QLLDIQ+EN IP EPLT
Sbjct: 61 FLHYDCVNHKAKAFASLGKKVNVTKTWEEQTETLRDVVDFLKGQLLDIQVENLIPIEPLT 120
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQARMSCE +A GHG GSWQ F+GQ FLLFDS NR WT +HPGA+KM EKWE ++D+TM
Sbjct: 121 LQARMSCEHEAHGHGRGSWQFLFNGQKFLLFDSNNRKWTALHPGAKKMTEKWEKNRDVTM 180
Query: 181 SFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLI--MC 238
F IS+GDC WLE+FLM + L+P+ PP+++ GT QP+A ATTL LLI +C
Sbjct: 181 FFQKISLGDCKMWLEEFLMYWEQMLDPT--KPPSLAPGTTQPKAMATTLSPWSLLIIFLC 238
Query: 239 LLICSR 244
++ R
Sbjct: 239 FILAGR 244
>gi|13375656 UL16 binding protein 3 [Homo sapiens]
Length = 244
Score = 249 bits (636), Expect = 2e-66
Identities = 133/243 (54%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 1 MAAAASPAFLLRLPLL-LLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEK 59
MAAAASPA L RL +L LL W TG AD HSL Y+ T+I R G +WC VQ QVD+K
Sbjct: 1 MAAAASPAILPRLAILPYLLFDWSGTGRADAHSLWYNFTIIHLPRHGQQWCEVQSQVDQK 60
Query: 60 TFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPL 119
FL YDCGS V + L ++L T AW Q +LREV L +L D +LE++ P PL
Sbjct: 61 NFLSYDCGSDKVLSMGHLEEQLYATDAWGKQLEMLREVGQRLRLELADTELEDFTPSGPL 120
Query: 120 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT 179
TLQ RMSCE +A+G+ GSWQ SFDG+ FLLFDS NR WT VH GAR+MKEKWE D +T
Sbjct: 121 TLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKDSGLT 180
Query: 180 MSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLI-LCCLLIMC 238
F +SM DC WL DFLM LEP+ APPTM+ G AQP+A ATTL L+I+C
Sbjct: 181 TFFKMVSMRDCKSWLRDFLMHRKKRLEPT--APPTMAPGLAQPKAIATTLSPWSFLIILC 238
Query: 239 LLI 241
++
Sbjct: 239 FIL 241
>gi|21040249 retinoic acid early transcript 1E [Homo sapiens]
Length = 263
Score = 130 bits (328), Expect = 1e-30
Identities = 81/246 (32%), Positives = 124/246 (50%), Gaps = 8/246 (3%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
++ +SP LL LLLL++ G HSLC++ T+ RPG WC Q +++
Sbjct: 4 ISLTSSPVRLLLFLLLLLIALEIMVG---GHSLCFNFTIKSLSRPGQPWCEAQVFLNKNL 60
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
FL Y+ + V P+ LGKK+ T+ W L EV L L DI+ + +P T
Sbjct: 61 FLQYNSDNNMVKPLGLLGKKVYATSTWGELTQTLGEVGRDLRMLLCDIKPQ-IKTSDPST 119
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQ M C+++AE SWQ + +G+ LLFD+ N WT ++ A K+KE W+ D+ +
Sbjct: 120 LQVEMFCQREAERCTGASWQFATNGEKSLLFDAMNMTWTVINHEASKIKETWKKDRGLEK 179
Query: 181 SFHYISMGDCTGWLEDFLMGMDS----TLEPSAGAPPTMSSGTAQPRATATTLILCCLLI 236
F +S GDC WL +FL ++ T+ P + SS + R + +L+
Sbjct: 180 YFRKLSKGDCDHWLREFLGHWEAMPEPTVSPVNASDIHWSSSSLPDRWIILGAFILLVLM 239
Query: 237 MCLLIC 242
+LIC
Sbjct: 240 GIVLIC 245
>gi|21040347 hemochromatosis protein isoform 6 precursor [Homo
sapiens]
Length = 334
Score = 65.1 bits (157), Expect = 8e-11
Identities = 54/198 (27%), Positives = 77/198 (38%), Gaps = 3/198 (1%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
M A PA LL L+LL ++ + L HSL Y + G G VD++
Sbjct: 1 MGPRARPALLL---LMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQL 57
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
F+ YD S+ V P +P + W + L+ + T I + KE T
Sbjct: 58 FVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHT 117
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQ + CE + + G W+ +DGQ L F + W P A K +WE K
Sbjct: 118 LQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRAR 177
Query: 181 SFHYISMGDCTGWLEDFL 198
DC L+ L
Sbjct: 178 QNRAYLERDCPAQLQQLL 195
>gi|4504377 hemochromatosis protein isoform 1 precursor [Homo
sapiens]
Length = 348
Score = 65.1 bits (157), Expect = 8e-11
Identities = 54/198 (27%), Positives = 77/198 (38%), Gaps = 3/198 (1%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
M A PA LL L+LL ++ + L HSL Y + G G VD++
Sbjct: 1 MGPRARPALLL---LMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQL 57
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
F+ YD S+ V P +P + W + L+ + T I + KE T
Sbjct: 58 FVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHNHSKESHT 117
Query: 121 LQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
LQ + CE + + G W+ +DGQ L F + W P A K +WE K
Sbjct: 118 LQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRAR 177
Query: 181 SFHYISMGDCTGWLEDFL 198
DC L+ L
Sbjct: 178 QNRAYLERDCPAQLQQLL 195
>gi|4504417 major histocompatibility complex, class I-related [Homo
sapiens]
Length = 341
Score = 61.2 bits (147), Expect = 1e-09
Identities = 66/268 (24%), Positives = 108/268 (40%), Gaps = 39/268 (14%)
Query: 8 AFLLRLPLLLLLS-SWCRTGLADPHSLCY-DITVIPKFRPGPRWCAVQGQVDEKTFLHYD 65
AFLL L ++L++ S RT HSL Y + V P + +V G VD YD
Sbjct: 6 AFLLPLIIVLMVKHSDSRT-----HSLRYFRLGVSDPIHGVPEFISV-GYVDSHPITTYD 59
Query: 66 CGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLTLQARM 125
++ P +P + W+ +LR + +L +Q +Y T Q +
Sbjct: 60 SVTRQKEPRAPWMAENLAPDHWERYTQLLRGWQQMFKVELKRLQ-RHYNHSGSHTYQRMI 118
Query: 126 SCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWE-NDKDMTMSFHY 184
CE +G +G Q ++DGQ FL+F+ + W V A +K+ WE N ++ ++
Sbjct: 119 GCELLEDGSTTGFLQYAYDGQDFLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNW 178
Query: 185 ISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCCLLIMCLLICSR 244
+ +C WL+ FL TL+ + ++ P TA L C
Sbjct: 179 LE-EECIAWLKRFLEYGKDTLQRTEPPLVRVNRKETFPGVTA-------------LFCKA 224
Query: 245 HSLTQSHGHHPQSLQPPPHPPLLHPTWL 272
H +PP ++ TW+
Sbjct: 225 HGF---------------YPPEIYMTWM 237
>gi|21040353 hemochromatosis protein isoform 9 precursor [Homo
sapiens]
Length = 325
Score = 58.9 bits (141), Expect = 6e-09
Identities = 39/145 (26%), Positives = 57/145 (39%)
Query: 54 GQVDEKTFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENY 113
G VD++ F+ YD S+ V P +P + W + L+ + T I +
Sbjct: 28 GYVDDQLFVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTIMENHN 87
Query: 114 IPKEPLTLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWE 173
KE TLQ + CE + + G W+ +DGQ L F + W P A K +WE
Sbjct: 88 HSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWE 147
Query: 174 NDKDMTMSFHYISMGDCTGWLEDFL 198
K DC L+ L
Sbjct: 148 RHKIRARQNRAYLERDCPAQLQQLL 172
>gi|17986001 major histocompatibility complex, class I, B precursor
[Homo sapiens]
Length = 362
Score = 52.8 bits (125), Expect = 4e-07
Identities = 59/242 (24%), Positives = 96/242 (39%), Gaps = 20/242 (8%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVD 57
+ A LL L L +W A HS+ Y T + RPG PR+ +V G VD
Sbjct: 2 LVMAPRTVLLLLSAALALTETW-----AGSHSMRYFYTSVS--RPGRGEPRFISV-GYVD 53
Query: 58 EKTFLHYD--CGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQ-LENYI 114
+ F+ +D S P +P ++ W + + E L +++ N
Sbjct: 54 DTQFVRFDSDAASPREEPRAPWIEQEG-PEYWDRNTQIYKAQAQTDRESLRNLRGYYNQS 112
Query: 115 PKEPLTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWE 173
TLQ+ C+ +G G Q ++DG+ ++ + + R WT A+ + KWE
Sbjct: 113 EAGSHTLQSMYGCDVGPDGRLLRGHDQYAYDGKDYIALNEDLRSWTAADTAAQITQRKWE 172
Query: 174 NDKDMTMSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATTLILCC 233
++ Y+ G+C WL +L LE A P + T P + + C
Sbjct: 173 AAREAEQRRAYLE-GECVEWLRRYLENGKDKLE---RADPPKTHVTHHPISDHEATLRCW 228
Query: 234 LL 235
L
Sbjct: 229 AL 230
>gi|4502337 alpha-2-glycoprotein 1, zinc [Homo sapiens]
Length = 298
Score = 51.2 bits (121), Expect = 1e-06
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 2/162 (1%)
Query: 13 LPLLLLLSSWCRTGLADP-HSLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKTV 71
L LLLLL D +SL Y T + K G +++ F Y+ +
Sbjct: 9 LSLLLLLGPAVPQENQDGRYSLTYIYTGLSKHVEDVPAFQALGSLNDLQFFRYNSKDRKS 68
Query: 72 TPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKA 131
P+ L +++ WK + + + DI E L DI LQ R CE +
Sbjct: 69 QPMG-LWRQVEGMEDWKQDSQLQKAREDIFMETLKDIVEYYNDSNGSHVLQGRFGCEIEN 127
Query: 132 EGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWE 173
W+ +DG+ ++ F+ E W P A+ K+KWE
Sbjct: 128 NRSSGAFWKYYYDGKDYIEFNKEIPAWVPFDPAAQITKQKWE 169
>gi|24797067 major histocompatibility complex, class I, A precursor
[Homo sapiens]
Length = 365
Score = 50.8 bits (120), Expect = 2e-06
Identities = 63/222 (28%), Positives = 94/222 (42%), Gaps = 34/222 (15%)
Query: 1 MAAAASPAFLLRLP-LLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQV 56
MA A LL L L L +W A HS+ Y T + RPG PR+ AV G V
Sbjct: 1 MAVMAPRTLLLLLSGALALTQTW-----AGSHSMRYFFTSVS--RPGRGEPRFIAV-GYV 52
Query: 57 DEKTFLHYD--CGSKTVTPVSPLGKKLNV------TTAWKAQNPVLREVVDILTEQLLDI 108
D+ F+ +D S+ + P +P ++ T KAQ+ R VD+ T
Sbjct: 53 DDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDQETRNVKAQSQTDR--VDLGT------ 104
Query: 109 QLENYIPKEPL---TLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPG 164
L Y + T+Q C+ ++G G Q ++DG+ ++ + + R WT
Sbjct: 105 -LRGYYNQSEAGSHTIQIMYGCDVGSDGRFLRGYRQDAYDGKDYIALNEDLRSWTAADMA 163
Query: 165 ARKMKEKWENDKDMTMSFHYISMGDCTGWLEDFLMGMDSTLE 206
A+ K KWE + Y+ G C WL +L TL+
Sbjct: 164 AQITKRKWEAAHEAEQLRAYLD-GTCVEWLRRYLENGKETLQ 204
>gi|62912479 major histocompatibility complex, class I, E precursor
[Homo sapiens]
Length = 358
Score = 47.4 bits (111), Expect = 2e-05
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 17/203 (8%)
Query: 10 LLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYD- 65
LL L L +W A HSL Y T + RPG PR+ +V G VD+ F+ +D
Sbjct: 8 LLLSEALALTQTW-----AGSHSLKYFHTSVS--RPGRGEPRFISV-GYVDDTQFVRFDN 59
Query: 66 -CGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQ-LENYIPKEPLTLQA 123
S + P +P ++ + W + R+ I L ++ N TLQ
Sbjct: 60 DAASPRMVPRAPWMEQEG-SEYWDRETRSARDTAQIFRVNLRTLRGYYNQSEAGSHTLQW 118
Query: 124 RMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTMSF 182
CE +G G Q ++DG+ +L + + R WT V A+ ++K + +
Sbjct: 119 MHGCELGPDGRFLRGYEQFAYDGKDYLTLNEDLRSWTAVDTAAQISEQKSNDASEAEHQR 178
Query: 183 HYISMGDCTGWLEDFLMGMDSTL 205
Y+ C WL +L TL
Sbjct: 179 AYLE-DTCVEWLHKYLEKGKETL 200
>gi|167857788 MHC class I polypeptide-related sequence B [Homo
sapiens]
Length = 383
Score = 45.1 bits (105), Expect = 9e-05
Identities = 42/177 (23%), Positives = 69/177 (38%), Gaps = 10/177 (5%)
Query: 28 ADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKTVTPVSPLGKKLNVTTAW 87
A+PHSL Y++ V+ + +G +D + FL YD + P + + W
Sbjct: 23 AEPHSLRYNLMVLSQDGSVQSGFLAEGHLDGQPFLRYDRQKRRAKPQGQWAENVLGAKTW 82
Query: 88 KAQNPVLREVVDILTEQLLDIQLENYIPKEPL-TLQARMSCEQKAEGHGSGSWQLSFDGQ 146
+ L E L L I+ + K L +LQ CE + GS +DG+
Sbjct: 83 DTETEDLTENGQDLRRTLTHIKDQ----KGGLHSLQEIRVCEIHEDSSTRGSRHFYYDGE 138
Query: 147 IFLLFDSENRMWTTVHPG-----ARKMKEKWENDKDMTMSFHYISMGDCTGWLEDFL 198
+FL + E + T A + W+ D T + + DC L+ +L
Sbjct: 139 LFLSQNLETQESTVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQRYL 195
>gi|209862839 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 11/207 (5%)
Query: 28 ADPH-SLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKTVTPVSPLGKKLNVTTA 86
A+ H SL Y +T + PG V G + + +L Y+ P + V+
Sbjct: 24 AESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLRGEAEPCGAWVWENQVSWY 83
Query: 87 WKAQNPVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKAEGHGSGSWQLSFDGQ 146
W+ + LR + E+L + K P TLQ + CE + + + + +G+
Sbjct: 84 WEKETTDLR-----IKEKLFLEAFKALGGKGPYTLQGLLGCELGPDNTSVPTAKFALNGE 138
Query: 147 IFLLFDSENRMWTTVHPGARKMKEKW-ENDKDMTMSFHYISMGDCTGWLEDFLMGMDSTL 205
F+ FD + W P A + ++W + DK ++ + C L + L L
Sbjct: 139 EFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFL-LFSCPHRLREHLERGRGNL 197
Query: 206 EPSAGAPPTMSSGTAQPRATATTLILC 232
E PP+M A+P + +++ C
Sbjct: 198 EWK--EPPSMRL-KARPSSPGFSVLTC 221
>gi|4758346 Fc fragment of IgG, receptor, transporter, alpha [Homo
sapiens]
Length = 365
Score = 43.5 bits (101), Expect = 3e-04
Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 11/207 (5%)
Query: 28 ADPH-SLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKTVTPVSPLGKKLNVTTA 86
A+ H SL Y +T + PG V G + + +L Y+ P + V+
Sbjct: 24 AESHLSLLYHLTAVSSPAPGTPAFWVSGWLGPQQYLSYNSLRGEAEPCGAWVWENQVSWY 83
Query: 87 WKAQNPVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKAEGHGSGSWQLSFDGQ 146
W+ + LR + E+L + K P TLQ + CE + + + + +G+
Sbjct: 84 WEKETTDLR-----IKEKLFLEAFKALGGKGPYTLQGLLGCELGPDNTSVPTAKFALNGE 138
Query: 147 IFLLFDSENRMWTTVHPGARKMKEKW-ENDKDMTMSFHYISMGDCTGWLEDFLMGMDSTL 205
F+ FD + W P A + ++W + DK ++ + C L + L L
Sbjct: 139 EFMNFDLKQGTWGGDWPEALAISQRWQQQDKAANKELTFL-LFSCPHRLREHLERGRGNL 197
Query: 206 EPSAGAPPTMSSGTAQPRATATTLILC 232
E PP+M A+P + +++ C
Sbjct: 198 EWK--EPPSMRL-KARPSSPGFSVLTC 221
>gi|21040351 hemochromatosis protein isoform 8 precursor [Homo
sapiens]
Length = 246
Score = 42.7 bits (99), Expect = 5e-04
Identities = 23/79 (29%), Positives = 31/79 (39%)
Query: 120 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT 179
TLQ + CE + + G W+ +DGQ L F + W P A K +WE K
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 180 MSFHYISMGDCTGWLEDFL 198
DC L+ L
Sbjct: 89 RQNRAYLERDCPAQLQQLL 107
>gi|21040349 hemochromatosis protein isoform 7 precursor [Homo
sapiens]
Length = 260
Score = 42.7 bits (99), Expect = 5e-04
Identities = 23/79 (29%), Positives = 31/79 (39%)
Query: 120 TLQARMSCEQKAEGHGSGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMT 179
TLQ + CE + + G W+ +DGQ L F + W P A K +WE K
Sbjct: 29 TLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWERHKIRA 88
Query: 180 MSFHYISMGDCTGWLEDFL 198
DC L+ L
Sbjct: 89 RQNRAYLERDCPAQLQQLL 107
>gi|4504415 major histocompatibility complex, class I, G precursor
[Homo sapiens]
Length = 338
Score = 42.4 bits (98), Expect = 6e-04
Identities = 53/198 (26%), Positives = 81/198 (40%), Gaps = 19/198 (9%)
Query: 9 FLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYD 65
FLL L L +W A HS+ Y + RPG PR+ A+ G VD+ F+ +D
Sbjct: 10 FLLLSGALTLTETW-----AGSHSMRYFSAAVS--RPGRGEPRFIAM-GYVDDTQFVRFD 61
Query: 66 CGSKT--VTPVSPLGKKLNVTTAWKAQ--NPVLREVVDILTEQLLDIQLENYIPKEPLTL 121
S + P +P ++ W+ + N D + Q L N TL
Sbjct: 62 SDSACPRMEPRAPWVEQEG-PEYWEEETRNTKAHAQTDRMNLQTLR-GYYNQSEASSHTL 119
Query: 122 QARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTM 180
Q + C+ ++G G Q ++DG+ +L + + R WT A+ K K E
Sbjct: 120 QWMIGCDLGSDGRLLRGYEQYAYDGKDYLALNEDLRSWTAADTAAQISKRKCEAANVAEQ 179
Query: 181 SFHYISMGDCTGWLEDFL 198
Y+ G C WL +L
Sbjct: 180 RRAYLE-GTCVEWLHRYL 196
>gi|52630342 major histocompatibility complex, class I, C precursor
[Homo sapiens]
Length = 366
Score = 39.7 bits (91), Expect = 0.004
Identities = 64/247 (25%), Positives = 95/247 (38%), Gaps = 29/247 (11%)
Query: 1 MAAAASPAFLLRLPL-LLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQV 56
M A A LL L L L +W A HS+ Y T + RPG PR+ +V G V
Sbjct: 1 MRVMAPRALLLLLSGGLALTETW-----ACSHSMRYFDTAVS--RPGRGEPRFISV-GYV 52
Query: 57 DEKTFLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLD-IQLEN--- 112
D+ F+ +D + SP G+ + RE + D + L N
Sbjct: 53 DDTQFVRFDSDA-----ASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQADRVSLRNLRG 107
Query: 113 -YIPKEP--LTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKM 168
Y E TLQ C+ +G G Q ++DG+ ++ + + R WT A+
Sbjct: 108 YYNQSEDGSHTLQRMSGCDLGPDGRLLRGYDQSAYDGKDYIALNEDLRSWTAADTAAQIT 167
Query: 169 KEKWENDKDMTMSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAPPTMSSGTAQPRATATT 228
+ K E + Y+ G C WL +L TL+ A P + T P +
Sbjct: 168 QRKLEAARAAEQLRAYLE-GTCVEWLRRYLENGKETLQ---RAEPPKTHVTHHPLSDHEA 223
Query: 229 LILCCLL 235
+ C L
Sbjct: 224 TLRCWAL 230
>gi|89063265 PREDICTED: similar to MHC class I antigen [Homo
sapiens]
Length = 366
Score = 39.7 bits (91), Expect = 0.004
Identities = 53/213 (24%), Positives = 85/213 (39%), Gaps = 17/213 (7%)
Query: 31 HSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYDCGSKTVT--PVSPLGKKLNVTT 85
HSL Y T + RPG PR+ +V G VD+ F+ +D S P +P ++
Sbjct: 40 HSLRYFYTAVS--RPGLGEPRFISV-GYVDDTQFVRFDSDSANPREEPRAPWMEQEG-PE 95
Query: 86 AWKAQNPVLREVVDILTEQLLDIQ-LENYIPKEPLTLQARMSCEQKAEGHG-SGSWQLSF 143
W Q ++++ L ++ N TLQ C+ +G G Q ++
Sbjct: 96 YWDEQTRIVKDTAQSFRVGLNTLRGYYNQSEAGSHTLQLMYGCDVGPDGRFLRGFMQDAY 155
Query: 144 DGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTMSFHYISMGDCTGWLEDFL-MGMD 202
DG+ ++ + + R WT A+ K K E +Y+ G C L +L G D
Sbjct: 156 DGRDYIALNEDLRSWTAADTAAQITKRKREAAGAAERQRNYLE-GRCVEGLRRYLETGKD 214
Query: 203 STLEPSAGAPPTMSSGTAQPRATATTLILCCLL 235
+ L A P + T P + + C L
Sbjct: 215 ALLR----ADPPKAHVTHHPISEREVTLRCWAL 243
>gi|149158700 major histocompatibility complex, class I, F isoform 3
precursor [Homo sapiens]
Length = 254
Score = 37.4 bits (85), Expect = 0.019
Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 30/220 (13%)
Query: 10 LLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYDC 66
LL L L +W A HSL Y T + RPG PR+ AV+ VD+ FL +D
Sbjct: 8 LLLSGALALTDTW-----AGSHSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRFDS 59
Query: 67 GSKT--VTPVSPLGKKLNV-----TTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEP- 118
+ + P P ++ TT + N V L L Y E
Sbjct: 60 DAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVA-------LRNLLRRYNQSEAG 112
Query: 119 -LTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDK 176
TLQ C+ +G G Q ++DG+ ++ + + R WT A ++ +++ +
Sbjct: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVA-QITQRFYEAE 171
Query: 177 DMTMSFHYISMGDCTGWLEDFLMGMDSTLEPSAGAP-PTM 215
+ F G+C L +L TL+ + +P PT+
Sbjct: 172 EYAEEFRTYLEGECLELLRRYLENGKETLQRAEQSPQPTI 211
>gi|149158702 major histocompatibility complex, class I, F isoform 1
precursor [Homo sapiens]
Length = 442
Score = 35.4 bits (80), Expect = 0.072
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 10 LLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYDC 66
LL L L +W A HSL Y T + RPG PR+ AV+ VD+ FL +D
Sbjct: 8 LLLSGALALTDTW-----AGSHSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRFDS 59
Query: 67 GSKT--VTPVSPLGKKLNV-----TTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEP- 118
+ + P P ++ TT + N V L L Y E
Sbjct: 60 DAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVA-------LRNLLRRYNQSEAG 112
Query: 119 -LTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDK 176
TLQ C+ +G G Q ++DG+ ++ + + R WT A ++ +++ +
Sbjct: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVA-QITQRFYEAE 171
Query: 177 DMTMSFHYISMGDCTGWLEDFLMGMDSTLE 206
+ F G+C L +L TL+
Sbjct: 172 EYAEEFRTYLEGECLELLRRYLENGKETLQ 201
>gi|149158698 major histocompatibility complex, class I, F isoform 2
precursor [Homo sapiens]
Length = 346
Score = 35.4 bits (80), Expect = 0.072
Identities = 53/210 (25%), Positives = 83/210 (39%), Gaps = 29/210 (13%)
Query: 10 LLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPG---PRWCAVQGQVDEKTFLHYDC 66
LL L L +W A HSL Y T + RPG PR+ AV+ VD+ FL +D
Sbjct: 8 LLLSGALALTDTW-----AGSHSLRYFSTAVS--RPGRGEPRYIAVE-YVDDTQFLRFDS 59
Query: 67 GSKT--VTPVSPLGKKLNV-----TTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEP- 118
+ + P P ++ TT + N V L L Y E
Sbjct: 60 DAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVA-------LRNLLRRYNQSEAG 112
Query: 119 -LTLQARMSCEQKAEGHG-SGSWQLSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDK 176
TLQ C+ +G G Q ++DG+ ++ + + R WT A ++ +++ +
Sbjct: 113 SHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVA-QITQRFYEAE 171
Query: 177 DMTMSFHYISMGDCTGWLEDFLMGMDSTLE 206
+ F G+C L +L TL+
Sbjct: 172 EYAEEFRTYLEGECLELLRRYLENGKETLQ 201
>gi|4557751 MHC class I polypeptide-related sequence A [Homo
sapiens]
Length = 383
Score = 34.3 bits (77), Expect = 0.16
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 10/177 (5%)
Query: 28 ADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKTVTPVSPLGKKLNVTTAW 87
A+PHSL Y++TV+ + +D + FL D P + + W
Sbjct: 23 AEPHSLRYNLTVLSWDGSVQSGFLTEVHLDGQPFLRCDRQKCRAKPQGQWAEDVLGNKTW 82
Query: 88 KAQNPVLREVVDILTEQLLDIQLENYIPKEPL-TLQARMSCEQKAEGHGSGSWQLSFDGQ 146
+ L L L I+ + KE L +LQ CE + S +DG+
Sbjct: 83 DRETRDLTGNGKDLRMTLAHIKDQ----KEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGE 138
Query: 147 IFLLFDSENRMWTTVHPG-----ARKMKEKWENDKDMTMSFHYISMGDCTGWLEDFL 198
+FL + E + WT A ++ + D T + ++ DC L +L
Sbjct: 139 LFLSQNLETKEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYL 195
>gi|31742490 gamma-aminobutyric acid A receptor, gamma 1 precursor
[Homo sapiens]
Length = 465
Score = 32.7 bits (73), Expect = 0.47
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 160 TVHPGARKMKEKWENDKDMTMSFHY-----ISMGDCTGWLEDFLMGMDSTLEPSAGAPPT 214
T+H G K E+D+D+T++ + I GD T L L G D+ L P G PT
Sbjct: 29 TLHLGNCVDKADDEDDEDLTVNKTWVLAPKIHEGDITQILNSLLQGYDNKLRPDIGVRPT 88
Query: 215 M 215
+
Sbjct: 89 V 89
>gi|21040341 hemochromatosis protein isoform 3 precursor [Homo
sapiens]
Length = 242
Score = 32.0 bits (71), Expect = 0.79
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 4/124 (3%)
Query: 1 MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKT 60
M A PA LL L+LL ++ + L HSL Y + G G VD++
Sbjct: 1 MGPRARPALLL---LMLLQTAVLQGRLLRSHSLHYLFMGASEQDLGLSLFEALGYVDDQL 57
Query: 61 FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLT 120
F+ YD S+ V P +P + W + L+ + T I +EN+ + T
Sbjct: 58 FVFYDHESRRVEPRTPWVSSRISSQMWLQLSQSLKGWDHMFTVDFWTI-MENHNHSKVTT 116
Query: 121 LQAR 124
L+ R
Sbjct: 117 LRCR 120
>gi|156151443 alpha-kinase 1 [Homo sapiens]
Length = 1244
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 41 PKFRPGPRWCAVQGQVDEKT---------FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQN 91
P F+ P W +G+ E T LH G+ ++ P S + T W QN
Sbjct: 776 PTFKASPSWVDPEGETAESTEDAPLDFHRVLHNSLGNISMLPCS------SFTPNWPVQN 829
Query: 92 PVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKAEGHGS 136
P R+ + EQ +D + L + C GHGS
Sbjct: 830 PDSRKSGGPVAEQGIDPDASTVDEEGQLLDSMDVPC---TNGHGS 871
>gi|156151441 alpha-kinase 1 [Homo sapiens]
Length = 1244
Score = 31.6 bits (70), Expect = 1.0
Identities = 27/105 (25%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 41 PKFRPGPRWCAVQGQVDEKT---------FLHYDCGSKTVTPVSPLGKKLNVTTAWKAQN 91
P F+ P W +G+ E T LH G+ ++ P S + T W QN
Sbjct: 776 PTFKASPSWVDPEGETAESTEDAPLDFHRVLHNSLGNISMLPCS------SFTPNWPVQN 829
Query: 92 PVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKAEGHGS 136
P R+ + EQ +D + L + C GHGS
Sbjct: 830 PDSRKSGGPVAEQGIDPDASTVDEEGQLLDSMDVPC---TNGHGS 871
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,521,463
Number of Sequences: 37866
Number of extensions: 758450
Number of successful extensions: 2918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 2874
Number of HSP's gapped (non-prelim): 55
length of query: 334
length of database: 18,247,518
effective HSP length: 103
effective length of query: 231
effective length of database: 14,347,320
effective search space: 3314230920
effective search space used: 3314230920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.