Guide to the Human Genome
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Name: GABRG1 Sequence: fasta or formatted (465aa) NCBI GI: 31742490
Description:

gamma-aminobutyric acid A receptor, gamma 1 precursor

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         20           2
 C cysteine            2.2         10           2
 D aspartate           6.0         28           2
 E glutamate           3.7         17           1
 F phenylalanine       6.2         29           2
 G glycine             4.9         23           1
 H histidine           1.9          9           1
 I isoleucine          7.3         34           2
 K lysine              5.4         25           2
 L leucine            10.1         47           3
 M methionine          2.8         13           1
 N asparagine          4.7         22           2
 P proline             4.7         22           1
 Q glutamine           2.2         10           1
 R arginine            5.2         24           2
 S serine              6.9         32           2
 T threonine           8.0         37           2
 V valine              6.5         30           2
 W tryptophan          2.4         11           1
 Y tyrosine            4.7         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid A receptor, gamma 1 precurso... 
GABRG2                0.739   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.734   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.712   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRG3                0.654   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRE                 0.403   gamma-aminobutyric acid (GABA) A receptor, epsilon p...
GABRA6                0.384   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA3                0.378   gamma-aminobutyric acid A receptor, alpha 3 precursor...
GABRA5                0.374   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRA4                0.365   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.365   gamma-aminobutyric acid (GABA) A receptor, alpha 1 p...
GABRA2                0.358   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.358   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRB1                0.276   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRB2                0.274   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB3                0.271   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.271   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB2                0.262   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRD                 0.257   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GLRA1                 0.256   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA2                 0.254   glycine receptor, alpha 2 isoform A 
GLRA2                 0.254   glycine receptor, alpha 2 isoform A 
GLRA3                 0.254   glycine receptor, alpha 3 isoform b 
GLRA2                 0.254   glycine receptor, alpha 2 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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