Guide to the Human Genome
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Name: AAAS Sequence: fasta or formatted (546aa) NCBI GI: 12962937
Description:

achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A)

Referenced in:

WD Repeat Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         38           2
 C cysteine            2.7         15           2
 D aspartate           3.3         18           2
 E glutamate           4.8         26           3
 F phenylalanine       3.8         21           1
 G glycine             8.2         45           4
 H histidine           3.3         18           2
 I isoleucine          3.8         21           2
 K lysine              2.6         14           1
 L leucine            11.2         61           2
 M methionine          0.7          4           1
 N asparagine          2.6         14           2
 P proline             9.7         53           5
 Q glutamine           3.1         17           1
 R arginine            5.5         30           1
 S serine              9.7         53           2
 T threonine           6.2         34           2
 V valine              7.0         38           1
 W tryptophan          3.8         21           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   achalasia, adrenocortical insufficiency, alacrimia (... 
CIAO1                 0.023   WD repeat domain 39 
THOC3                 0.023   THO complex 3 
TBL3                  0.020   transducin beta-like 3 
NLE1                  0.020   Notchless gene homolog isoform a 
WDR31                 0.019   WD repeat domain 31 isoform 1 
WDR31                 0.019   WD repeat domain 31 isoform 3 
HIRA                  0.018   HIR histone cell cycle regulation defective homolog ...
WDR16                 0.018   WD40-repeat protein upregulated in HCC isoform b [H...
CORO1C                0.018   coronin, actin binding protein, 1C isoform 1 
WDR16                 0.017   WD40-repeat protein upregulated in HCC isoform c [H...
GRWD1                 0.017   glutamate-rich WD repeat containing 1 
SNRNP40               0.017   WD repeat domain 57 (U5 snRNP specific) 
TEP1                  0.016   telomerase-associated protein 1 
TAF5L                 0.016   PCAF associated factor 65 beta isoform a 
SPAG16                0.016   sperm associated antigen 16 isoform 1 
WDR17                 0.015   WD repeat domain 17 isoform 2 
WDR17                 0.015   WD repeat domain 17 isoform 1 
WDHD1                 0.015   WD repeat and HMG-box DNA binding protein 1 isoform ...
WDHD1                 0.015   WD repeat and HMG-box DNA binding protein 1 isoform 1...
IFT80                 0.015   WD repeat domain 56 
WDR5                  0.015   WD repeat domain 5 
WDR5                  0.015   WD repeat domain 5 
TBL1X                 0.015   transducin beta-like 1X isoform b 
TBL1X                 0.015   transducin beta-like 1X isoform b 
TBL1X                 0.015   transducin beta-like 1X isoform a 
TBL1X                 0.015   transducin beta-like 1X isoform a 
CORO1A                0.015   coronin, actin binding protein, 1A 
TBL1XR1               0.014   transducin (beta)-like 1 X-linked receptor 1 
CORO1B                0.014   coronin, actin binding protein, 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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