IFT80 30303

Name: IFT80	Sequence: fasta or formatted (777aa)		NCBI GI: 46409657
Description: WD repeat domain 56		Referenced in: Additional Structural Proteins WD Repeat Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.9 54 2 C cysteine 1.5 12 1 D aspartate 5.3 41 2 E glutamate 6.0 47 2 F phenylalanine 3.5 27 1 G glycine 5.5 43 1 H histidine 2.8 22 1 I isoleucine 7.7 60 2 K lysine 7.6 59 2 L leucine 9.5 74 2 M methionine 1.3 10 1 N asparagine 4.2 33 1 P proline 3.1 24 1 Q glutamine 4.4 34 2 R arginine 3.9 30 2 S serine 7.5 58 4 T threonine 5.9 46 2 V valine 6.9 54 2 W tryptophan 2.7 21 1 Y tyrosine 3.6 28 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 WD repeat domain 56 TBL1XR1 0.032 transducin (beta)-like 1 X-linked receptor 1 TBL1X 0.028 transducin beta-like 1X isoform b TBL1X 0.028 transducin beta-like 1X isoform b TBL1X 0.028 transducin beta-like 1X isoform a TBL1X 0.028 transducin beta-like 1X isoform a TBL1Y 0.025 transducin beta-like 1Y TBL1Y 0.025 transducin beta-like 1Y TBL1Y 0.025 transducin beta-like 1Y IFT172 0.024 selective LIM binding factor homolog STRAP 0.020 serine/threonine kinase receptor associated protein... TEP1 0.019 telomerase-associated protein 1 GRWD1 0.018 glutamate-rich WD repeat containing 1 NLE1 0.017 Notchless gene homolog isoform a WDR51B 0.017 WD repeat domain 51B MORG1 0.017 mitogen-activated protein kinase organizer 1 MORG1 0.017 mitogen-activated protein kinase organizer 1 WDR51A 0.016 WD repeat domain 51A isoform 2 WDR51A 0.016 WD repeat domain 51A isoform 1 CIAO1 0.016 WD repeat domain 39 WDR51A 0.016 WD repeat domain 51A isoform 3 KATNB1 0.016 katanin p80 subunit B 1 TAF5L 0.016 PCAF associated factor 65 beta isoform a SNRNP40 0.016 WD repeat domain 57 (U5 snRNP specific) WDR5 0.015 WD repeat domain 5 WDR5 0.015 WD repeat domain 5 WDR12 0.014 WD repeat domain 12 protein WDR5B 0.014 WD repeat domain 5B WDR26 0.014 WD repeat domain 26 isoform b WDR26 0.014 WD repeat domain 26 isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.