Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CORO1B Sequence: fasta or formatted (489aa) NCBI GI: 65787364
Description:

coronin, actin binding protein, 1B

Referenced in:

Cytoskeleton
WD Repeat Proteins

Other entries for this name:
alt mRNA [489aa] coronin, actin binding protein, 1B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         39           2
 C cysteine            2.5         12           1
 D aspartate           6.1         30           2
 E glutamate           7.8         38           2
 F phenylalanine       3.3         16           1
 G glycine             7.0         34           3
 H histidine           2.2         11           1
 I isoleucine          4.5         22           2
 K lysine              4.5         22           1
 L leucine             8.8         43           2
 M methionine          2.2         11           1
 N asparagine          3.1         15           1
 P proline             6.3         31           2
 Q glutamine           2.5         12           1
 R arginine            7.2         35           2
 S serine              7.6         37           2
 T threonine           4.9         24           3
 V valine              7.8         38           3
 W tryptophan          1.6          8           1
 Y tyrosine            2.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coronin, actin binding protein, 1B 
CORO1B                1.000   coronin, actin binding protein, 1B 
CORO1C                0.754   coronin, actin binding protein, 1C isoform 1 
CORO6                 0.685   coronin 6 
CORO1A                0.653   coronin, actin binding protein, 1A 
CORO2A                0.409   coronin, actin binding protein, 2A 
CORO2A                0.409   coronin, actin binding protein, 2A 
CORO2B                0.391   coronin, actin binding protein, 2B 
CORO7                 0.216   coronin 7 
RBBP4                 0.046   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.046   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.046   retinoblastoma binding protein 4 isoform a 
WSB1                  0.045   WD repeat and SOCS box-containing 1 isoform 2 
WSB1                  0.045   WD repeat and SOCS box-containing 1 isoform 1 
TBL1XR1               0.041   transducin (beta)-like 1 X-linked receptor 1 
RBBP7                 0.040   retinoblastoma binding protein 7 
WDR17                 0.039   WD repeat domain 17 isoform 2 
WDR17                 0.039   WD repeat domain 17 isoform 1 
PRPF19                0.038   PRP19/PSO4 pre-mRNA processing factor 19 homolog [Hom...
WDR33                 0.038   WD repeat domain 33 isoform 1 
TBL1X                 0.037   transducin beta-like 1X isoform b 
TBL1X                 0.037   transducin beta-like 1X isoform b 
TBL1X                 0.037   transducin beta-like 1X isoform a 
TBL1X                 0.037   transducin beta-like 1X isoform a 
WDR26                 0.037   WD repeat domain 26 isoform b 
WDR26                 0.037   WD repeat domain 26 isoform a 
PEX7                  0.036   peroxisomal biogenesis factor 7 
PWP1                  0.036   periodic tryptophan protein 1 
TBL1Y                 0.035   transducin beta-like 1Y 
TBL1Y                 0.035   transducin beta-like 1Y 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press