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Search of human proteins with 4504721
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504721 interferon regulatory factor 1 [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504721 interferon regulatory factor 1 [Homo sapiens] 676 0.0
gi|153082752 interferon regulatory factor 2 [Homo sapiens] 224 8e-59
gi|4504567 interferon regulatory factor 8 [Homo sapiens] 118 8e-27
gi|167555104 interferon regulatory factor 4 [Homo sapiens] 115 4e-26
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi... 109 4e-24
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 109 4e-24
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi... 109 4e-24
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi... 109 4e-24
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi... 109 4e-24
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 109 4e-24
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens] 109 4e-24
gi|5453700 interferon regulatory factor 6 [Homo sapiens] 106 3e-23
gi|25282407 interferon-stimulated transcription factor 3, gamma ... 100 1e-21
gi|4504725 interferon regulatory factor 3 [Homo sapiens] 81 1e-15
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens] 64 2e-10
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens] 64 2e-10
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens] 64 2e-10
gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens] 44 1e-04
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens] 44 1e-04
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ... 44 1e-04
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 41 0.002
gi|89941479 hypothetical protein LOC148137 [Homo sapiens] 37 0.024
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 36 0.053
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 35 0.070
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 35 0.070
gi|11225260 DNA topoisomerase I [Homo sapiens] 33 0.35
gi|221316618 dystonin isoform 2 [Homo sapiens] 33 0.35
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 33 0.35
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 33 0.35
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 0.45
>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
Length = 325
Score = 676 bits (1743), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT 180
KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
Sbjct: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT 180
Query: 181 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL 240
PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
Sbjct: 181 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL 240
Query: 241 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN 300
LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
Sbjct: 241 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN 300
Query: 301 MDATWLDSLLTPVRLPSIQAIPCAP 325
MDATWLDSLLTPVRLPSIQAIPCAP
Sbjct: 301 MDATWLDSLLTPVRLPSIQAIPCAP 325
>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
Length = 349
Score = 224 bits (571), Expect = 8e-59
Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 24/274 (8%)
Query: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP + +
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLS---------SSTLPDDHSS---YTVPG 168
K +K K+ ++ K K ++ +SS S+G+S +ST+ ++ S V G
Sbjct: 121 KGKKPKTEKEDKVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSTIKNEVDSTVNIIVVG 179
Query: 169 YM---QDLEVEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATT 225
++E ++ +T C V + + P S S+LY Q+SP+ S +E+ T
Sbjct: 180 QSHLDSNIENQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 235
Query: 226 DEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLN 259
+ +P D + W+ N++GK YL N
Sbjct: 236 TD----SVPSDEESAEGRPHWRKRNIEGKQYLSN 265
>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
Length = 426
Score = 118 bits (295), Expect = 8e-27
Identities = 56/140 (40%), Positives = 87/140 (62%), Gaps = 4/140 (2%)
Query: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
R+R WL QI+S+ PGLIW N+E+ +F+IPWKHA K ++ DA +F++WA+ G++K
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSK 126
G+K +P TWK RCA+N PD EEV D+S+ S +VYR++P + ++K +
Sbjct: 69 EGDK-AEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EEEQKCKLGV 124
Query: 127 SSRDAKSKAKRKSCGDSSPD 146
++ ++ CG S D
Sbjct: 125 ATAGCVNEVTEMECGRSEID 144
>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
Length = 451
Score = 115 bits (289), Expect = 4e-26
Identities = 50/116 (43%), Positives = 77/116 (66%)
Query: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
++R WL QI+S + PGL+W N+E+ IF+IPWKHA K ++ +DA LF++WA+ G+++
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE 122
G +PDP TWK RCA+N D EE+ ++S+ S +VYR++P K K+
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVPEGAKKGAKQ 138
>gi|148833515 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|148833494 interferon regulatory factor 5 isoform d [Homo
sapiens]
Length = 514
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|148833492 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|148833488 interferon regulatory factor 5 isoform c [Homo
sapiens]
Length = 488
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
Length = 504
Score = 109 bits (272), Expect = 4e-24
Identities = 47/110 (42%), Positives = 67/110 (60%)
Query: 2 PITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIH 61
P R+R++PWL Q+NS Q PGL W+N E+ +F IPW+HA +HG + D +F++WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 62 TGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
TG+Y G E DP WKAN RCA+N D + D R+ ++Y +
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV 120
>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
Length = 467
Score = 106 bits (264), Expect = 3e-23
Identities = 41/107 (38%), Positives = 70/107 (65%)
Query: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGR 64
R+R++PWL Q++S PGLIW++++ FQIPWKHA +H ++ +F++WA+ TG+
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 65 YKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM 111
Y+ G +PDP WKA RCA+N + + D ++ + V++Y++
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQV 113
>gi|25282407 interferon-stimulated transcription factor 3, gamma
48kDa [Homo sapiens]
Length = 393
Score = 100 bits (250), Expect = 1e-21
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 9/156 (5%)
Query: 7 RMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYK 66
++R W+ Q+ S Q PG+ W + + +F+IPWKHA K + ++DA F++WAI G+YK
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 67 AGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP-LTKNQRKERKS 125
G+ P WK RCA+N + +EV ++ R + +VY++LPP + Q +K
Sbjct: 71 EGD-TGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQPGTQKV 129
Query: 126 KSSRDAKS-KAKRKSCGDS------SPDTFSDGLSS 154
S R S ++RK D+ SP D L++
Sbjct: 130 PSKRQHSSVSSERKEEEDAMQNCTLSPSVLQDSLNN 165
>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
Length = 427
Score = 81.3 bits (199), Expect = 1e-15
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
M + R+ PWL Q++ Q+ G+ W+NK F+IPWKH + +D +F++WA
Sbjct: 1 MGTPKPRILPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQ-QEDFGIFQAWAE 59
Query: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
TG Y G +PD TWK NFR A+N + +D+S++ ++Y +
Sbjct: 60 ATGAYVPGRDKPDLPTWKRNFRSALNRKEGLRLAEDRSKDP-HDPHKIYEFV-------- 110
Query: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPD 159
S S D+SPDT G +S T D
Sbjct: 111 -----------NSGVGDFSQPDTSPDTNGGGSTSDTQED 138
>gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]
Length = 516
Score = 63.5 bits (153), Expect = 2e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK-DACLFRSWAIHTG 63
R+ WL +I+S GL W+++ F++PWKH A+ D+++ DA +F++WA+ G
Sbjct: 24 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARK--DLSEADARIFKAWAVARG 81
Query: 64 RY----KAGEKEPDPKT-----WKANFRCAMNSLPDIEEVKDQS 98
R+ + G P+ +T WK NFRCA+ S ++D S
Sbjct: 82 RWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 125
>gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]
Length = 503
Score = 63.5 bits (153), Expect = 2e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK-DACLFRSWAIHTG 63
R+ WL +I+S GL W+++ F++PWKH A+ D+++ DA +F++WA+ G
Sbjct: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARK--DLSEADARIFKAWAVARG 68
Query: 64 RY----KAGEKEPDPKT-----WKANFRCAMNSLPDIEEVKDQS 98
R+ + G P+ +T WK NFRCA+ S ++D S
Sbjct: 69 RWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
>gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]
Length = 474
Score = 63.5 bits (153), Expect = 2e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 12/104 (11%)
Query: 5 RMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINK-DACLFRSWAIHTG 63
R+ WL +I+S GL W+++ F++PWKH A+ D+++ DA +F++WA+ G
Sbjct: 11 RVLFGEWLLGEISSGCYEGLQWLDEARTCFRVPWKHFARK--DLSEADARIFKAWAVARG 68
Query: 64 RY----KAGEKEPDPKT-----WKANFRCAMNSLPDIEEVKDQS 98
R+ + G P+ +T WK NFRCA+ S ++D S
Sbjct: 69 RWPPSSRGGGPPPEAETAERAGWKTNFRCALRSTRRFVMLRDNS 112
>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 15 QINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDP 74
QI S GL W + + +F+IPWKH AK G +++W +H G++ G + P
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEAP 66
>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
Length = 362
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 15 QINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDP 74
QI S GL W + + +F+IPWKH AK G +++W +H G++ G + P
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEAP 66
>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
sapiens]
Length = 362
Score = 44.3 bits (103), Expect = 1e-04
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Query: 15 QINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDP 74
QI S GL W + + +F+IPWKH AK G +++W +H G++ G + P
Sbjct: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEAP 66
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 12/84 (14%)
Query: 89 PDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKE------------RKSKSSRDAKSKAK 136
P EEVK Q NK + + + + +N +KE S R+ K K K
Sbjct: 39 PTWEEVKKQLENKKTGSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRK 98
Query: 137 RKSCGDSSPDTFSDGLSSSTLPDD 160
+KSC SS + SD SSS+ +D
Sbjct: 99 KKSCRSSSSSSSSDSSSSSSDSED 122
>gi|89941479 hypothetical protein LOC148137 [Homo sapiens]
Length = 425
Score = 37.0 bits (84), Expect = 0.024
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
Query: 67 AGEKEPDPKTWKA-----NFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRK 121
AG +P+ + A N A +++ ++E+K Q+ + +S++ L ++ R
Sbjct: 147 AGANKPEGRPHTAVPTAVNVTSASHAVAPLQEIK-QNLHTWNSSLLDLETLSLQSRAARL 205
Query: 122 ERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLS--SSTLPDDHSSYTVPGYMQDLEVEQAL 179
++SK+S + S SS T SDGLS S T D S P QA
Sbjct: 206 LKRSKASISSSSSLSPSDASTSSFPTSSDGLSPFSETFIPDSSKGLGPRAPASPAPAQAQ 265
Query: 180 TPALSPCAVSSTLP 193
TP +P SS P
Sbjct: 266 TPTPAPAPASSQAP 279
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.8 bits (81), Expect = 0.053
Identities = 50/201 (24%), Positives = 76/201 (37%), Gaps = 39/201 (19%)
Query: 140 CGDSSPDTFSDGLSSSTLPDDHSS----------YTVPGYMQDLEVEQALTPALSPCAVS 189
C + PDT S PD++ + Y P Y ++ + TP+ P V
Sbjct: 244 CDTAVPDTPQ---SQDPNPDEYYTEGDGEGETYYYEYPYYEDPEDLGKEPTPSKKP--VE 298
Query: 190 STLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKLLEQSEWQPT 249
+ +P E+ P T + +PMP TSE E++ G D + + + P+
Sbjct: 299 AAKETTEVPEELTPTPT------EAAPMPETSEGAGKEEDVGIGDYDYVP--SEDYYTPS 350
Query: 250 NVDGKGYLLNE--------PGVQ---PTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTD- 297
D Y E PG PTS D S P P G+ L+ FT+
Sbjct: 351 PYDDLTYGEGEENPDQPTDPGAGAEIPTST-ADTSNSSNPA--PPPGEGADDLEGEFTEE 407
Query: 298 -LKNMDATWLDSLLTPVRLPS 317
++N+D + D P PS
Sbjct: 408 TIRNLDENYYDPYYDPTSSPS 428
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 35.4 bits (80), Expect = 0.070
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 27/191 (14%)
Query: 91 IEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSD 150
IEE + +R+K SS K+++ ++KS+ +++ +K + S PD S
Sbjct: 152 IEEERASARSKRSSP-----------KSRKGKKKSQENKNKGNKIQDIQLKTSEPDFTSA 200
Query: 151 GLSSSTL--PDDHSSYTVPGYMQDLEVEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSD 208
+ S +D + Q +++ + + P +++ P W E PD +
Sbjct: 201 NMRDSAEGPKEDEEKPSASALEQPATLQEVASQEVPP-ELATPAPAWEPQPE--PDERLE 257
Query: 209 LYNFQVSPMPSTSEATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSV 268
+V+ + E +EDEE + +D +L ++ E + + + NE V+ +
Sbjct: 258 AAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEAS-------MPNENSVKEPEI 310
Query: 269 YGDFSCKEEPE 279
C E+PE
Sbjct: 311 ----RCDEKPE 317
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 35.4 bits (80), Expect = 0.070
Identities = 40/191 (20%), Positives = 81/191 (42%), Gaps = 27/191 (14%)
Query: 91 IEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSD 150
IEE + +R+K SS K+++ ++KS+ +++ +K + S PD S
Sbjct: 152 IEEERASARSKRSSP-----------KSRKGKKKSQENKNKGNKIQDIQLKTSEPDFTSA 200
Query: 151 GLSSSTL--PDDHSSYTVPGYMQDLEVEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSD 208
+ S +D + Q +++ + + P +++ P W E PD +
Sbjct: 201 NMRDSAEGPKEDEEKPSASALEQPATLQEVASQEVPP-ELATPAPAWEPQPE--PDERLE 257
Query: 209 LYNFQVSPMPSTSEATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSV 268
+V+ + E +EDEE + +D +L ++ E + + + NE V+ +
Sbjct: 258 AAACEVNDLGEEEEEEEEEDEEEEEDDDDDELEDEGEEEAS-------MPNENSVKEPEI 310
Query: 269 YGDFSCKEEPE 279
C E+PE
Sbjct: 311 ----RCDEKPE 317
>gi|11225260 DNA topoisomerase I [Homo sapiens]
Length = 765
Score = 33.1 bits (74), Expect = 0.35
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 64 RYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQRKER 123
R+K +KE D + K + +S +E K+++++K S+ + K +RKE
Sbjct: 34 RHKEHKKEKDREKSKHSNSEHKDSEKKHKE-KEKTKHKDGSSEKHKDKHKDRDKEKRKEE 92
Query: 124 KSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVP 167
K ++S DAK K K K G SSP D P+D + P
Sbjct: 93 KVRASGDAKIK-KEKENGFSSPPQIKDE------PEDDGYFVPP 129
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 33.1 bits (74), Expect = 0.35
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 74 PKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLP-PLTKNQRKERK 124
P + A++RC+M+S D + D S+ GS++ LP L K++R +RK
Sbjct: 139 PSSGNASYRCSMSSSADFSDEDDFSQKSGSASPAPGDTLPWNLPKHERSKRK 190
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 33.1 bits (74), Expect = 0.35
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 48 INKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNS-----LPDIEEVKDQSRNKG 102
INK+ R ++ + + K +K+ + KAN + S L ++ +SR
Sbjct: 83 INKNTVTVRGYSQESTKKKLSQKKLVHENPKANEQLNRRSQRLQQLTEVSRRSLRSREIQ 142
Query: 103 SSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRK 138
V + LPP K Q +SKS++ ++ KRK
Sbjct: 143 GQVQAVKQSLPPTKKEQCSSTQSKSNKTSQKHVKRK 178
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 33.1 bits (74), Expect = 0.35
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 278 PEIDSPGGDIGLSLQRVFTDLKNMDATWLDSLLTPVRLPSIQAIPC 323
P ++ G DI L ++++ LK+ ATWL TP + I C
Sbjct: 29 PSVECTGDDIALQMEKMLFPLKSPSATWLSPSSTPWMMDFILTSVC 74
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 32.7 bits (73), Expect = 0.45
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 95 KDQSRNKGSSAVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSS 154
K + + S + +R L K +R++ K +S + KSK KR + FSD
Sbjct: 86 KGEKHHSDSDEEKSHRRLKRKRKKEREKEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDF 145
Query: 155 STLPDDHSSY 164
S H Y
Sbjct: 146 SPSEKGHRKY 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,251,770
Number of Sequences: 37866
Number of extensions: 695029
Number of successful extensions: 2057
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 162
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.