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Search of human proteins with 4503977
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503977 starch binding domain 1 [Homo sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503977 starch binding domain 1 [Homo sapiens] 743 0.0
gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 37 0.036
gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 37 0.036
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 36 0.061
gi|28559039 mediator complex subunit 1 [Homo sapiens] 34 0.18
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens] 33 0.39
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 33 0.39
gi|122937321 UNC homeobox [Homo sapiens] 33 0.39
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 33 0.51
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 33 0.51
gi|239747524 PREDICTED: similar to serum response factor-related... 33 0.51
gi|122937424 one cut homeobox 3 [Homo sapiens] 32 0.67
gi|226437602 NK1 homeobox 2 [Homo sapiens] 32 0.88
gi|239755634 PREDICTED: hypothetical protein [Homo sapiens] 32 0.88
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 32 0.88
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 32 0.88
gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo ... 32 0.88
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 32 0.88
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 32 0.88
gi|14211949 cAMP responsive element binding protein 3-like 3 [Ho... 32 0.88
gi|24431975 hypothetical protein LOC26148 [Homo sapiens] 32 1.1
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 31 1.5
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 31 1.5
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 31 1.5
gi|197304775 TBC1 domain family, member 5 isoform b [Homo sapiens] 31 1.5
gi|7661998 TBC1 domain family, member 5 isoform b [Homo sapiens] 31 1.5
gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens] 31 1.5
gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens] 31 2.0
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 31 2.0
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 31 2.0
>gi|4503977 starch binding domain 1 [Homo sapiens]
Length = 358
Score = 743 bits (1919), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MGAVWSALLVGGGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL 60
MGAVWSALLVGGGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL
Sbjct: 1 MGAVWSALLVGGGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL 60
Query: 61 SPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQF 120
SPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQF
Sbjct: 61 SPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQF 120
Query: 121 PDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEISAKAATCFAEKLPSSNLLK 180
PDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEISAKAATCFAEKLPSSNLLK
Sbjct: 121 PDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEISAKAATCFAEKLPSSNLLK 180
Query: 181 NRAKEEMSLSDLNSQDRVDHEEWEMVPRHSSWGDVGVGGSLKAPVLNLNQGMDNGRSTLV 240
NRAKEEMSLSDLNSQDRVDHEEWEMVPRHSSWGDVGVGGSLKAPVLNLNQGMDNGRSTLV
Sbjct: 181 NRAKEEMSLSDLNSQDRVDHEEWEMVPRHSSWGDVGVGGSLKAPVLNLNQGMDNGRSTLV 240
Query: 241 EARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDVQFIAVTGDHECLGRWNTYIPLH 300
EARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDVQFIAVTGDHECLGRWNTYIPLH
Sbjct: 241 EARGQQVHGKMERVAVMPAGSQQVSVRFQVHYVTSTDVQFIAVTGDHECLGRWNTYIPLH 300
Query: 301 YNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRFLETGHEDKVVHAWWGIH 358
YNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRFLETGHEDKVVHAWWGIH
Sbjct: 301 YNKDGFWSHSIFLPADTVVEWKFVLVENGGVTRWEECSNRFLETGHEDKVVHAWWGIH 358
>gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens]
Length = 2540
Score = 36.6 bits (83), Expect = 0.036
Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 27/192 (14%)
Query: 110 NSREHVPSGQFPDTEAP------ATSETSNSRSYSEVSR-NESLESPMGEWGFQKGQEIS 162
N+ V Q P T P A ++S+ +S +E+ R N +L EW +K
Sbjct: 1239 NAGGKVQESQKPPTLIPEPKDSQANFKSSSEQSLTEMWRPNNNLSKEKTEWHVEKSSG-K 1297
Query: 163 AKAATCFAEKLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWEMVPRHSSWGDVGVGGSLK 222
+AA PSS+ + M L S+DRV G+ K
Sbjct: 1298 LQAAMASVIVRPSSST----KTDSMPAMQLASKDRVSERS--------------SAGAHK 1339
Query: 223 APVLNLNQGMDNGRSTLVEARGQQVHGKMER-VAVMPAGSQQVSVRFQVHYVTSTDVQFI 281
L L + + GR L VH K E+ + GS SV V+ + +T I
Sbjct: 1340 TDCLKLAEAGETGRIILPNVNSDSVHTKSEKNFQAVSQGSVPSSVMSAVNTMCNTKTDVI 1399
Query: 282 AVTGDHECLGRW 293
D + W
Sbjct: 1400 TSAADTTSVSSW 1411
>gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens]
Length = 2303
Score = 36.6 bits (83), Expect = 0.036
Identities = 47/192 (24%), Positives = 69/192 (35%), Gaps = 27/192 (14%)
Query: 110 NSREHVPSGQFPDTEAP------ATSETSNSRSYSEVSR-NESLESPMGEWGFQKGQEIS 162
N+ V Q P T P A ++S+ +S +E+ R N +L EW +K
Sbjct: 1020 NAGGKVQESQKPPTLIPEPKDSQANFKSSSEQSLTEMWRPNNNLSKEKTEWHVEKSSG-K 1078
Query: 163 AKAATCFAEKLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWEMVPRHSSWGDVGVGGSLK 222
+AA PSS+ + M L S+DRV G+ K
Sbjct: 1079 LQAAMASVIVRPSSST----KTDSMPAMQLASKDRVSERS--------------SAGAHK 1120
Query: 223 APVLNLNQGMDNGRSTLVEARGQQVHGKMER-VAVMPAGSQQVSVRFQVHYVTSTDVQFI 281
L L + + GR L VH K E+ + GS SV V+ + +T I
Sbjct: 1121 TDCLKLAEAGETGRIILPNVNSDSVHTKSEKNFQAVSQGSVPSSVMSAVNTMCNTKTDVI 1180
Query: 282 AVTGDHECLGRW 293
D + W
Sbjct: 1181 TSAADTTSVSSW 1192
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 35.8 bits (81), Expect = 0.061
Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 13/136 (9%)
Query: 24 RGGPG-------DTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHL 76
RG PG + G G ++ K+ P G+ G GP G+ P
Sbjct: 436 RGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPH 495
Query: 77 QESNGHLISKTKDLGKLQAASWRLQNPSREVCDN---SREHVPSGQFPDTEAPATSETSN 133
S S +K + ++A R +PSR SR+ G+ +EA AT
Sbjct: 496 PRSWSSSRSPSKS--RSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRR 553
Query: 134 SRSYSEVSRNESLESP 149
SRSYS + R +SP
Sbjct: 554 SRSYSPI-RKRRRDSP 568
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 34.3 bits (77), Expect = 0.18
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Query: 53 HQSGSSG--LSPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQNPSREVCDN 110
H SGS G L+ G G+E K ++E NG S G R + PS +
Sbjct: 949 HHSGSQGPLLTTGDLGKEKTQK--RVKEGNGTSNSTLSGPGLDSKPGKRSRTPSND--GK 1004
Query: 111 SREHVPSGQFPDTEAPATSETSNSRSYSEVSRNESLESP 149
S++ P + DTE + S +S++R ++ + +SP
Sbjct: 1005 SKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSP 1043
>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
Length = 463
Score = 33.1 bits (74), Expect = 0.39
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 180 KNRAKEEMSLSDLNSQD----RVDHEEWEMVPRHSSWGDVGVGGSLKAPVLNLNQGMDNG 235
+ RA+ E + +D R+ E + P+ S+GD+ + S PV N+ D
Sbjct: 217 RERAESEAECATSGHEDMPVERILEAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQ 276
Query: 236 RSTLVEARGQQVHGK----MERVAVMPAGSQQVSVRFQVHYVTSTDVQFIAVTGDH 287
TLVE + H ++V ++ AG ++ + H S + TG H
Sbjct: 277 LFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLATGLH 332
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 33.1 bits (74), Expect = 0.39
Identities = 21/46 (45%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLS--PGPSGQ 67
RG PGDTGKDG + P G PG Q G G PGP G+
Sbjct: 195 RGPPGDTGKDG--PRGAQGPAGPKGEPG--QDGEMGPKGPPGPKGE 236
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 33.1 bits (74), Expect = 0.39
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 16 GALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQ 67
G L + D+G G + + + P A PG H SG++G +P P G+
Sbjct: 223 GGLSLHSAPSSDSDSGGGGLSPEPPEPPPPAAKGPGAHASGAAGTAPAPPGE 274
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 25 GGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNG 81
G PG G+ G+A Q+ DA G P G +PGP G VT P+ + + G
Sbjct: 843 GQPGAKGEQGEAGQKGDAGAPGPQGPSG--------APGPQGPTGVTGPKGARGAQG 891
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 25 GGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNG 81
G PG G+ G+A Q+ DA G P G +PGP G VT P+ + + G
Sbjct: 774 GQPGAKGEQGEAGQKGDAGAPGPQGPSG--------APGPQGPTGVTGPKGARGAQG 822
>gi|239747524 PREDICTED: similar to serum response factor-related
protein C4 [Homo sapiens]
Length = 434
Score = 32.7 bits (73), Expect = 0.51
Identities = 43/201 (21%), Positives = 71/201 (35%), Gaps = 27/201 (13%)
Query: 12 GGLAGALFVWLLRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVT 71
GG +G+ F GG G G+ + GG+ G S + G GQ V
Sbjct: 106 GGGSGSSF-----GGSGSYNDFGNYNNQSS---NFGPTKGGNFGGRSSVPCGGGGQYFV- 156
Query: 72 KPEHLQESNGHLIS----------KTKDLGKLQAASWRLQNPSREVCD--NSREHVP-SG 118
KP++ G S K K+ A WR + + + N +EH
Sbjct: 157 KPQNQGGYGGSSSSRHYQDVLASPKLKEAAPGSAERWRRAQAAAYIVEALNKKEHRGCDS 216
Query: 119 QFPDTEAPATSETSN-----SRSYSEVSRNESLESPMGEWGFQKGQEISAKAATCFAEKL 173
PDT T T + + + +N ++ + F + K+ +
Sbjct: 217 SDPDTSCVLTPYTEEKYKKINEEFDNMMQNHNIAPGLPPQNFSMSVTVPVKSPNALSYTN 276
Query: 174 PSSNLLKNRAKEEMSLSDLNS 194
P S+L+ +L+DLN+
Sbjct: 277 PGSSLVSPSLAASSTLTDLNT 297
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 32.3 bits (72), Expect = 0.67
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 23 LRGGPGDTGKDGDAEQEKD---APLGGAAIPGGHQSGSSGLSPGPSG 66
L GG G TG G APLGG A G H G PG SG
Sbjct: 263 LPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSG 309
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 32.0 bits (71), Expect = 0.88
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 31 GKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSG 66
G DG A+ AP GAA GG G SG SPGP G
Sbjct: 224 GADGAAQVGGGAPQPGAA--GGGGGGGSGGSPGPPG 257
>gi|239755634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 449
Score = 32.0 bits (71), Expect = 0.88
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 23 LRGGPGDTGKDGDAEQEKDAPLGG---AAIPGGHQ--------SGSSGLSPGPSGQELVT 71
LR G G G + D G AA+ G H+ S SS LSPGP Q +
Sbjct: 160 LRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSS 219
Query: 72 KPEHLQESNGHLISKTKDLGKLQAASWRLQNP-SREVCDNSR--EHVPSGQFPDTEAP 126
E L+ + H S ++ GK R Q P R +C S H P P P
Sbjct: 220 LNETLRSAAAHAESSARECGK------RTQRPEQRFLCRGSSFCGHRPQRLHPGRPLP 271
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 32.0 bits (71), Expect = 0.88
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 31 GKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSG 66
G DG A+ AP GAA GG G SG SPGP G
Sbjct: 246 GADGAAQVGGGAPQPGAA--GGGGGGGSGGSPGPPG 279
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 32.0 bits (71), Expect = 0.88
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 31 GKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSG 66
G DG A+ AP GAA GG G SG SPGP G
Sbjct: 246 GADGAAQVGGGAPQPGAA--GGGGGGGSGGSPGPPG 279
>gi|239744429 PREDICTED: hypothetical protein XP_002343157 [Homo
sapiens]
Length = 449
Score = 32.0 bits (71), Expect = 0.88
Identities = 36/118 (30%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 23 LRGGPGDTGKDGDAEQEKDAPLGG---AAIPGGHQ--------SGSSGLSPGPSGQELVT 71
LR G G G + D G AA+ G H+ S SS LSPGP Q +
Sbjct: 160 LRSGRGCAGAARGPDASLDTRREGWPRAAVVGRHEARRLKPGVSVSSSLSPGPPLQRSSS 219
Query: 72 KPEHLQESNGHLISKTKDLGKLQAASWRLQNP-SREVCDNSR--EHVPSGQFPDTEAP 126
E L+ + H S ++ GK R Q P R +C S H P P P
Sbjct: 220 LNETLRSAAAHAESSARECGK------RTQRPEQRFLCRGSSFCGHRPQRLHPGRPLP 271
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 32.0 bits (71), Expect = 0.88
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 31 GKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSG 66
G DG A+ AP GAA GG G SG SPGP G
Sbjct: 246 GADGAAQVGGGAPQPGAA--GGGGGGGSGGSPGPPG 279
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 32.0 bits (71), Expect = 0.88
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 25 GGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNG 81
G PG G G+ + +GG P G+ GS+G PGP G PE LQ G
Sbjct: 2689 GQPGPKGDQGEKGERGTPGIGGFPGPSGND-GSAG-PPGPPGSVGPRGPEGLQGQKG 2743
>gi|14211949 cAMP responsive element binding protein 3-like 3 [Homo
sapiens]
Length = 461
Score = 32.0 bits (71), Expect = 0.88
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 104 SREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEISA 163
SR + +++ V + P +EAP R ++ +R ES SP +WGFQ +
Sbjct: 360 SRTLHNDAASRVAADAVPGSEAPGP------RPEADTTREESPGSPGADWGFQDTANL-- 411
Query: 164 KAATCFAEKLPSSNLLKNRAKE 185
T E+L ++ L+ A E
Sbjct: 412 ---TNSTEELDNATLVLRNATE 430
>gi|24431975 hypothetical protein LOC26148 [Homo sapiens]
Length = 1247
Score = 31.6 bits (70), Expect = 1.1
Identities = 40/163 (24%), Positives = 59/163 (36%), Gaps = 23/163 (14%)
Query: 39 EKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASW 98
E+D P GG+ + SG S L+ E + HL+ T+
Sbjct: 316 EEDLPEGGSTVSAPTASGMSSPEHNQPPVALLDTEEMSVPQDCHLLPSTESFS------- 368
Query: 99 RLQNPSREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKG 158
S +V SR H P E+P SE +S LE PM +
Sbjct: 369 --GGVSEDVI--SRPHSPPEIVSREESPQCSENQSSPM--------GLEPPMSLGKAEDN 416
Query: 159 QEISAKAATCFAEKLPSSNLLKNRAKEEMSLSDLNSQDRVDHE 201
Q ISA+ + ++L LL KE + +D N + + E
Sbjct: 417 QSISAEVESGDTQELNVDPLL----KESSTFTDENPSETEESE 455
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL-----SPGPSGQE 68
RG PGD G GD+ Q P G PG G G PGP G E
Sbjct: 489 RGDPGDAGPRGDSGQ--PGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL-----SPGPSGQE 68
RG PGD G GD+ Q P G PG G G PGP G E
Sbjct: 489 RGDPGDAGPRGDSGQ--PGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGL-----SPGPSGQE 68
RG PGD G GD+ Q P G PG G G PGP G E
Sbjct: 489 RGDPGDAGPRGDSGQ--PGPKGDPGRPGFSYPGPRGAPGEKGEPGPRGPE 536
>gi|197304775 TBC1 domain family, member 5 isoform b [Homo sapiens]
Length = 795
Score = 31.2 bits (69), Expect = 1.5
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 46 GAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQN--P 103
G +PGG+ S SS + P+ HLQ+ + + L K ++ +L
Sbjct: 479 GGPVPGGNSSSSSSVVI-PTRTSAEAPSHHLQQQQ-----QQQRLMKSESMPVQLNKGLS 532
Query: 104 SREVCDN-SREHVPSGQFPDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEIS 162
S+ + + S E +P G+ T +P +S T +S +SR+ S MG +K E
Sbjct: 533 SKNISSSPSVESLPGGR-EFTGSPPSSATKKDSFFSNISRSRSHSKTMG----RKESEEE 587
Query: 163 AKAATCFAE-KLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWE 204
+A F + +L + + + M +N QD + E E
Sbjct: 588 LEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLE 630
>gi|7661998 TBC1 domain family, member 5 isoform b [Homo sapiens]
Length = 795
Score = 31.2 bits (69), Expect = 1.5
Identities = 40/163 (24%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 46 GAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNGHLISKTKDLGKLQAASWRLQN--P 103
G +PGG+ S SS + P+ HLQ+ + + L K ++ +L
Sbjct: 479 GGPVPGGNSSSSSSVVI-PTRTSAEAPSHHLQQQQ-----QQQRLMKSESMPVQLNKGLS 532
Query: 104 SREVCDN-SREHVPSGQFPDTEAPATSETSNSRSYSEVSRNESLESPMGEWGFQKGQEIS 162
S+ + + S E +P G+ T +P +S T +S +SR+ S MG +K E
Sbjct: 533 SKNISSSPSVESLPGGR-EFTGSPPSSATKKDSFFSNISRSRSHSKTMG----RKESEEE 587
Query: 163 AKAATCFAE-KLPSSNLLKNRAKEEMSLSDLNSQDRVDHEEWE 204
+A F + +L + + + M +N QD + E E
Sbjct: 588 LEAQISFLQGQLNDLDAMCKYCAKVMDTHLVNIQDVILQENLE 630
>gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens]
Length = 963
Score = 31.2 bits (69), Expect = 1.5
Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 30/149 (20%)
Query: 29 DTGKDGDAEQEK-----DAPLG---GAAIPGGHQS---------GSSGLSPGPSGQELVT 71
D+G +G+A + D+P G +PG S G+ GL GP GQ+ T
Sbjct: 20 DSGVEGEAPSSETGTSLDSPSAYPQGPLVPGSSLSPDHYEHTSVGAYGLYSGPPGQQQRT 79
Query: 72 KPEHLQESNGHL--------ISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQFPDT 123
+ LQ S L I +++ L + S LQ+ E+ E G+
Sbjct: 80 RRPKLQHSTSILRKQAEEEAIKRSRSLSESYELSSDLQDKQVEML----ERKYGGRLVTR 135
Query: 124 EAPATSETSNSRSYSEVSRNESLESPMGE 152
A T +T+ R Y E L S M E
Sbjct: 136 HAARTIQTA-FRQYQMNKNFERLRSSMSE 163
>gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens]
Length = 694
Score = 30.8 bits (68), Expect = 2.0
Identities = 55/219 (25%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQELVTKPEHLQESNGHL 83
R GP D G++ A E A + A GG S +G+ L K E + S+ H
Sbjct: 161 RSGPLDAGEEEKAPAEPTAQVPDA---GGCASEENGV--------LREKHEAVDHSSQHE 209
Query: 84 ISKTKDLGKLQAASWRLQNPSREVCDNSREHVPSGQFPDTEAPATSETSNSRSYSEVSRN 143
++ + S + +N ++ D+ + + PD EA T+E+ N R + +
Sbjct: 210 ENEER-------VSAQKENSLQQNDDDENK---IAEKPDWEAEKTTESRNERHLNGTDTS 259
Query: 144 ESLESPMGEWGFQKGQEISAKAATCFAEKLPS--SNLLKNRAKEEMSLSDLNSQDRVDHE 201
SLE Q E S + + LP S+ + + A ++ S SQD HE
Sbjct: 260 FSLEDLFQLLSSQ--PENSLEGISLGDIPLPGSISDGMNSSAHYHVNFSQAISQDVNLHE 317
Query: 202 EWEMVPRHSSWGDVGVGGS-LKAPVLNLNQGMDNGRSTL 239
+ P ++ D S + P L LN N TL
Sbjct: 318 AILLCPNNTFRRDPTARTSQSQEPFLQLNSHTTNPEQTL 356
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 23 LRGGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQE 68
L G PG G+DG A ++ +A L GA P G PGP G E
Sbjct: 511 LPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKG---QPGPKGDE 553
Score = 28.9 bits (63), Expect = 7.4
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 25 GGPGDTGKDGDAEQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQ---ELVTKPEHLQ 77
G PG G G E + P G +PG G PGP G+ E T P+ LQ
Sbjct: 372 GRPGAPGPIGVGEPGQPGPRGPEGVPGERGLPGEGF-PGPKGEKGSEGPTGPQGLQ 426
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 30.8 bits (68), Expect = 2.0
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 24 RGGPGDTGKDGDAEQEKDAPLGGAAIPG-GHQSGSSGLSP--GPSGQE 68
RG PGDTGKDG P G +PG + G GL GP GQ+
Sbjct: 206 RGPPGDTGKDG--------PRGMPGVPGEPGKPGEQGLMGPLGPPGQK 245
Score = 28.5 bits (62), Expect = 9.7
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 24 RGGPGDTGKDGDA-EQEKDAPLGGAAIPGGHQSGSSGLSPGPSGQ 67
+G PG+ G+ GDA E G PG +G G PG SG+
Sbjct: 278 KGEPGEQGEKGDAGENGPKGDTGEKGDPGSSAAGIKG-EPGESGR 321
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,646,241
Number of Sequences: 37866
Number of extensions: 796610
Number of successful extensions: 2529
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 2384
Number of HSP's gapped (non-prelim): 268
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.