JMJD1C 2199

Name: JMJD1C	Sequence: fasta or formatted (2540aa)		NCBI GI: 118600981
Description: jumonji domain containing 1C isoform a		Referenced in: Histones, Related Proteins, and Modifying Enzymes Skin and Related Tissues Thyroid and Thyroid Hormone Receptor
Other entries for this name: alt prot [2303aa] jumonji domain containing 1C isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 136 5 C cysteine 1.4 36 2 D aspartate 5.4 137 2 E glutamate 7.3 185 3 F phenylalanine 2.2 57 2 G glycine 4.2 107 2 H histidine 3.9 99 2 I isoleucine 4.6 116 2 K lysine 8.5 215 3 L leucine 8.1 205 2 M methionine 1.7 42 2 N asparagine 5.4 138 3 P proline 6.2 158 3 Q glutamine 4.8 122 5 R arginine 4.4 112 3 S serine 11.4 290 5 T threonine 5.6 141 3 V valine 6.3 161 2 W tryptophan 1.3 34 1 Y tyrosine 1.9 49 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 jumonji domain containing 1C isoform a JMJD1C 0.902 jumonji domain containing 1C isoform b KDM3B 0.159 jumonji domain containing 1B KDM3A 0.144 jumonji domain containing 1A KDM3A 0.144 jumonji domain containing 1A HR 0.042 hairless protein isoform a HR 0.032 hairless protein isoform b BOD1L 0.007 biorientation of chromosomes in cell division 1-like... DSPP 0.006 dentin sialophosphoprotein preproprotein RBBP6 0.005 retinoblastoma-binding protein 6 isoform 2 RBBP6 0.005 retinoblastoma-binding protein 6 isoform 1 LOC729792 0.005 PREDICTED: hypothetical protein LOC100294238 0.005 PREDICTED: hypothetical protein LOC100294204 0.005 PREDICTED: hypothetical protein LOC100294136 0.005 PREDICTED: hypothetical protein LOC100294091 0.005 PREDICTED: hypothetical protein LOC729792 0.005 PREDICTED: hypothetical protein LOC730401 0.005 PREDICTED: hypothetical protein LOC729792 0.005 PREDICTED: hypothetical protein LOC100294501 0.005 PREDICTED: hypothetical protein LOC100294249 0.005 PREDICTED: hypothetical protein XP_002344067 TRAF3IP1 0.005 TNF receptor-associated factor 3 interacting protein... CYLC1 0.005 cylicin, basic protein of sperm head cytoskeleton 1... TRAF3IP1 0.005 TNF receptor-associated factor 3 interacting protei... FAM133A 0.005 hypothetical protein LOC286499 MUC17 0.005 mucin 17 LOC283685 0.005 PREDICTED: golgi autoantigen, golgin subfamily a-li... MUC21 0.005 mucin 21 SFRS12 0.005 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.005 splicing factor, arginine/serine-rich 12 isoform b [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.