Guide to the Human Genome
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Name: TBC1D5 Sequence: fasta or formatted (795aa) NCBI GI: 197304775
Description:

TBC1 domain family, member 5 isoform b

Referenced in:

Rab

Other entries for this name:
alt prot [817aa] TBC1 domain family, member 5 isoform a
alt mRNA [795aa] TBC1 domain family, member 5 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         41           1
 C cysteine            1.3         10           1
 D aspartate           5.5         44           3
 E glutamate           6.0         48           3
 F phenylalanine       4.2         33           2
 G glycine             6.2         49           2
 H histidine           2.5         20           2
 I isoleucine          5.5         44           1
 K lysine              5.4         43           2
 L leucine            10.3         82           2
 M methionine          2.5         20           1
 N asparagine          4.9         39           3
 P proline             5.4         43           2
 Q glutamine           6.8         54           7
 R arginine            4.9         39           2
 S serine             11.7         93           6
 T threonine           3.8         30           1
 V valine              4.4         35           2
 W tryptophan          1.0          8           1
 Y tyrosine            2.5         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TBC1 domain family, member 5 isoform b 
TBC1D5                1.000   TBC1 domain family, member 5 isoform b 
TBC1D5                0.992   TBC1 domain family, member 5 isoform a 
TBC1D13               0.056   TBC1 domain family, member 13 
TBCKL                 0.020   TBC domain-containing protein kinase-like 
TBC1D22B              0.020   TBC1 domain family, member 22B 
TBC1D22A              0.019   TBC1 domain family, member 22A 
TBC1D17               0.017   TBC1 domain family, member 17 
TBC1D15               0.013   TBC1 domain family, member 15 isoform 2 
TBC1D15               0.013   TBC1 domain family, member 15 isoform 3 
TBC1D15               0.013   TBC1 domain family, member 15 isoform 1 
TBC1D16               0.013   TBC1 domain family, member 16 
TBC1D10B              0.012   TBC1 domain family, member 10B 
TBC1D10C              0.012   TBC1 domain family, member 10C 
TBC1D10A              0.011   TBC1 domain family, member 10A 
TBC1D1                0.011   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
SGSM1                 0.011   RUN and TBC1 domain containing 2 isoform 4 
SGSM1                 0.011   RUN and TBC1 domain containing 2 isoform 3 
SGSM1                 0.011   RUN and TBC1 domain containing 2 isoform 2 
SGSM1                 0.011   RUN and TBC1 domain containing 2 isoform 1 
RABGAP1               0.010   RAB GTPase activating protein 1 
TBC1D12               0.010   TBC1 domain family, member 12 
RABGAP1L              0.009   RAB GTPase activating protein 1-like isoform A [Homo...
TBC1D4                0.009   TBC1 domain family, member 4 
KIAA1543              0.008   NEZHA isoform 2 
KIAA1543              0.008   NEZHA isoform 1 
TBC1D14               0.008   TBC1 domain family, member 14 isoform b 
TBC1D14               0.008   TBC1 domain family, member 14 isoform a 
TBC1D14               0.008   TBC1 domain family, member 14 isoform a 
C14orf4               0.008   chromosome 14 open reading frame 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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