Guide to the Human Genome
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Name: WDSUB1 Sequence: fasta or formatted (476aa) NCBI GI: 189571681
Description:

WD repeat, sterile alpha motif and U-box domain containing 1

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt mRNA [476aa] WD repeat, sterile alpha motif and U-box domain containing 1
alt mRNA [476aa] WD repeat, sterile alpha motif and U-box domain containing 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         28           2
 C cysteine            4.8         23           3
 D aspartate           6.5         31           2
 E glutamate           4.8         23           2
 F phenylalanine       4.2         20           2
 G glycine             5.5         26           1
 H histidine           3.2         15           1
 I isoleucine          4.2         20           1
 K lysine              6.1         29           3
 L leucine            11.1         53           3
 M methionine          2.3         11           1
 N asparagine          3.4         16           2
 P proline             3.4         16           1
 Q glutamine           3.6         17           1
 R arginine            3.4         16           2
 S serine              9.9         47           2
 T threonine           8.0         38           2
 V valine              6.1         29           2
 W tryptophan          1.9          9           1
 Y tyrosine            1.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat, sterile alpha motif and U-box domain con... 
WDSUB1                1.000   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                1.000   WD repeat, sterile alpha motif and U-box domain con...
WDR38                 0.098   WD repeat domain 38 
WDR51A                0.083   WD repeat domain 51A isoform 2 
WDR51A                0.083   WD repeat domain 51A isoform 1 
WDR69                 0.082   WD repeat domain 69 
WDR51A                0.076   WD repeat domain 51A isoform 3 
WDR51B                0.075   WD repeat domain 51B 
SNRNP40               0.071   WD repeat domain 57 (U5 snRNP specific) 
WDR61                 0.071   WD repeat domain 61 
APAF1                 0.068   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.068   apoptotic peptidase activating factor 1 isoform b [Ho...
WDR88                 0.067   PQQ repeat and WD repeat domain containing 
PAFAH1B1              0.066   platelet-activating factor acetylhydrolase, isoform I...
APAF1                 0.066   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.066   apoptotic peptidase activating factor 1 isoform a [Ho...
WDR5                  0.066   WD repeat domain 5 
WDR5                  0.066   WD repeat domain 5 
TEP1                  0.065   telomerase-associated protein 1 
WDR5B                 0.065   WD repeat domain 5B 
FBXW7                 0.061   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.061   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.061   F-box and WD repeat domain containing 7 isoform 2 [H...
TAF5                  0.060   TBP-associated factor 5 
TBL1XR1               0.058   transducin (beta)-like 1 X-linked receptor 1 
WSB1                  0.056   WD repeat and SOCS box-containing 1 isoform 1 
WSB1                  0.056   WD repeat and SOCS box-containing 1 isoform 2 
KATNB1                0.055   katanin p80 subunit B 1 
TBL1X                 0.053   transducin beta-like 1X isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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