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Search of human proteins with 44890062
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
(1045 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|112807226 hypothetical protein LOC91748 [Homo sapiens] 2119 0.0
gi|44890062 hypothetical protein LOC91748 [Homo sapiens] 2119 0.0
gi|15812226 transcriptional regulating factor 1 [Homo sapiens] 328 2e-89
gi|210031154 zinc finger protein 541 [Homo sapiens] 274 4e-73
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 65 3e-10
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 65 3e-10
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 62 3e-09
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 62 3e-09
gi|171543895 ataxin 2 [Homo sapiens] 59 3e-08
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 58 4e-08
gi|55750053 atrophin-1 [Homo sapiens] 58 4e-08
gi|55750041 atrophin-1 [Homo sapiens] 58 4e-08
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 57 7e-08
gi|7661892 REST corepressor 1 [Homo sapiens] 57 9e-08
gi|56549696 E1A binding protein p400 [Homo sapiens] 57 1e-07
gi|94721313 mesoderm induction early response 1, family member 3... 55 3e-07
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 55 3e-07
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 55 3e-07
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 55 3e-07
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 55 3e-07
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 55 4e-07
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 55 4e-07
gi|91208420 bassoon protein [Homo sapiens] 54 1e-06
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 53 1e-06
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 53 1e-06
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 53 2e-06
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 52 2e-06
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 52 3e-06
gi|209977084 REST corepressor 3 isoform c [Homo sapiens] 52 4e-06
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 52 4e-06
>gi|112807226 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 2119 bits (5491), Expect = 0.0
Identities = 1045/1045 (100%), Positives = 1045/1045 (100%)
Query: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ 60
MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ
Sbjct: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ 60
Query: 61 PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS
Sbjct: 61 PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
Query: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR
Sbjct: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
Query: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV
Sbjct: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
Query: 241 AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH 300
AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH
Sbjct: 241 AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH 300
Query: 301 LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL 360
LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL
Sbjct: 301 LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL 360
Query: 361 DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG 420
DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG
Sbjct: 361 DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG 420
Query: 421 REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ 480
REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ
Sbjct: 421 REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ 480
Query: 481 NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE 540
NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE
Sbjct: 481 NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE 540
Query: 541 AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP 600
AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP
Sbjct: 541 AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP 600
Query: 601 KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL 660
KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL
Sbjct: 601 KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL 660
Query: 661 SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE 720
SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE
Sbjct: 661 SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE 720
Query: 721 PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI 780
PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI
Sbjct: 721 PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI 780
Query: 781 FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL 840
FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL
Sbjct: 781 FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL 840
Query: 841 FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ 900
FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ
Sbjct: 841 FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ 900
Query: 901 EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE 960
EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE
Sbjct: 901 EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE 960
Query: 961 RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE 1020
RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE
Sbjct: 961 RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE 1020
Query: 1021 KKKKTETFSKTQNQENTFPCKKCGR 1045
KKKKTETFSKTQNQENTFPCKKCGR
Sbjct: 1021 KKKKTETFSKTQNQENTFPCKKCGR 1045
>gi|44890062 hypothetical protein LOC91748 [Homo sapiens]
Length = 1045
Score = 2119 bits (5491), Expect = 0.0
Identities = 1045/1045 (100%), Positives = 1045/1045 (100%)
Query: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ 60
MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ
Sbjct: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ 60
Query: 61 PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS
Sbjct: 61 PVELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
Query: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR
Sbjct: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
Query: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV
Sbjct: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
Query: 241 AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH 300
AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH
Sbjct: 241 AAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH 300
Query: 301 LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL 360
LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL
Sbjct: 301 LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSAL 360
Query: 361 DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG 420
DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG
Sbjct: 361 DGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPNG 420
Query: 421 REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ 480
REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ
Sbjct: 421 REREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELASLQ 480
Query: 481 NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE 540
NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE
Sbjct: 481 NAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDPTE 540
Query: 541 AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP 600
AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP
Sbjct: 541 AAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKP 600
Query: 601 KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL 660
KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL
Sbjct: 601 KQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPIL 660
Query: 661 SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE 720
SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE
Sbjct: 661 SPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIE 720
Query: 721 PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI 780
PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI
Sbjct: 721 PRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDLLTAACSSI 780
Query: 781 FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL 840
FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL
Sbjct: 781 FPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKL 840
Query: 841 FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ 900
FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ
Sbjct: 841 FNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQ 900
Query: 901 EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE 960
EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE
Sbjct: 901 EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRE 960
Query: 961 RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE 1020
RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE
Sbjct: 961 RSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSE 1020
Query: 1021 KKKKTETFSKTQNQENTFPCKKCGR 1045
KKKKTETFSKTQNQENTFPCKKCGR
Sbjct: 1021 KKKKTETFSKTQNQENTFPCKKCGR 1045
>gi|15812226 transcriptional regulating factor 1 [Homo sapiens]
Length = 1200
Score = 328 bits (841), Expect = 2e-89
Identities = 302/978 (30%), Positives = 426/978 (43%), Gaps = 134/978 (13%)
Query: 119 SSWQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRY 178
S +QQ P QP P T +L + HP G YY++ + L +
Sbjct: 199 SRYQQVPQQPHPGFTGGLSKPAL----QVGQHPTQG-HLYYDYQQPLAQ----------- 242
Query: 179 VRPMMPQKVQLEVGRP-QAP-LNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPP 236
V ++ G+P QAP + S H + +Q P Q Q A +++ Q + P
Sbjct: 243 --------VPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQQAGQQRISMQEIQTQPQQ 294
Query: 237 PNPVAAFPPQKQQQQQQPQQQQQQQQAALPQ----MPLFENFYSMPQQ------PS--QQ 284
P PP +QQQ QQ Q QQ+Q +PQ P+ ++ QQ PS +
Sbjct: 295 IRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQHLQEQQQQQMHLQPPSYHRD 354
Query: 285 PQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPR 344
P + + A + L S Y P P +P +++ L + R
Sbjct: 355 PHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDR 414
Query: 345 RSRR-LSKEGILPPSALDGAGTQPGQEATG-NLFLHHWPLQQPPPGSLGQPHPEALGF-P 401
+++ LS G L P G G + T + L H PL P L P+ P
Sbjct: 415 QAQAMLSSHGDLGPPDT-GMGDPASSDLTRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSP 473
Query: 402 LELRESQLLPDGERLAPNGREREAPAMGS-EEGMRAVSTGDCGQVLRGGVIQSTRRRRRA 460
+ LPDG R P E G+ E A + C L+
Sbjct: 474 SAMWPQMHLPDG-RAQPGSPESSGQPKGAFGEQFDAKNKLTCSICLK------------- 519
Query: 461 SQEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDS 520
E L + A EE K + P + E
Sbjct: 520 --EFKNLPALNGHMRSHGGMRASPNLKQEEGEKVLPPQPQPPLPPPPPPPPPPQLPPEAE 577
Query: 521 GMVPLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPE--QNPA-----EHKPSVIVTRRRST 573
+ P+++PVSVPV+ + P ++Q G + P PA + P + + R+
Sbjct: 578 SLTPMVMPVSVPVKLLPPKPSSQ-GFTNSTVAAPSARDKPASSMSDDEMPVLEIPRKHQP 636
Query: 574 RIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKAGTFIAPPV-YSNITPYQS 632
+P + + K K R RPEPL IP P YS T YQS
Sbjct: 637 SVPKAEEPLKTVQ-----------EKKKFRHRPEPLFIPPPPSYNPNPAASYSGATLYQS 685
Query: 633 HLRSPVRLADHPS-ERSFELPPYTPPPILSPVREGSGLYFNAIISTSTIPAPP--PITPK 689
LRSP L DH + + ELPPYTPPP+LSPVR+GSGL+ N +IS A P P+TP
Sbjct: 686 QLRSPRVLGDHLLLDPTHELPPYTPPPMLSPVRQGSGLFSNVLISGHGPGAHPQLPLTPL 745
Query: 690 SAHRTLLRTNSAEVTPPVLSVM---GEATPVSIEPRINVGSRFQAEIPLMRDRALAAADP 746
+ +L S + ++V GE T V +EPRIN+G RFQAEIP ++D + A D
Sbjct: 746 TPTPRVLLCRSNSIDGSNVTVTPGPGEQT-VDVEPRINIGLRFQAEIPELQDISALAQDT 804
Query: 747 HKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILETL 806
HKA LVW+PW +LE+ + Q++VE+LL CSS PG GTN E ALH L E++GD++ L
Sbjct: 805 HKATLVWKPWPELEN-HDLQQRVENLLNLCCSSALPGGGTNSEFALHSLFEAKGDVMVAL 863
Query: 807 NKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQ 866
LLL+KP+R HPLA YHY GSD+W ERKLFNK +A Y KDF VQK++++KTVAQ
Sbjct: 864 EMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQ 923
Query: 867 CVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSE 926
CVE+YYT+KK +++GR ++ D +++EE E++ E
Sbjct: 924 CVEYYYTWKKIMRLGRKHRTRLAEI-IDDCVTSEEEEELE-------------------E 963
Query: 927 ERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGRERSRRAAAVKATQTLQANESASDILIL 986
E E E ++ KE E EVP+ E A LQA S I
Sbjct: 964 EEEEDPEEDRKSTKEEESEVPKSPEPPPVP--------VLAPTEGPPLQALGQPSGSFIC 1015
Query: 987 RSHESNAPGSAGGQASEKPREGTG-----KSRRALPFSEKK-----------KKTETFSK 1030
A S+ + R G K+R A+P ++K K + + S
Sbjct: 1016 EMPNCGAVFSSRQALNGHARIHGGTNQVTKARGAIPSGKQKPGGTQSGYCSVKSSPSHST 1075
Query: 1031 TQNQEN---TFPCKKCGR 1045
T + + FPCK+CG+
Sbjct: 1076 TSGETDPTTIFPCKECGK 1093
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 274 bits (700), Expect = 4e-73
Identities = 179/462 (38%), Positives = 240/462 (51%), Gaps = 74/462 (16%)
Query: 513 TKRAREDSGMVPLIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRS 572
TK+ + + PL++P S+PV V H S+ + S
Sbjct: 900 TKKPLDPTAAAPLVVPQSIPVVPV----------------------TRHIGSMAMMEWCS 937
Query: 573 TRIPGTDA-----QAQAEDMNVKLEGEPSV-RKPKQRPRPEPLIIPTKAGTFIAPPVYSN 626
+ T Q Q +D + E S RK K+RP P P AG
Sbjct: 938 RWLQATTCGSKLLQGQEKDGEERDSKESSQQRKRKKRPPPSTAGEPGPAGC--------- 988
Query: 627 ITPYQSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYFNAIISTSTIPAPPPI 686
+QS LRSP+ L D + F+ PYTPPP+LSP+REGSG+YFN + STST +P
Sbjct: 989 ---HQSRLRSPMFLVDCLLKGLFQCSPYTPPPMLSPIREGSGVYFNTLCSTSTQASPDQ- 1044
Query: 687 TPKSAHRTLLRTNSAEVTPPV-LSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 745
L+ + +V + V+ + T +SIEP IN+GSRFQAEIP +++R+LA D
Sbjct: 1045 --------LISSMLDQVDGSFGICVVKDDTKISIEPHINIGSRFQAEIPELQERSLAGTD 1096
Query: 746 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 805
H A LVW+PW D+ S E Q +V +L ACSS+ PG GTN ELALHCLHE++G++
Sbjct: 1097 EHVASLVWKPWGDMMISSETQDRVTELCNVACSSVMPGGGTNLELALHCLHEAQGNVQVA 1156
Query: 806 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 865
L LLL+ P +P H LA Y YTGSD W E++LF K +KKDF+L+ K+IQTKTVA
Sbjct: 1157 LETLLLRGPHKPRTHLLADYRYTGSDVWTPIEKRLFKKAFYAHKKDFYLIHKMIQTKTVA 1216
Query: 866 QCVEFYYTYKKQVKI--GRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRES 923
QCVE+YY +KK +K GR L EK + E E +T +K P P RE
Sbjct: 1217 QCVEYYYIWKKMIKFDCGRAPGL---------EKRVKREPEEVERTEEKVPCSP---RER 1264
Query: 924 PSEERLEPKREVKEPRKE---------GEEEVPEIQEKEEQE 956
PS PK + K R+E G + PE+ E +
Sbjct: 1265 PSHHP-TPKLKTKSYRRESILSSSPNAGSKRTPELLGSAESQ 1305
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 65.1 bits (157), Expect = 3e-10
Identities = 78/262 (29%), Positives = 100/262 (38%), Gaps = 52/262 (19%)
Query: 125 PGQPPPHSTWNCHSLSLYSATKGSPHPG-VGVPTYYNHPEALKREKAGGPQLDRYVRPMM 183
PG PP S + HS S PHP +G P + + P + GGP P M
Sbjct: 104 PGMGPPQSPMDQHSQGYMS-----PHPSPLGAPEHVSSPMS-----GGGP-----TPPQM 148
Query: 184 P--QKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFR-----QGPPP 236
P Q L G PQA +P P P QL HQ+ Q+ +G P
Sbjct: 149 PPSQPGALIPGDPQA-------MSQPNRGPSPFSPVQL---HQLRAQILAYKMLARGQPL 198
Query: 237 PNPVAAF-----------PPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPS--- 282
P + Q+QQQQQQ QQQQQQQQ PQ + QQP+
Sbjct: 199 PETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
Query: 283 -QQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPA--LPQVQ 339
+P G + +GP L + P P P A+ S PQPA P
Sbjct: 259 YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPV 318
Query: 340 IPFPRRSRRLSKEGILPPSALD 361
+ ++ R+S I P LD
Sbjct: 319 LQLQQKQSRISP--IQKPQGLD 338
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 65.1 bits (157), Expect = 3e-10
Identities = 78/262 (29%), Positives = 100/262 (38%), Gaps = 52/262 (19%)
Query: 125 PGQPPPHSTWNCHSLSLYSATKGSPHPG-VGVPTYYNHPEALKREKAGGPQLDRYVRPMM 183
PG PP S + HS S PHP +G P + + P + GGP P M
Sbjct: 104 PGMGPPQSPMDQHSQGYMS-----PHPSPLGAPEHVSSPMS-----GGGP-----TPPQM 148
Query: 184 P--QKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFR-----QGPPP 236
P Q L G PQA +P P P QL HQ+ Q+ +G P
Sbjct: 149 PPSQPGALIPGDPQA-------MSQPNRGPSPFSPVQL---HQLRAQILAYKMLARGQPL 198
Query: 237 PNPVAAF-----------PPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPS--- 282
P + Q+QQQQQQ QQQQQQQQ PQ + QQP+
Sbjct: 199 PETLQLAVQGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVN 258
Query: 283 -QQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPA--LPQVQ 339
+P G + +GP L + P P P A+ S PQPA P
Sbjct: 259 YNRPSGPGPELSGPSTPQKLPVPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPV 318
Query: 340 IPFPRRSRRLSKEGILPPSALD 361
+ ++ R+S I P LD
Sbjct: 319 LQLQQKQSRISP--IQKPQGLD 338
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 62.0 bits (149), Expect = 3e-09
Identities = 65/240 (27%), Positives = 92/240 (38%), Gaps = 13/240 (5%)
Query: 104 PGRGPERGGGGGVSDSSWQQQ---PGQPPPHSTWNC-HSLSLYSATKGSPHPGVGVPTYY 159
P RGP + GG S + Q GQPPP ++ HS+++ S +
Sbjct: 102 PPRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQ 161
Query: 160 NHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQL 219
+ + ++ L + + Q+ Q + Q + ++ Q Q +
Sbjct: 162 QQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLI 221
Query: 220 AFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQ 279
HQ N+Q +Q +A Q QQQQQQ QQQQQQQQA Q P+ + PQ
Sbjct: 222 KLHHQ-NQQQIQQQQQQLQRIAQLQLQ-QQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQ 279
Query: 280 QPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQ 339
P Q LQ H HH P P P P + L S QP + Q Q
Sbjct: 280 PPPSQALPQQLQQ-----MHHTQHHQ--PPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQ 332
Score = 40.8 bits (94), Expect = 0.007
Identities = 83/349 (23%), Positives = 121/349 (34%), Gaps = 51/349 (14%)
Query: 185 QKVQLEVGRPQAPLNS--FHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAA 242
Q+ Q + + Q P+ + PP+Q+LP Q Q+ H + Q PPP P
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMH--HTQHHQ------PPPQPQQ- 307
Query: 243 FPPQKQQQQQQ-PQQQQQQ----QQAALPQMPLFE----NFYSMP---QQPSQQPQDFGL 290
PP Q Q Q P Q Q Q Q ALP L+ F P QQP QPQ
Sbjct: 308 -PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQ 366
Query: 291 QPAGPLGQSHLAHHSMAPYPFPPNPDMNPELR-------KALLQDSAPQPALPQVQIPFP 343
Q A Q A P M E +A + A+P IP
Sbjct: 367 QTAVQTAQ--------AAQMVAPGVQMITEALAQGGMHIRARFPPTTAVSAIPSSSIPLG 418
Query: 344 RRSRRLSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGS-LGQPHPEALGFPL 402
R+ + LP + PGQ+ + P P PG QP+ P
Sbjct: 419 RQPMAQVSQSSLPML----SSPSPGQQVQTPQSMPPPPQPSPQPGQPSSQPNSNVSSGPA 474
Query: 403 ELRESQLLPDGERLAPNGREREAPAMG-SEEGMRAVSTGDCGQVLRGGVIQSTRRRRRAS 461
S LP +P+ + ++P + + S G + + S +A
Sbjct: 475 P-SPSSFLP-----SPSPQPSQSPVTARTPQNFSVPSPGPLNTPVNPSSVMSPAGSSQAE 528
Query: 462 QEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVLASTTKCGVEFSEPS 510
++ L L Q + + L+ + E RK L+ ++PS
Sbjct: 529 EQQYLDKLKQLSKYIEPLRRMINKIDKNEDRKKDLSKMKSLLDILTDPS 577
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 62.0 bits (149), Expect = 3e-09
Identities = 65/240 (27%), Positives = 92/240 (38%), Gaps = 13/240 (5%)
Query: 104 PGRGPERGGGGGVSDSSWQQQ---PGQPPPHSTWNC-HSLSLYSATKGSPHPGVGVPTYY 159
P RGP + GG S + Q GQPPP ++ HS+++ S +
Sbjct: 102 PPRGPGQSLGGMGSLGAMGQPMSLSGQPPPGTSGMAPHSMAVVSTATPQTQLQLQQVALQ 161
Query: 160 NHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQL 219
+ + ++ L + + Q+ Q + Q + ++ Q Q +
Sbjct: 162 QQQQQQQFQQQQQAALQQQQQQQQQQQFQAQQSAMQQQFQAVVQQQQQLQQQQQQQQHLI 221
Query: 220 AFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQ 279
HQ N+Q +Q +A Q QQQQQQ QQQQQQQQA Q P+ + PQ
Sbjct: 222 KLHHQ-NQQQIQQQQQQLQRIAQLQLQ-QQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQ 279
Query: 280 QPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQ 339
P Q LQ H HH P P P P + L S QP + Q Q
Sbjct: 280 PPPSQALPQQLQQ-----MHHTQHHQ--PPPQPQQPPVAQNQPSQLPPQSQTQPLVSQAQ 332
Score = 42.4 bits (98), Expect = 0.002
Identities = 64/238 (26%), Positives = 88/238 (36%), Gaps = 41/238 (17%)
Query: 185 QKVQLEVGRPQAPLNS--FHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAA 242
Q+ Q + + Q P+ + PP+Q+LP Q Q+ H + Q PPP P
Sbjct: 257 QQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMH--HTQHHQ------PPPQPQQ- 307
Query: 243 FPPQKQQQQQQ-PQQQQQQ----QQAALPQMPLFE----NFYSMP---QQPSQQPQDFGL 290
PP Q Q Q P Q Q Q Q ALP L+ F P QQP QPQ
Sbjct: 308 -PPVAQNQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQ 366
Query: 291 QPAGPLGQSHL-----AHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRR 345
Q A Q+ S + P +P +++ PQP+ PQ P +
Sbjct: 367 QTAVQTAQAAQMVAPGVQVSQSSLPMLSSPSPGQQVQTPQSMPPPPQPS-PQPGQPSSQP 425
Query: 346 SRRLSKEGILPPSA-LDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPL 402
+ +S PS+ L QP Q P+ P + P P L P+
Sbjct: 426 NSNVSSGPAPSPSSFLPSPSPQPSQS----------PVTARTPQNFSVPSPGPLNTPV 473
Score = 31.2 bits (69), Expect = 5.3
Identities = 64/288 (22%), Positives = 108/288 (37%), Gaps = 43/288 (14%)
Query: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQ----PPQQSI--RVKEEQYLGHEGP-- 52
+ LQ Q + Q ++++ + P Q PP+Q PP Q++ ++++ + H P
Sbjct: 244 LQLQQQQQQQQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPP 303
Query: 53 ---GGAVSTSQPVELPPPSSLALLNSVVYGPERTSAAMLSQQ--VASVKWPNSVMAPGRG 107
V+ +QP +LPP S +V + ML Q + V+ P V P
Sbjct: 304 QPQQPPVAQNQPSQLPPQSQ---TQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQ 360
Query: 108 P---ERGGGGGVSDSSWQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEA 164
P ++ + ++ PG S SL + S SP PG V T P++
Sbjct: 361 PQVQQQQTAVQTAQAAQMVAPGVQVSQS-----SLPMLS----SPSPGQQVQT----PQS 407
Query: 165 LKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQ 224
+ PQ +P + G +P + + P+QS +
Sbjct: 408 MPPPPQPSPQPG---QPSSQPNSNVSSGPAPSPSSFLPSPSPQPSQS------PVTARTP 458
Query: 225 VNRQVFRQGP--PPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPL 270
N V GP P NP + P Q ++ Q + +Q + PL
Sbjct: 459 QNFSVPSPGPLNTPVNPSSVMSPAGSSQAEEQQYLDKLKQLSKYIEPL 506
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 58.5 bits (140), Expect = 3e-08
Identities = 74/258 (28%), Positives = 93/258 (36%), Gaps = 64/258 (24%)
Query: 73 LNSVVYGPERTSAAMLSQQVASVKWPN--SVMAPGRGPERGGGG---GVSDSSWQQQPGQ 127
+ S P + A S++ A+ +WP S+ P R RGGGG G S+ PG
Sbjct: 1 MRSAAAAPRSPAVATESRRFAAARWPGWRSLQRPARRSGRGGGGAAPGPYPSAAPPPPGP 60
Query: 128 PPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKV 187
PP S + S S GS G G P + + GGP RP + +
Sbjct: 61 GPPPSRQS--SPPSASDCFGSNGNGGGA----FRPGSRRLLGLGGPP-----RPFVV--L 107
Query: 188 QLEVGRPQAP------LNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVA 241
L + P AP + A PP + L R P P P
Sbjct: 108 LLPLASPGAPPAAPTRASPLGARASPPRSGVSLA---------------RPAPGCPRPAC 152
Query: 242 ---------AFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQP 292
+ PQ+QQQQQQ QQQQQQQQ QQ QQP
Sbjct: 153 EPVYGPLTMSLKPQQQQQQQQQQQQQQQQQ----------------QQQQQQPPPAAANV 196
Query: 293 AGPLGQSHLAHHSMAPYP 310
P G LA + AP P
Sbjct: 197 RKPGGSGLLASPAAAPSP 214
Score = 32.0 bits (71), Expect = 3.1
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Query: 1 MNLQAQPKAQNKRKRCLFGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQ 60
M+L+ Q + Q ++++ Q+ ++Q QPP + V++ PGG+ +
Sbjct: 161 MSLKPQQQQQQQQQQ-----QQQQQQQQQQQQQPPPAAANVRK--------PGGSGLLAS 207
Query: 61 PVELPPPSSLALLNSVVYGPERTSAA 86
P P PSS ++ +S P AA
Sbjct: 208 PAAAPSPSSSSVSSSSATAPSSVVAA 233
Score = 31.6 bits (70), Expect = 4.1
Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 20/153 (13%)
Query: 555 EQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTK 614
E++ E K R+ST P A++ N + +P PRP+ P+
Sbjct: 895 EKDDKEEKKDAAEQVRKSTLNPN------AKEFNPRSFSQPKPSTTPTSPRPQAQPSPSM 948
Query: 615 AGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYFNAI 674
G PVY+ + ++ PV ++ P + P TP P+ N
Sbjct: 949 VGHQQPTPVYTQPVCFAPNMMYPVPVS--PGVQPLYPIPMTPMPV------------NQA 994
Query: 675 ISTSTIPAPPPITPKSAHRTLLRTNSAEVTPPV 707
+ +P P H++ + ++ PP+
Sbjct: 995 KTYRAVPNMPQQRQDQHHQSAMMHPASAAGPPI 1027
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 58.2 bits (139), Expect = 4e-08
Identities = 42/175 (24%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 833 WKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVD 892
W E+++F + K+F L+ ++ K+V CV +YY KK +G
Sbjct: 440 WTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNENYKALVRRNYGKRR 499
Query: 893 TSDEKSAQ--EEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQ 950
+++ A+ +E +V+ K K + E EE + K + KE KE ++ +
Sbjct: 500 GRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAE 559
Query: 951 EKEEQEEGRERSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQASEKP 1005
E EE+E+ R R+ A + + + S ++E+ A +A A+E+P
Sbjct: 560 ETEEREQATPRGRKTANSQGRRKGRITRS-------MTNEAAAASAAAAAATEEP 607
Score = 46.6 bits (109), Expect = 1e-04
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 27/182 (14%)
Query: 814 PLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYT 873
PL P P++T S +W E ++ KG+ + +++ + K++ TK+ AQC FY+
Sbjct: 610 PLPPPPEPISTEPVETS-RWTEEEMEVAKKGLVEHGRNWAAIAKMVGTKSEAQCKNFYFN 668
Query: 874 YKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKR 933
YK++ ++D ++ Q KTS+K PR + S +
Sbjct: 669 YKRR-----------HNLDNLLQQHKQ-------KTSRK-PREERDVSQCESVASTVSAQ 709
Query: 934 EVKEPRKEGEEEVPEIQE-------KEEQEEGRERSRRAAAVKATQTLQANESASDILIL 986
E ++ EEE PE E ++ E R AV+ T + S S L +
Sbjct: 710 EDEDIEASNEEENPEDSEVEAVKPSEDSPENATSRGNTEPAVELEPTTETAPSTSPSLAV 769
Query: 987 RS 988
S
Sbjct: 770 PS 771
Score = 32.7 bits (73), Expect = 1.8
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 927 ERLE--PKREVKEP--RKEGEEEVPEIQEKEEQEEGRER-SRRAAAVKATQTLQANESAS 981
+R+E P+R+ KE R+ E++ PEI+++ EQ+E +R +R A + AT +E +
Sbjct: 323 DRIENNPRRKAKESKTREYYEKQFPEIRKQREQQERFQRVGQRGAGLSATIARSEHEISE 382
Query: 982 DILILRSHESN 992
I L E+N
Sbjct: 383 IIDGLSEQENN 393
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 58.2 bits (139), Expect = 4e-08
Identities = 89/354 (25%), Positives = 116/354 (32%), Gaps = 113/354 (31%)
Query: 19 GGQEPAPKEQP-----------PPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVE---- 63
GG++ P P PP +PP + G G S P
Sbjct: 249 GGKQHPPPTTPISVSSSGASGAPPTKPPTTPV-----------GGGNLPSAPPPANFPHV 297
Query: 64 ---LPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
LPPP +L LN+ P A L + S A G+G GG+
Sbjct: 298 TPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPH------AMGQGM-----GGLPPGP 346
Query: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
+ P PHS L A+ +P P + P Y + + +
Sbjct: 347 EKGPTLAPSPHS--------LPPASSSAPAPPMRFP-YSSSSSSSAAASSSSSSSSSSAS 397
Query: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
P + P S + +PP + P P Q V+ QGPPPP P
Sbjct: 398 PFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQA---------VWSQGPPPPPPY 448
Query: 241 AA-----------FPP--------------------QKQQQQQQPQQQQQQQQAALPQMP 269
FPP Q+QQQQQQ QQQQQQQQ
Sbjct: 449 GRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQ------ 502
Query: 270 LFENFYSMPQQPSQQPQDFGLQPAGPL--GQSHLAH-HSMAP-----YPFPPNP 315
+ S P P P PL G SH AH ++M+P P+PP P
Sbjct: 503 --HHGNSGPPPPGAFPH--------PLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546
Score = 34.7 bits (78), Expect = 0.48
Identities = 69/304 (22%), Positives = 117/304 (38%), Gaps = 58/304 (19%)
Query: 419 NGREREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELAS 478
+GR++EAP G E +R+ G+ GGV S+ + E + T + VE AS
Sbjct: 14 SGRKKEAP--GPREELRSR-----GRASPGGVSTSSSDGKA---EKSRQTAKKARVEEAS 63
Query: 479 LQNAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDP 538
SEE +S T +E L ++ D S+ R+++
Sbjct: 64 TPKVNKQGRSEEISESESEETNAPKKTKTEQELPRPQSPSDLD--------SLDGRSLND 115
Query: 539 TEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVR 598
++ +D+D + +P+ + P + S+ +Q A + PS +
Sbjct: 116 DGSSDPRDIDQDNRST--SPSIYSPGSVENDSDSS---SGLSQGPARPYHPPPLFPPSPQ 170
Query: 599 KPKQRPR-PEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPP 657
P PR PE P + ++TP H +P+ + P+ R F+ PP PP
Sbjct: 171 PPDSTPRQPEASFEP-----------HPSVTPTGYH--APM---EPPTSRMFQAPPGAPP 214
Query: 658 PILSPVREGSGLYFNAIISTSTIPAPPPITPK--SAHRTLLRTNSAEVTPPVLSVMGEAT 715
P G+G + + PP+ PK A ++ N + PP T
Sbjct: 215 PHPQLYPGGTG----------GVLSGPPMGPKGGGAASSVGGPNGGKQHPP------PTT 258
Query: 716 PVSI 719
P+S+
Sbjct: 259 PISV 262
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 58.2 bits (139), Expect = 4e-08
Identities = 89/354 (25%), Positives = 116/354 (32%), Gaps = 113/354 (31%)
Query: 19 GGQEPAPKEQP-----------PPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVE---- 63
GG++ P P PP +PP + G G S P
Sbjct: 249 GGKQHPPPTTPISVSSSGASGAPPTKPPTTPV-----------GGGNLPSAPPPANFPHV 297
Query: 64 ---LPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSS 120
LPPP +L LN+ P A L + S A G+G GG+
Sbjct: 298 TPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPH------AMGQGM-----GGLPPGP 346
Query: 121 WQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVR 180
+ P PHS L A+ +P P + P Y + + +
Sbjct: 347 EKGPTLAPSPHS--------LPPASSSAPAPPMRFP-YSSSSSSSAAASSSSSSSSSSAS 397
Query: 181 PMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPV 240
P + P S + +PP + P P Q V+ QGPPPP P
Sbjct: 398 PFPASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQA---------VWSQGPPPPPPY 448
Query: 241 AA-----------FPP--------------------QKQQQQQQPQQQQQQQQAALPQMP 269
FPP Q+QQQQQQ QQQQQQQQ
Sbjct: 449 GRLLANSNAHPGPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQQQQQ------ 502
Query: 270 LFENFYSMPQQPSQQPQDFGLQPAGPL--GQSHLAH-HSMAP-----YPFPPNP 315
+ S P P P PL G SH AH ++M+P P+PP P
Sbjct: 503 --HHGNSGPPPPGAFPH--------PLEGGSSHHAHPYAMSPSLGSLRPYPPGP 546
Score = 34.7 bits (78), Expect = 0.48
Identities = 69/304 (22%), Positives = 117/304 (38%), Gaps = 58/304 (19%)
Query: 419 NGREREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAVELAS 478
+GR++EAP G E +R+ G+ GGV S+ + E + T + VE AS
Sbjct: 14 SGRKKEAP--GPREELRSR-----GRASPGGVSTSSSDGKA---EKSRQTAKKARVEEAS 63
Query: 479 LQNAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVPLIIPVSVPVRTVDP 538
SEE +S T +E L ++ D S+ R+++
Sbjct: 64 TPKVNKQGRSEEISESESEETNAPKKTKTEQELPRPQSPSDLD--------SLDGRSLND 115
Query: 539 TEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVR 598
++ +D+D + +P+ + P + S+ +Q A + PS +
Sbjct: 116 DGSSDPRDIDQDNRST--SPSIYSPGSVENDSDSS---SGLSQGPARPYHPPPLFPPSPQ 170
Query: 599 KPKQRPR-PEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPP 657
P PR PE P + ++TP H +P+ + P+ R F+ PP PP
Sbjct: 171 PPDSTPRQPEASFEP-----------HPSVTPTGYH--APM---EPPTSRMFQAPPGAPP 214
Query: 658 PILSPVREGSGLYFNAIISTSTIPAPPPITPK--SAHRTLLRTNSAEVTPPVLSVMGEAT 715
P G+G + + PP+ PK A ++ N + PP T
Sbjct: 215 PHPQLYPGGTG----------GVLSGPPMGPKGGGAASSVGGPNGGKQHPP------PTT 258
Query: 716 PVSI 719
P+S+
Sbjct: 259 PISV 262
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 57.4 bits (137), Expect = 7e-08
Identities = 90/346 (26%), Positives = 112/346 (32%), Gaps = 93/346 (26%)
Query: 21 QEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVYGP 80
Q P P +QPPP PPQQ QP PPP S+ P
Sbjct: 756 QPPPPPQQPPPPPPPQQQ--------------------QQPPPPPPPPSM---------P 786
Query: 81 ERTSAAMLSQ---------QVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQP------ 125
++ + AM S V + P SV P G QP
Sbjct: 787 QQAAPAMKSSPPPFIATQVPVLEPQLPGSVFDP-------IGHFTQPILHLPQPELPPHL 839
Query: 126 GQPPPHST---WNCHSL----SLYSATKGSP----HPGVGVPTYYNHPEALKREKAGGPQ 174
QPP HST N H++ +L++A P + +P P A+ P
Sbjct: 840 PQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKPARPPAVSPALTQTPL 899
Query: 175 LDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGP 234
L + PQ + + P PL S P L +V Q P
Sbjct: 900 LPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPPTPLLPSVKVQSQ-----P 954
Query: 235 PPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGL---Q 291
PPP P P +QQ QQQP Q PQ P + P+ QP F Q
Sbjct: 955 PPPLPPPPHPSVQQQLQQQPPPPPPPQ----PQPPPQQQHQPPPRPVHLQPMQFSTHIQQ 1010
Query: 292 PAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQ 337
P P GQ PP+P Q PQPA PQ
Sbjct: 1011 PPPPQGQQ------------PPHPPPGQ-------QPPPPQPAKPQ 1037
Score = 54.7 bits (130), Expect = 4e-07
Identities = 62/215 (28%), Positives = 82/215 (38%), Gaps = 20/215 (9%)
Query: 224 QVNRQVFRQGPPPPN-PVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPS 282
Q V +Q PPPP P PPQ+QQQ P Q A P M + Q P
Sbjct: 748 QAPAPVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQVPV 807
Query: 283 QQPQDFG--LQPAGPLGQS--HLAHHSMAPY-PFPPNPDMNPELRK-ALLQDSAPQPALP 336
+PQ G P G Q HL + P+ P PP P L + A++ A ALP
Sbjct: 808 LEPQLPGSVFDPIGHFTQPILHLPQPELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALP 867
Query: 337 QVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPE 396
Q + SR ++ LPP P T L P+ QPP L P
Sbjct: 868 Q------QPSRPSNRAAALPPKPARPPAVSPA--LTQTPLLPQPPMAQPPQVLLEDEEPP 919
Query: 397 A-----LGFPLELRESQLLPDGERLAPNGREREAP 426
A + L L++ Q + L P+ + + P
Sbjct: 920 APPLTSMQMQLYLQQLQKVQPPTPLLPSVKVQSQP 954
Score = 52.8 bits (125), Expect = 2e-06
Identities = 80/287 (27%), Positives = 109/287 (37%), Gaps = 38/287 (13%)
Query: 122 QQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRP 181
QQQP PPP + + A K SP P + P+ + + + +P
Sbjct: 773 QQQPPPPPPPPSMPQQAAP---AMKSSPPPFIATQVPVLEPQL---PGSVFDPIGHFTQP 826
Query: 182 MM--PQKVQLEVGRPQAPLNSF------HAAKKPP--NQSLPLQPFQLAFGHQVNRQVFR 231
++ PQ +L PQ P +S HA PP + +LP QP +R R
Sbjct: 827 ILHLPQP-ELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQP---------SRPSNR 876
Query: 232 QGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDF--- 288
PP P A PP Q Q A PQ+ L + P S Q Q +
Sbjct: 877 AAALPPKP--ARPPAVSPALTQTPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQ 934
Query: 289 --GLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRS 346
+QP PL S + S P P PP P +P +++ L Q P P PQ Q P ++
Sbjct: 935 LQKVQPPTPLLPS-VKVQSQPPPPLPPPP--HPSVQQQLQQQPPPPPP-PQPQPPPQQQH 990
Query: 347 RRLSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQP 393
+ + L P QP G H P QQPPP +P
Sbjct: 991 QPPPRPVHLQPMQFSTHIQQP-PPPQGQQPPHPPPGQQPPPPQPAKP 1036
Score = 37.0 bits (84), Expect = 0.097
Identities = 58/245 (23%), Positives = 84/245 (34%), Gaps = 49/245 (20%)
Query: 23 PAPKEQPPPLQ---PPQQSIRVKEEQYLGH-----EGPGGAVSTSQPVELPPPSSLALLN 74
P P+ QPPP Q PP + + ++ Q+ H G P + PPP A
Sbjct: 978 PPPQPQPPPQQQHQPPPRPVHLQPMQFSTHIQQPPPPQGQQPPHPPPGQQPPPPQPAKPQ 1037
Query: 75 SVV---YGPERTSAAMLSQ-QVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPP 130
V+ + P + S + P + +P S +Q Q PP
Sbjct: 1038 QVIQHHHSPRHHKSDPYSTGHLREAPSPLMIHSPQM------------SQFQSLTHQSPP 1085
Query: 131 HSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLE 190
L +A+ P P V V H ++ E P L R P P+ ++
Sbjct: 1086 QQNVQPKKQELRAASVVQPQPLVVVKEEKIHSPIIRSEPFS-PSL-RPEPPKHPESIKAP 1143
Query: 191 VGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQ 250
V PQ P KP + V R V R PP N P K +Q
Sbjct: 1144 VHLPQRP------EMKPVD---------------VGRPVIR--PPEQNAPPPGAPDKDKQ 1180
Query: 251 QQQPQ 255
+Q+P+
Sbjct: 1181 KQEPK 1185
Score = 37.0 bits (84), Expect = 0.097
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 6/41 (14%)
Query: 246 QKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQ 286
++QQQQ+Q QQQQQQQQAA + PQ S QPQ
Sbjct: 1284 EQQQQQRQEQQQQQQQQAAAVAAA------ATPQAQSSQPQ 1318
Score = 36.6 bits (83), Expect = 0.13
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 896 EKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQ 955
EK+ + + E K ++ + + RE E+ LE R E + +E+ Q+++ Q
Sbjct: 1238 EKALKAQAEHAEKEKERLRQERMRSRED--EDALEQARRAHEEARRRQEQ----QQQQRQ 1291
Query: 956 EEGRERSRRAAAVKATQTLQANESASDILILRSHE 990
E+ +++ ++AAAV A T QA S ++ + E
Sbjct: 1292 EQQQQQQQQAAAVAAAATPQAQSSQPQSMLDQQRE 1326
>gi|7661892 REST corepressor 1 [Homo sapiens]
Length = 482
Score = 57.0 bits (136), Expect = 9e-08
Identities = 55/245 (22%), Positives = 111/245 (45%), Gaps = 41/245 (16%)
Query: 723 INVGSRFQAEIPLMRDRALAAADPHKADL---VWQPWEDLESSREKQRQVEDLLTAACSS 779
+ VG ++QA +P LA + +L VW P ++L ++ +++ + A
Sbjct: 102 MRVGPQYQAVVPDFDPAKLARRSQERDNLGMLVWSPNQNLSEAK-----LDEYIAIAKEK 156
Query: 780 IFPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERK 839
G N E AL L + +I ++L L P+ P D+W + ++
Sbjct: 157 ----HGYNMEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKV 198
Query: 840 LFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSA 899
LF + + + K F +Q+++ K++A V+FYY++KK R T D +K
Sbjct: 199 LFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKT----RTKTSVM-DRHARKQKRE 253
Query: 900 QEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQEKEEQEEGR 959
+EE E +++ + + + ++ E K+EV E VP++++++ + +
Sbjct: 254 REESEDELEEANGNNPIDI-----EVDQNKESKKEVPP-----TETVPQVKKEKHSTQAK 303
Query: 960 ERSRR 964
R++R
Sbjct: 304 NRAKR 308
Score = 32.0 bits (71), Expect = 3.1
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 832 QWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDV 891
+W E+ L + I Y +DF + +I K+V Q F+ Y+++ I + L +
Sbjct: 382 RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNI--DEVLQEWEA 439
Query: 892 DTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESP 924
+ E++ + +K+ ++P E+P
Sbjct: 440 EHGKEETNGPSNQKPVKSPDNSIKMPEEEDEAP 472
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 56.6 bits (135), Expect = 1e-07
Identities = 86/335 (25%), Positives = 115/335 (34%), Gaps = 30/335 (8%)
Query: 21 QEPAPKEQPPPLQPPQQSIR-VKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVYG 79
Q P P+ QPPP PPQQ + + Q G + P G + QP P P + V
Sbjct: 2505 QPPPPQPQPPP--PPQQPPPPLPQPQAAGSQPPAGPPAV-QPQPQPQPQTQP---QPVQA 2558
Query: 80 PERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHSL 139
P + A+ + A+V ++ G G + G P L
Sbjct: 2559 PAKAQPAITTGGSAAVL-AGTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRL 2617
Query: 140 SLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLN 199
+ A PG P H + R G P P V + + +
Sbjct: 2618 ASPVAPGALTTPGGSAPAQVVHTQPPPRA-VGSPAT------ATPDLVSMATTQGVRAVT 2670
Query: 200 SFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFP--------PQKQQQQ 251
S A+ P+Q + QV++ Q P A F Q+QQQQ
Sbjct: 2671 SVTASAVVTTNLTPVQTPARSLVPQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQ 2730
Query: 252 QQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSHLAHH-----SM 306
QQ QQQQQQQQ Q + +PQ Q ++ G L HL M
Sbjct: 2731 QQQQQQQQQQQQQQQQQTTTTSQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQM 2790
Query: 307 APYPFPPNPDMNPELRKALLQDSAPQPALPQVQIP 341
P P PP P A +Q QP PQ Q P
Sbjct: 2791 PPQPPPPQAQSAPPQPTAQVQVQTSQP--PQQQSP 2823
Score = 35.0 bits (79), Expect = 0.37
Identities = 35/121 (28%), Positives = 43/121 (35%), Gaps = 13/121 (10%)
Query: 232 QGPPPPNPVAAFPPQKQQQQQQ-------PQQQQQQQQAALPQMPLFENFYSMPQQPSQQ 284
QG PP P AA ++Q QQQ P Q LPQ+P +P
Sbjct: 513 QGGMPPTPQAAQLAGQRQSQQQYDPSTGPPVQNAASLHTPLPQLPGRLPPAGVPTAALSS 572
Query: 285 PQDFGLQPAGPLGQSHL-----AHHSMAPYPFPPNPDMN-PELRKALLQDSAPQPALPQV 338
F QP Q+ L P P PP+ + P + A L P P QV
Sbjct: 573 ALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQLPIPPSQPAQLALHVPTPGKVQV 632
Query: 339 Q 339
Q
Sbjct: 633 Q 633
Score = 31.2 bits (69), Expect = 5.3
Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 15/108 (13%)
Query: 234 PPPPNPVAAFPPQKQQQQQQP-QQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQP 292
P PP VA+ ++ ++++ QQ+ QQ A+ Q P P QP QP
Sbjct: 2471 PLPPIQVASLRAERIAKEKKALADQQKAQQPAVAQ----------PPPPQPQPPPPPQQP 2520
Query: 293 AGPLGQSHLA--HHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQV 338
PL Q A P P P P+ + +Q AP A P +
Sbjct: 2521 PPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQPVQ--APAKAQPAI 2566
Score = 30.8 bits (68), Expect = 7.0
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 237 PNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYS----MPQQPSQQPQDFGLQP 292
P PP Q Q Q+Q QQQ P+ +N S +PQ P + P P
Sbjct: 510 PTAQGGMPPTPQAAQLAGQRQSQQQYDPSTGPPV-QNAASLHTPLPQLPGRLP------P 562
Query: 293 AGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFP 343
AG + + A P ++ Q + P PA P Q+P P
Sbjct: 563 AGVPTAALSSALQFAQQPQVVEAQTQLQIPVKTQQPNVPIPAPPSSQLPIP 613
>gi|94721313 mesoderm induction early response 1, family member 3
[Homo sapiens]
Length = 549
Score = 55.5 bits (132), Expect = 3e-07
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 20/170 (11%)
Query: 715 TPVSIEPRINVGSRFQAEIP--LMRDRALAAADPHKADLVWQPWEDLESSREKQRQVEDL 772
+P + I +G ++QAEIP L ++ L+W P LES + K+ VE
Sbjct: 168 SPEDLRKEIMIGLQYQAEIPPYLGEYDGNEKVYENEDQLLWCPDVVLES-KVKEYLVETS 226
Query: 773 LTAACSSIFP--GAGTN---QELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHY 827
L I AGT+ E AL+ L + +I E + +
Sbjct: 227 LRTGSEKIMDRISAGTHTRDNEQALYELLKCNHNIKEAIERYCCNGKASQ---------- 276
Query: 828 TGSDQWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
G W E + F + ++ KDF L+QK ++T+TVA+CV FYY +KK
Sbjct: 277 -GMTAWTEEECRSFEHALMLFGKDFHLIQKNKVRTRTVAECVAFYYMWKK 325
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 55.5 bits (132), Expect = 3e-07
Identities = 90/335 (26%), Positives = 110/335 (32%), Gaps = 54/335 (16%)
Query: 117 SDSSWQQQ--PGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQ 174
SDSS QQQ QPP + + SA G+P +PT P A G P
Sbjct: 171 SDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQ----LPTPGPTPSATAVPPQGSPT 226
Query: 175 LDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGP 234
+ P PQ P AP+ H + P L P + H P
Sbjct: 227 ASQ--APNQPQA-------PTAPVPHTHIQQAPA-----LHPQRPPSPHP---------P 263
Query: 235 PPPNPVAAFPPQKQQ--QQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQP 292
P P+P P Q P Q P P + Q P PQ FGL P
Sbjct: 264 PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGP-PQPFGLPP 322
Query: 293 AGPLGQSHLAHHSMAPYPF----------------PPNPDMNPELRKALLQDSAPQPALP 336
GQ+ L A YP PP P A + P P P
Sbjct: 323 QASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLA-MPHIKPPPTTP 381
Query: 337 QVQIPFPRRSRRLSK-EGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSL---GQ 392
Q+P P+ + G P S P + +L HH P PPP L Q
Sbjct: 382 IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 441
Query: 393 PHPEALGFPLELRESQLLPDGERL-APNGREREAP 426
P P + P L +SQ LP P G + AP
Sbjct: 442 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAP 476
Score = 41.2 bits (95), Expect = 0.005
Identities = 87/396 (21%), Positives = 112/396 (28%), Gaps = 76/396 (19%)
Query: 21 QEPA--PKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVY 78
Q PA P+ P P PP S + G G A S +QP
Sbjct: 248 QAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQP----------------- 290
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHS 138
G+GP G + Q PG P P
Sbjct: 291 -----------------------PLHGQGPP--GPHSLQAGPLLQHPGPPQPFGL----- 320
Query: 139 LSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPL 198
A++G G Y H QL + Q+ E P APL
Sbjct: 321 --PPQASQGQAPLGTSPAAAYPHTSL---------QLPASQSALQSQQPPREQPLPPAPL 369
Query: 199 NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQ 258
H K PP +P P A H + GP P + A PP +
Sbjct: 370 AMPH-IKPPPTTPIPQLPAPQAHKHPPH----LSGPSPFSMNANLPPPPALKPLSSLSTH 424
Query: 259 QQQQAALPQMPLFENFYSMPQQPSQQP---QDFGLQPAGPLGQSHLAHHSMAPYP----F 311
A P + L +P P+Q P Q L P P H +AP P
Sbjct: 425 HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPP-PASHPPTGLHQVAPQPPFAQH 483
Query: 312 PPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEA 371
P P P + ++ PA P P S I S+ Q +EA
Sbjct: 484 PFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEA 543
Query: 372 TGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRES 407
+ P PPP P P + P +S
Sbjct: 544 LDDA---EEPESPPPPPRSPSPEPTVVDTPSHASQS 576
Score = 35.0 bits (79), Expect = 0.37
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 26/168 (15%)
Query: 556 QNPAEHKPSVIVTRRRSTRIP-GTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTK 614
Q+P +P + + + P GT A +++L S + +Q PR +PL
Sbjct: 310 QHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPL 369
Query: 615 AGTFIAPPVYSNITPY---QSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYF 671
A I PP + I Q+H P P + LP PPP L P+
Sbjct: 370 AMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLP---PPPALKPL-------- 418
Query: 672 NAIISTSTIPA--PPPI--------TPKSAHRTLLRTNSAEVTPPVLS 709
+ +ST P+ PPP+ P S + T S + PP S
Sbjct: 419 -SSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPAS 465
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 55.5 bits (132), Expect = 3e-07
Identities = 90/335 (26%), Positives = 110/335 (32%), Gaps = 54/335 (16%)
Query: 117 SDSSWQQQ--PGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQ 174
SDSS QQQ QPP + + SA G+P +PT P A G P
Sbjct: 725 SDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQ----LPTPGPTPSATAVPPQGSPT 780
Query: 175 LDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGP 234
+ P PQ P AP+ H + P L P + H P
Sbjct: 781 ASQ--APNQPQA-------PTAPVPHTHIQQAPA-----LHPQRPPSPHP---------P 817
Query: 235 PPPNPVAAFPPQKQQ--QQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQP 292
P P+P P Q P Q P P + Q P PQ FGL P
Sbjct: 818 PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGP-PQPFGLPP 876
Query: 293 AGPLGQSHLAHHSMAPYPF----------------PPNPDMNPELRKALLQDSAPQPALP 336
GQ+ L A YP PP P A + P P P
Sbjct: 877 QASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLA-MPHIKPPPTTP 935
Query: 337 QVQIPFPRRSRRLSK-EGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSL---GQ 392
Q+P P+ + G P S P + +L HH P PPP L Q
Sbjct: 936 IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995
Query: 393 PHPEALGFPLELRESQLLPDGERL-APNGREREAP 426
P P + P L +SQ LP P G + AP
Sbjct: 996 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAP 1030
Score = 42.0 bits (97), Expect = 0.003
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 718 SIEPRINVGSRFQAEIPLMRDRALAAADP--HKADLVWQPWEDLESSREKQRQVEDLLTA 775
S + I VG QA++P ++ D +LVW P + R + A
Sbjct: 281 STQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAARSM--A 338
Query: 776 ACSSIFPGAGTNQEL-----------ALHCLHESRGDILETLNKLLLKKPLRPHNHPLAT 824
A + + G T AL+ LHES D + L +L+ KKP+
Sbjct: 339 AFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLV-KKPVPKLIEKC-- 395
Query: 825 YHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
W E K F KG+ Y K+FF ++K L+ K + + FYY +KK
Sbjct: 396 --------WTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 440
Score = 41.2 bits (95), Expect = 0.005
Identities = 87/396 (21%), Positives = 112/396 (28%), Gaps = 76/396 (19%)
Query: 21 QEPA--PKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVY 78
Q PA P+ P P PP S + G G A S +QP
Sbjct: 802 QAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQP----------------- 844
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHS 138
G+GP G + Q PG P P
Sbjct: 845 -----------------------PLHGQGPP--GPHSLQAGPLLQHPGPPQPFGL----- 874
Query: 139 LSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPL 198
A++G G Y H QL + Q+ E P APL
Sbjct: 875 --PPQASQGQAPLGTSPAAAYPHTSL---------QLPASQSALQSQQPPREQPLPPAPL 923
Query: 199 NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQ 258
H K PP +P P A H + GP P + A PP +
Sbjct: 924 AMPH-IKPPPTTPIPQLPAPQAHKHPPH----LSGPSPFSMNANLPPPPALKPLSSLSTH 978
Query: 259 QQQQAALPQMPLFENFYSMPQQPSQQP---QDFGLQPAGPLGQSHLAHHSMAPYP----F 311
A P + L +P P+Q P Q L P P H +AP P
Sbjct: 979 HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPP-PASHPPTGLHQVAPQPPFAQH 1037
Query: 312 PPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEA 371
P P P + ++ PA P P S I S+ Q +EA
Sbjct: 1038 PFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEA 1097
Query: 372 TGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRES 407
+ P PPP P P + P +S
Sbjct: 1098 LDDA---EEPESPPPPPRSPSPEPTVVDTPSHASQS 1130
Score = 35.0 bits (79), Expect = 0.37
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 26/168 (15%)
Query: 556 QNPAEHKPSVIVTRRRSTRIP-GTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTK 614
Q+P +P + + + P GT A +++L S + +Q PR +PL
Sbjct: 864 QHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPL 923
Query: 615 AGTFIAPPVYSNITPY---QSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYF 671
A I PP + I Q+H P P + LP PPP L P+
Sbjct: 924 AMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLP---PPPALKPL-------- 972
Query: 672 NAIISTSTIPA--PPPI--------TPKSAHRTLLRTNSAEVTPPVLS 709
+ +ST P+ PPP+ P S + T S + PP S
Sbjct: 973 -SSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPAS 1019
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 55.5 bits (132), Expect = 3e-07
Identities = 90/335 (26%), Positives = 110/335 (32%), Gaps = 54/335 (16%)
Query: 117 SDSSWQQQ--PGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQ 174
SDSS QQQ QPP + + SA G+P +PT P A G P
Sbjct: 725 SDSSAQQQMLQAQPPALQAPTGVTPAPSSAPPGTPQ----LPTPGPTPSATAVPPQGSPT 780
Query: 175 LDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGP 234
+ P PQ P AP+ H + P L P + H P
Sbjct: 781 ASQ--APNQPQA-------PTAPVPHTHIQQAPA-----LHPQRPPSPHP---------P 817
Query: 235 PPPNPVAAFPPQKQQ--QQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQP 292
P P+P P Q P Q P P + Q P PQ FGL P
Sbjct: 818 PHPSPHPPLQPLTGSAGQPSAPSHAQPPLHGQGPPGPHSLQAGPLLQHPGP-PQPFGLPP 876
Query: 293 AGPLGQSHLAHHSMAPYPF----------------PPNPDMNPELRKALLQDSAPQPALP 336
GQ+ L A YP PP P A + P P P
Sbjct: 877 QASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPLA-MPHIKPPPTTP 935
Query: 337 QVQIPFPRRSRRLSK-EGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSL---GQ 392
Q+P P+ + G P S P + +L HH P PPP L Q
Sbjct: 936 IPQLPAPQAHKHPPHLSGPSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQ 995
Query: 393 PHPEALGFPLELRESQLLPDGERL-APNGREREAP 426
P P + P L +SQ LP P G + AP
Sbjct: 996 PLPSSPAQPPGLTQSQNLPPPPASHPPTGLHQVAP 1030
Score = 42.0 bits (97), Expect = 0.003
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 27/173 (15%)
Query: 718 SIEPRINVGSRFQAEIPLMRDRALAAADP--HKADLVWQPWEDLESSREKQRQVEDLLTA 775
S + I VG QA++P ++ D +LVW P + R + A
Sbjct: 281 STQGEIRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMPGVNDCDLLMYLRAARSM--A 338
Query: 776 ACSSIFPGAGTNQEL-----------ALHCLHESRGDILETLNKLLLKKPLRPHNHPLAT 824
A + + G T AL+ LHES D + L +L+ KKP+
Sbjct: 339 AFAGMCDGGSTEDGCVAASRDDTTLNALNTLHESGYDAGKALQRLV-KKPVPKLIEKC-- 395
Query: 825 YHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQK-LIQTKTVAQCVEFYYTYKK 876
W E K F KG+ Y K+FF ++K L+ K + + FYY +KK
Sbjct: 396 --------WTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 440
Score = 41.2 bits (95), Expect = 0.005
Identities = 87/396 (21%), Positives = 112/396 (28%), Gaps = 76/396 (19%)
Query: 21 QEPA--PKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVY 78
Q PA P+ P P PP S + G G A S +QP
Sbjct: 802 QAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPSAPSHAQP----------------- 844
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHS 138
G+GP G + Q PG P P
Sbjct: 845 -----------------------PLHGQGPP--GPHSLQAGPLLQHPGPPQPFGL----- 874
Query: 139 LSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPL 198
A++G G Y H QL + Q+ E P APL
Sbjct: 875 --PPQASQGQAPLGTSPAAAYPHTSL---------QLPASQSALQSQQPPREQPLPPAPL 923
Query: 199 NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQ 258
H K PP +P P A H + GP P + A PP +
Sbjct: 924 AMPH-IKPPPTTPIPQLPAPQAHKHPPH----LSGPSPFSMNANLPPPPALKPLSSLSTH 978
Query: 259 QQQQAALPQMPLFENFYSMPQQPSQQP---QDFGLQPAGPLGQSHLAHHSMAPYP----F 311
A P + L +P P+Q P Q L P P H +AP P
Sbjct: 979 HPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPP-PASHPPTGLHQVAPQPPFAQH 1037
Query: 312 PPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEA 371
P P P + ++ PA P P S I S+ Q +EA
Sbjct: 1038 PFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAGGSSCPLPTVQIKEEA 1097
Query: 372 TGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRES 407
+ P PPP P P + P +S
Sbjct: 1098 LDDA---EEPESPPPPPRSPSPEPTVVDTPSHASQS 1130
Score = 35.0 bits (79), Expect = 0.37
Identities = 43/168 (25%), Positives = 64/168 (38%), Gaps = 26/168 (15%)
Query: 556 QNPAEHKPSVIVTRRRSTRIP-GTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTK 614
Q+P +P + + + P GT A +++L S + +Q PR +PL
Sbjct: 864 QHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQLPASQSALQSQQPPREQPLPPAPL 923
Query: 615 AGTFIAPPVYSNITPY---QSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSGLYF 671
A I PP + I Q+H P P + LP PPP L P+
Sbjct: 924 AMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLP---PPPALKPL-------- 972
Query: 672 NAIISTSTIPA--PPPI--------TPKSAHRTLLRTNSAEVTPPVLS 709
+ +ST P+ PPP+ P S + T S + PP S
Sbjct: 973 -SSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPAS 1019
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 55.1 bits (131), Expect = 3e-07
Identities = 95/383 (24%), Positives = 132/383 (34%), Gaps = 80/383 (20%)
Query: 21 QEPAPKEQPPPLQPP--QQSIR----------VKEEQYLGHEGPGGA------VSTSQPV 62
Q P + PPP PP QQ IR + Q+ H P + T + +
Sbjct: 312 QPPVVPQAPPPPPPPPQQQPIRSLFQPQPLQPLLPVQHPHHPSPPQGMHMPPQLETPRMM 371
Query: 63 ELPPPSSLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGG--------G 114
PPP + ++ P + QV + P S P GP+R G
Sbjct: 372 MTPPPVTPQQPKNIHINPHFKGTVVTPVQVPLLPVP-SQPRPAVGPQRFPGPPEFPQHTP 430
Query: 115 GVSDSSWQQQP--------GQPPPHSTWNCHSLSLYSATK---------GSPHPGVGVPT 157
G +S+ Q P PPP + L + + SP P PT
Sbjct: 431 GPVPNSFSQPPRLPLQDQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQRSPPPPPPPPT 490
Query: 158 YYN--HP----EALKREKAGGPQLDRYVRPMMPQKVQLEVG-RPQAPLNSFHAAKK---- 206
N HP L + G + +P+ P++ + +P P+ H ++
Sbjct: 491 LLNSSHPVPTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPPGPVGILHFSQPGSAT 550
Query: 207 -----PPNQSL---PLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQ 258
PP Q P QPF + Q QGP P PQ QQ QQQP Q
Sbjct: 551 TRPFIPPRQPFLPGPGQPFL-----PTHTQPNLQGPLHPPLPPPHQPQPQQPQQQPPPQH 605
Query: 259 QQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMN 318
Q Q P PQ P Q P P Q H HH ++ P P P
Sbjct: 606 QPPHQPPHQPP--PQHQPPPQHPPQHP---------PQHQHHHHHHHLSVPPPPLMPMSQ 654
Query: 319 PELRKALLQDSAPQPALPQVQIP 341
P+ R +Q + PQ + ++Q P
Sbjct: 655 PQFRPH-VQTAQPQASSSRMQCP 676
Score = 36.2 bits (82), Expect = 0.17
Identities = 80/333 (24%), Positives = 107/333 (32%), Gaps = 60/333 (18%)
Query: 20 GQEPAPKEQPP--PLQ------PPQQSIRVKEEQYLGHEGPGGAVS---TSQPVELPPPS 68
G P QPP PLQ PP Q ++ +LG G S Q PPP
Sbjct: 431 GPVPNSFSQPPRLPLQDQWRAPPPPQD---RDPFFLGVSGEPRFPSHLFLEQRSPPPPPP 487
Query: 69 SLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQP 128
LLNS P ++ P PG + G V +P
Sbjct: 488 PPTLLNSSHPVPTQS--------------PLPFTQPGPAFNQQGQQPVFPRERPVRPALQ 533
Query: 129 PPHSTWNCHSLSLYSATKGS---PH----PGVGVPTYYNHPEALKREKAGGPQLDRYVRP 181
PP H SAT P PG G P H + P L + P
Sbjct: 534 PPGPVGILHFSQPGSATTRPFIPPRQPFLPGPGQPFLPTHTQ---------PNLQGPLHP 584
Query: 182 MMPQKVQLEVGRPQA-PLNSFHAAKKPPNQS------LPLQPFQLAFGHQVNRQVFRQGP 234
+P Q + +PQ P +PP+Q P P Q HQ +
Sbjct: 585 PLPPPHQPQPQQPQQQPPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHHHHHHLSV 644
Query: 235 PPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQM------PLFENFYSMPQQPSQ--QPQ 286
PPP + PQ + Q Q Q + PQ +N P Q Q P+
Sbjct: 645 PPPPLMPMSQPQFRPHVQTAQPQASSSRMQCPQRQGLRHNTTSQNVSKRPMQQMQPTAPR 704
Query: 287 DFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNP 319
+ L+ P+ SH+ S + P+ + P
Sbjct: 705 NSNLREL-PIAPSHVIEMSSSRCSATPSAQVKP 736
Score = 32.3 bits (72), Expect = 2.4
Identities = 53/210 (25%), Positives = 68/210 (32%), Gaps = 56/210 (26%)
Query: 229 VFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDF 288
V Q PPPP P QQQP + Q Q P +P+ P PS PQ
Sbjct: 315 VVPQAPPPPPP---------PPQQQPIRSLFQPQPLQPLLPV-----QHPHHPS-PPQGM 359
Query: 289 GLQPAGPLGQSHLAHHSMAPYPF----PPNPDMNPELRKALLQ---------DSAPQPAL 335
+ P Q M P P P N +NP + ++ S P+PA+
Sbjct: 360 HMPP-----QLETPRMMMTPPPVTPQQPKNIHINPHFKGTVVTPVQVPLLPVPSQPRPAV 414
Query: 336 PQVQIP----FPRRS-------------RRLSKEGILPPSALDG----AGTQPGQEATGN 374
+ P FP+ + L + PP D G +
Sbjct: 415 GPQRFPGPPEFPQHTPGPVPNSFSQPPRLPLQDQWRAPPPPQDRDPFFLGVSGEPRFPSH 474
Query: 375 LFLHHW--PLQQPPPGSLGQPHPEALGFPL 402
LFL P PPP L HP PL
Sbjct: 475 LFLEQRSPPPPPPPPTLLNSSHPVPTQSPL 504
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 54.7 bits (130), Expect = 4e-07
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 831 DQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGD 890
+ W E++ F + + K+F L+ ++ KTVA+CV +YY KK ++
Sbjct: 430 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRR 489
Query: 891 VDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQ 950
S ++ Q++ + + Q PR ++ +E+ E ++E ++P E ++E ++
Sbjct: 490 RGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEK-EAEKEEEKPEVENDKE-DLLK 547
Query: 951 EKEEQEEGRER-SRRAAAVKATQT 973
EK + G + + A A K +T
Sbjct: 548 EKTDDTSGEDNDEKEAVASKGRKT 571
Score = 43.9 bits (102), Expect = 8e-04
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 36/185 (19%)
Query: 822 LATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIG 881
LA+ S +W E + KG+ + +++ + +++ +KTV+QC FY+ YKK+ +
Sbjct: 604 LASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL- 662
Query: 882 RNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKE 941
DE Q +++++ +ER +++ K P
Sbjct: 663 -------------DEILQQHKLKME-------------------KERNARRKKKKAPAAA 690
Query: 942 GEEEV-PEIQEKEEQEEGRERSRRAAAVKATQTLQANESASDILILRSHESNAPGSAGGQ 1000
EE P + E EE E V+ + N +SD + S + A G
Sbjct: 691 SEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEATVNN--SSDTESIPSPHTEAAKDTGQN 748
Query: 1001 ASEKP 1005
+ P
Sbjct: 749 GPKPP 753
Score = 35.0 bits (79), Expect = 0.37
Identities = 70/280 (25%), Positives = 103/280 (36%), Gaps = 46/280 (16%)
Query: 194 PQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQ 253
PQ PL+ K+ ++ + P Q+ H+ R+ P P P A PPQ Q +
Sbjct: 940 PQKPLD----LKQLKQRAAAIPPIQVTKVHEPPRE--DAAPTKPAPPAPPPPQNLQPESD 993
Query: 254 PQQQQ------QQQQAALP-----QMPLFENFYSMPQQ--PSQQP-QDFGLQ-PAGPLGQ 298
QQ + + A P + P+F ++ Q P P GL P P
Sbjct: 994 APQQPGSSPRGKSRSPAPPADKEAEKPVFFPAFAAEAQKLPGDPPCWTSGLPFPVPPREV 1053
Query: 299 SHLAHHSMAPYPFPPNPDMNPELRKALLQDSAP-QPALPQVQIPFPRRSRRLSKEGILPP 357
+ H+ P F P +P L L + P P P + P P S P
Sbjct: 1054 IKASPHAPDPSAFSYAPPGHP-LPLGLHDTARPVLPRPPTISNPPPLIS------SAKHP 1106
Query: 358 SALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLP----DG 413
S L+ Q G + G H P + +G P +G PL + +L P
Sbjct: 1107 SVLE---RQIGAISQGMSVQLHVPYSEHAKAPVG---PVTMGLPLPMDPKKLAPFSGVKQ 1160
Query: 414 ERLAPNGREREAPAMGSEEGMRAVSTGDCGQVLRGGVIQS 453
E+L+P G+ ++G V T VLRG + S
Sbjct: 1161 EQLSPRGQAGPPESLG-------VPTAQEASVLRGTALGS 1193
Score = 34.7 bits (78), Expect = 0.48
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 247 KQQQQQQPQQQQQQQQAALPQ 267
+QQQQQQ QQQQQQQQ +P+
Sbjct: 494 QQQQQQQQQQQQQQQQQPMPR 514
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 246 QKQQQQQQPQQQQQQQQ 262
Q+QQQQQQ QQQQQQQQ
Sbjct: 494 QQQQQQQQQQQQQQQQQ 510
Score = 33.5 bits (75), Expect = 1.1
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
Query: 916 VPLPRRESPSEERL-EPKREVKEPRKEGEEEVPEIQEKEEQ-------EEGRERSRRAAA 967
+P P +P+ E P P V +EKEE+ EEG E+ AA
Sbjct: 773 IPAPTEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQKPPAAE 832
Query: 968 VKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSEKKKKTET 1027
A T +A E + E A G +A+E EG K+ + S + ++
Sbjct: 833 ELAVDTGKAEEPVKSECTEEAEEGPAKGK-DAEAAEATAEGALKAEKKEGGSGRATTAKS 891
Query: 1028 FSKTQNQENTFPC 1040
Q+ +++ C
Sbjct: 892 SGAPQDSDSSATC 904
Score = 32.3 bits (72), Expect = 2.4
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 247 KQQQQQQPQQQQQQQQAALP 266
K QQQQQ QQQQQQQQ P
Sbjct: 492 KSQQQQQQQQQQQQQQQQQP 511
Score = 31.6 bits (70), Expect = 4.1
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 246 QKQQQQQQPQQQQQQQQ 262
+ QQQQQQ QQQQQQQQ
Sbjct: 492 KSQQQQQQQQQQQQQQQ 508
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 54.7 bits (130), Expect = 4e-07
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 3/144 (2%)
Query: 831 DQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGD 890
+ W E++ F + + K+F L+ ++ KTVA+CV +YY KK ++
Sbjct: 430 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENYKSLVRRSYRR 489
Query: 891 VDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKEGEEEVPEIQ 950
S ++ Q++ + + Q PR ++ +E+ E ++E ++P E ++E ++
Sbjct: 490 RGKSQQQQQQQQQQQQQQQQQPMPRSSQEEKDEKEKEK-EAEKEEEKPEVENDKE-DLLK 547
Query: 951 EKEEQEEGRER-SRRAAAVKATQT 973
EK + G + + A A K +T
Sbjct: 548 EKTDDTSGEDNDEKEAVASKGRKT 571
Score = 44.7 bits (104), Expect = 5e-04
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 34/157 (21%)
Query: 822 LATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIG 881
LA+ S +W E + KG+ + +++ + +++ +KTV+QC FY+ YKK+ +
Sbjct: 604 LASMELNESSRWTEEEMETAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL- 662
Query: 882 RNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPSEERLEPKREVKEPRKE 941
DE Q +++++ +ER +++ K P
Sbjct: 663 -------------DEILQQHKLKME-------------------KERNARRKKKKAPAAA 690
Query: 942 GEEEV-PEIQEKEEQEEGRERSRRAAAVKATQTLQAN 977
EE P + E EE E V+ + L A+
Sbjct: 691 SEEAAFPPVVEDEEMEASGVSGNEEEMVEEAEALHAS 727
Score = 34.7 bits (78), Expect = 0.48
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 247 KQQQQQQPQQQQQQQQAALPQ 267
+QQQQQQ QQQQQQQQ +P+
Sbjct: 494 QQQQQQQQQQQQQQQQQPMPR 514
Score = 33.5 bits (75), Expect = 1.1
Identities = 15/17 (88%), Positives = 16/17 (94%)
Query: 246 QKQQQQQQPQQQQQQQQ 262
Q+QQQQQQ QQQQQQQQ
Sbjct: 494 QQQQQQQQQQQQQQQQQ 510
Score = 33.5 bits (75), Expect = 1.1
Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
Query: 916 VPLPRRESPSEERL-EPKREVKEPRKEGEEEVPEIQEKEEQ-------EEGRERSRRAAA 967
+P P +P+ E P P V +EKEE+ EEG E+ AA
Sbjct: 790 IPAPTEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEKEEETAAAPPVEEGEEQKPPAAE 849
Query: 968 VKATQTLQANESASDILILRSHESNAPGSAGGQASEKPREGTGKSRRALPFSEKKKKTET 1027
A T +A E + E A G +A+E EG K+ + S + ++
Sbjct: 850 ELAVDTGKAEEPVKSECTEEAEEGPAKGK-DAEAAEATAEGALKAEKKEGGSGRATTAKS 908
Query: 1028 FSKTQNQENTFPC 1040
Q+ +++ C
Sbjct: 909 SGAPQDSDSSATC 921
Score = 32.3 bits (72), Expect = 2.4
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 247 KQQQQQQPQQQQQQQQAALP 266
K QQQQQ QQQQQQQQ P
Sbjct: 492 KSQQQQQQQQQQQQQQQQQP 511
Score = 31.6 bits (70), Expect = 4.1
Identities = 14/17 (82%), Positives = 15/17 (88%)
Query: 246 QKQQQQQQPQQQQQQQQ 262
+ QQQQQQ QQQQQQQQ
Sbjct: 492 KSQQQQQQQQQQQQQQQ 508
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 53.5 bits (127), Expect = 1e-06
Identities = 140/611 (22%), Positives = 205/611 (33%), Gaps = 100/611 (16%)
Query: 104 PGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPE 163
PG GP G G G +S + P +P L A +P + P
Sbjct: 61 PGPGPGPGPGPGPGSTSRRLDPKEP----------LGNQRAASPTPKQASATTPGHESPR 110
Query: 164 ALKREKAGGPQLDRYVRPMMPQKVQLEVGR-----------PQAPLNSFHAAKKPPNQSL 212
+ + G + D R + GR P +P + A P +
Sbjct: 111 ETRAQGPAGQEADGPRRTLQVDSRTQRSGRSPSVSPDRGSTPTSPYSVPQIAPLPSSTLC 170
Query: 213 PL--------QPFQLAFG--HQVNRQVFRQGPPPPNP----VAAFPPQKQQQQQ------ 252
P+ P Q F Q + +V Q PNP V + Q Q+
Sbjct: 171 PICKTSDLTSTPSQPNFNTCTQCHNKVCNQCGFNPNPHLTQVKEWLCLNCQMQRALGMDM 230
Query: 253 --QPQQQQQQQQAALPQMPLFENFYSMPQQPSQQP-QDFGLQPAGPLGQSHLAHHSMA-P 308
P+ + QQQ P +S +QP +P Q+ P GP S A + A
Sbjct: 231 TTAPRSKSQQQL----HSPALSPAHSPAKQPLGKPDQERSRGPGGPQPGSRQAETARATS 286
Query: 309 YPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPG 368
P P PE+ + + PQP P P P +K P+ L GA Q
Sbjct: 287 VPGPAQAAAPPEVGR--VSPQPPQPTKPSTAEPRPPAGEAPAKSATAVPAGL-GATEQTQ 343
Query: 369 QEATGNLFLHHWPL---------QQPPPGSLGQPHPEALGFPLELRESQLLPDGERLAPN 419
+ TG LF L QP + GQP P + ++ + L
Sbjct: 344 EGLTGKLFGLGASLLTQASTLMSVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSG 403
Query: 420 GREREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTLAQKAV----E 475
AP +E G R G + + G S + R Q A+ K +
Sbjct: 404 PGPGPAPGAKTEPGARMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKPKTMPKERA 463
Query: 476 LASLQNAKDGSGSEEKRKSVLASTTK------CG-------VEFSE---PSLATKRARED 519
+ L A+ GS+ +T + CG VE +E + TKR E
Sbjct: 464 ICPLCQAELNVGSKSPANYNTCTTCRLQVCNLCGFNPTPHLVEKTEWLCLNCQTKRLLEG 523
Query: 520 SGMVPLII--------PVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRR 571
S P + PV P R + Q G G G P K S + T +
Sbjct: 524 SLGEPTPLPPPTSQQPPVGAPHRASGTSPLKQKG---PQGLGQPSGPLPAKASPLST--K 578
Query: 572 STRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQ 631
++ +P + A QA+ + EPS K + + +PTKA PP + TP
Sbjct: 579 ASPLP-SKASPQAKPLRA---SEPS--KTPSSVQEKKTRVPTKAEPMPKPPPETTPTPAT 632
Query: 632 SHLRSPVRLAD 642
++S VR A+
Sbjct: 633 PKVKSGVRRAE 643
Score = 39.3 bits (90), Expect = 0.020
Identities = 62/236 (26%), Positives = 83/236 (35%), Gaps = 29/236 (12%)
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPE-----RGGGGGVSDSSWQQQPGQ--PPPH 131
GP R S + WP+ PGR G G S ++PG+ PH
Sbjct: 3611 GPARHSYHDYDEPPEEGLWPHDEGGPGRHASAKEHRHGDHGRHSGRHTGEEPGRRAAKPH 3670
Query: 132 ST-WNCHSLSLYSATKGSPH-PGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQL 189
+ H +S +P P G P Y + E + +A Y +K
Sbjct: 3671 ARDLGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQPSRASSA----YHHASDSKKGSR 3726
Query: 190 EVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQ 249
+ A L S K P LQ Q A G Q ++ + P+ A+ PQ QQ
Sbjct: 3727 QAHSGPAALQS----KAEPQAQPQLQGRQAAPGPQQSQSPSSR--QIPSGAASRQPQTQQ 3780
Query: 250 QQ-----QQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQD-----FGLQPAGP 295
QQ Q PQQ Q + P QP+ +PQ G QPAGP
Sbjct: 3781 QQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGP 3836
Score = 34.7 bits (78), Expect = 0.48
Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 26 KEQPPPLQPPQQSI-RVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVYGPERTS 84
++Q LQPPQQ++ + + +Q G A + SQP P P GP R
Sbjct: 3781 QQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPSTATGPQPAGPPRAE 3840
Query: 85 AAMLSQQVASV----KWPNSVMAPGRGP---ERGGGGGVSDSSWQQQPG 126
S+ A + P + APG GP + G G + + QPG
Sbjct: 3841 QTNGSKGTAKAPQQGRAPQAQPAPGPGPAGVKAGARPGGTPGAPAGQPG 3889
Score = 32.0 bits (71), Expect = 3.1
Identities = 48/186 (25%), Positives = 65/186 (34%), Gaps = 26/186 (13%)
Query: 47 LGHEGPGGAVSTSQPVELPPPSSLALLNSVVYGPERTSAAM---LSQQVASVKWPNSVMA 103
L GP T+ LP +++ + ++Y T A ++ Q ASV P
Sbjct: 2164 LAQYGPAAGQGTAVRQLLPSTATVRAADGMIYSTINTPIAATLPITTQPASVLRPMVRGG 2223
Query: 104 PGRGPERGGGGGVSDSSWQQQPGQPP-----PHSTWNCHSLSLYSATKGSPHPGVGVPTY 158
R GG V +S + P P P + + S + P P G P Y
Sbjct: 2224 MYRPYASGGITAVPLTSLTRVPMIAPRVPLGPTGLYRYPAPSRFPIASSVP-PAEG-PVY 2281
Query: 159 YNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQ-----------APLNSFHAAKKP 207
P A K AGGP RP MP E P AP + A +KP
Sbjct: 2282 LGKPAAAKAPGAGGPS-----RPEMPVGAAREEPLPTTTPAAIKEAAGAPAPAPLAGQKP 2336
Query: 208 PNQSLP 213
P + P
Sbjct: 2337 PADAAP 2342
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 53.1 bits (126), Expect = 1e-06
Identities = 95/432 (21%), Positives = 141/432 (32%), Gaps = 105/432 (24%)
Query: 18 FGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVV 77
+GG P ++Q PP P Q GH PG + P P +
Sbjct: 395 YGGTNPYSQQQGPPSGPQQ-----------GHGYPGQPYGSQTPQRYP---------MTM 434
Query: 78 YGPERTSAAMLS--QQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWN 135
G +++ LS QQ+ P G + G G Q GQ P ++
Sbjct: 435 QGRAQSAMGGLSYTQQI-----------PPYGQQGPSGYG--------QQGQTPYYN--- 472
Query: 136 CHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQ 195
+ SPHP P Y P P + +P Q+ Q + + Q
Sbjct: 473 ----------QQSPHPQQQQPPYSQQP----------PSQTPHAQPSYQQQPQSQPPQLQ 512
Query: 196 APLNSF-HAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQP 254
+ + +PP+Q P P+ Q Q Q PP + A P +QQQ QQP
Sbjct: 513 SSQPPYSQQPSQPPHQQSPA-PYP---SQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQP 568
Query: 255 QQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQ---PAGPLGQSHLAHHSMAPYPF 311
QQAA PQ PQ Q + Q P L Q + +
Sbjct: 569 APSTLSQQAAYPQ----------PQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM 618
Query: 312 PPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPS-ALDGAGTQPGQE 370
+ ++ +L + P L P + EG L P + G + G++
Sbjct: 619 TSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLP-----MGTEGALSPGVSTSGISSSQGEQ 673
Query: 371 ATGNLFLHHWPLQQP--------PPGSLGQPHPEALGFPLELRESQLLPDGERLAPNGRE 422
+ P Q P PG G P P +G P + +S+ P P +
Sbjct: 674 SN--------PAQSPFSPHTSPHLPGIRG-PSPSPVGSPASVAQSRSGPLSPAAVPGNQM 724
Query: 423 REAPAMGSEEGM 434
P G + +
Sbjct: 725 PPRPPSGQSDSI 736
Score = 43.5 bits (101), Expect = 0.001
Identities = 81/379 (21%), Positives = 126/379 (33%), Gaps = 41/379 (10%)
Query: 25 PKEQPPP------LQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVY 78
PK QPP +Q PQ G + +++ ++PP ++ NSV
Sbjct: 1128 PKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSVGI 1187
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHS 138
+ + Q + PN PG P + S++ P + P S
Sbjct: 1188 QDAFNDGSDSTFQKRNSMTPN----PGYQPSMNTSDMMGRMSYE--PNKDPYGSMRKAPG 1241
Query: 139 LSLYSATKGSPHPGVGVPTYYNHPEAL--------KREKAGGPQLDRYVRPMMPQKVQLE 190
+ ++ P+ G+G P L + GGP P + + +
Sbjct: 1242 SDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQHYPYGGPYDRVRTEPGIGPEGNMS 1301
Query: 191 VGRPQAPL-------NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAF 243
G PQ L + ++ PP Q Q ++G+Q + Q G P P+
Sbjct: 1302 TGAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTM 1361
Query: 244 PPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQ-QPQDFGLQPAGPLGQSHLA 302
Q+QQ ++P A + YS+P Q QPQ L PA P S
Sbjct: 1362 YQQQQQNYKRPMDGTYGPPAKRHE----GEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQ 1417
Query: 303 HHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLS------KEGILP 356
+P N N A PQ Q PF R+S + +P
Sbjct: 1418 AAQPSPQQDVYNQYGNAYPATATAATERRPAGGPQNQFPFQFGRDRVSAPPGTNAQQNMP 1477
Query: 357 PSALDG---AGTQPGQEAT 372
P + G A + Q+ T
Sbjct: 1478 PQMMGGPIQASAEVAQQGT 1496
Score = 35.0 bits (79), Expect = 0.37
Identities = 73/337 (21%), Positives = 116/337 (34%), Gaps = 48/337 (14%)
Query: 21 QEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPP------------S 68
Q +P +Q P QP ++ ++ Y + + PPP S
Sbjct: 555 QAQSPYQQQQPQQPAPSTLS-QQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS 613
Query: 69 SLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQP 128
S + S G E + ++ S+ + S+ G E GVS S G+
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQ 673
Query: 129 --PPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGP-----------QL 175
P S ++ H+ +G VG P + A P Q
Sbjct: 674 SNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQS 733
Query: 176 DRYVRPMMPQK-VQLEVGRPQA-PLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQG 233
D + P M Q + + G Q P +++ +P + P QP G Q++ + G
Sbjct: 734 DSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPS----GGQIHTGM---G 786
Query: 234 PPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQ-- 291
N + ++ PQ Q Q +Q ALP N+ S P G Q
Sbjct: 787 SYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNA----NYPSAGMAGGINPMGAGGQMH 842
Query: 292 ------PAGPLGQSHLAHHSMAPYPFPPN-PDMNPEL 321
P G L ++H SM P+ PN +M P++
Sbjct: 843 GQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQV 879
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 53.1 bits (126), Expect = 1e-06
Identities = 95/432 (21%), Positives = 141/432 (32%), Gaps = 105/432 (24%)
Query: 18 FGGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVV 77
+GG P ++Q PP P Q GH PG + P P +
Sbjct: 395 YGGTNPYSQQQGPPSGPQQ-----------GHGYPGQPYGSQTPQRYP---------MTM 434
Query: 78 YGPERTSAAMLS--QQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWN 135
G +++ LS QQ+ P G + G G Q GQ P ++
Sbjct: 435 QGRAQSAMGGLSYTQQI-----------PPYGQQGPSGYG--------QQGQTPYYN--- 472
Query: 136 CHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQ 195
+ SPHP P Y P P + +P Q+ Q + + Q
Sbjct: 473 ----------QQSPHPQQQQPPYSQQP----------PSQTPHAQPSYQQQPQSQPPQLQ 512
Query: 196 APLNSF-HAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQP 254
+ + +PP+Q P P+ Q Q Q PP + A P +QQQ QQP
Sbjct: 513 SSQPPYSQQPSQPPHQQSPA-PYP---SQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQP 568
Query: 255 QQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQ---PAGPLGQSHLAHHSMAPYPF 311
QQAA PQ PQ Q + Q P L Q + +
Sbjct: 569 APSTLSQQAAYPQ----------PQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSM 618
Query: 312 PPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPS-ALDGAGTQPGQE 370
+ ++ +L + P L P + EG L P + G + G++
Sbjct: 619 TSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLP-----MGTEGALSPGVSTSGISSSQGEQ 673
Query: 371 ATGNLFLHHWPLQQP--------PPGSLGQPHPEALGFPLELRESQLLPDGERLAPNGRE 422
+ P Q P PG G P P +G P + +S+ P P +
Sbjct: 674 SN--------PAQSPFSPHTSPHLPGIRG-PSPSPVGSPASVAQSRSGPLSPAAVPGNQM 724
Query: 423 REAPAMGSEEGM 434
P G + +
Sbjct: 725 PPRPPSGQSDSI 736
Score = 38.9 bits (89), Expect = 0.026
Identities = 91/363 (25%), Positives = 129/363 (35%), Gaps = 98/363 (26%)
Query: 59 SQPVELPPPSSLALLNSVVYGPERTSAAMLS----QQVASVKWPNSVMAPGRGPERGGGG 114
SQP PP + + P+ TS++M + P+S + P G R
Sbjct: 1126 SQPKIQPPSPAGSGSMQGPQTPQSTSSSMAEGGDLKPPTPASTPHSQIPPLPGMSRSNSV 1185
Query: 115 GV-------SDSSWQQQ------PGQPPPHSTWNCHSLSLYSATK---GSPHPGVGVPTY 158
G+ SDS++Q++ PG P +T + Y K GS G
Sbjct: 1186 GIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDMMGRMSYEPNKDPYGSMRKAPG---- 1241
Query: 159 YNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQ 218
+ P + G D Y R P + +G Q H P + +P
Sbjct: 1242 -SDPFMSSGQGPNGGMGDPYSRAAGPGLGNVAMGPRQ------HYPYGGPYDRVRTEP-- 1292
Query: 219 LAFGHQVNRQVFRQGPPPPNPVAA-----------FPPQKQQQQQQ-------------- 253
G + N G P PN + + +PPQ+QQQQQQ
Sbjct: 1293 -GIGPEGNMST---GAPQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFSTQGT 1348
Query: 254 ------PQQQ----QQQQQAALPQMPL---FENFYSMPQQPSQQP---QDFGLQPAG-PL 296
P QQ QQQQQ + P PL EN S PS+ P +Q AG P+
Sbjct: 1349 PSGSPFPSQQTTMYQQQQQVSSP-APLPRPMENRTS----PSKSPFLHSGMKMQKAGPPV 1403
Query: 297 GQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILP 356
SH+A P P P M + +D P + P ++ RRL+ + I
Sbjct: 1404 PASHIA-------PAPVQPPM-------IRRDITFPPGSVEATQPVLKQRRRLTMKDIGT 1449
Query: 357 PSA 359
P A
Sbjct: 1450 PEA 1452
Score = 35.0 bits (79), Expect = 0.37
Identities = 73/337 (21%), Positives = 116/337 (34%), Gaps = 48/337 (14%)
Query: 21 QEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPP------------S 68
Q +P +Q P QP ++ ++ Y + + PPP S
Sbjct: 555 QAQSPYQQQQPQQPAPSTLS-QQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQAS 613
Query: 69 SLALLNSVVYGPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQP 128
S + S G E + ++ S+ + S+ G E GVS S G+
Sbjct: 614 SAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQ 673
Query: 129 --PPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGP-----------QL 175
P S ++ H+ +G VG P + A P Q
Sbjct: 674 SNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQS 733
Query: 176 DRYVRPMMPQK-VQLEVGRPQA-PLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQG 233
D + P M Q + + G Q P +++ +P + P QP G Q++ + G
Sbjct: 734 DSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPS----GGQIHTGM---G 786
Query: 234 PPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQ-- 291
N + ++ PQ Q Q +Q ALP N+ S P G Q
Sbjct: 787 SYQQNSMGSYGPQGGQYGPQGGYPRQPNYNALPNA----NYPSAGMAGGINPMGAGGQMH 842
Query: 292 ------PAGPLGQSHLAHHSMAPYPFPPN-PDMNPEL 321
P G L ++H SM P+ PN +M P++
Sbjct: 843 GQPGIPPYGTLPPGRMSHASMGNRPYGPNMANMPPQV 879
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 52.8 bits (125), Expect = 2e-06
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 723 INVGSRFQAEIPLMRDRALAAADPHKAD-LVWQPWEDLESSREKQRQVEDLLTAACSSIF 781
+ VG+ +QA IP A D LVW P+ + +R +++ + A
Sbjct: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAR-----LDEYIAIAKEK-- 111
Query: 782 PGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLF 841
G N E AL L + +I ++L L P+ P D+W + ++ LF
Sbjct: 112 --HGYNVEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKVLF 155
Query: 842 NKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
+ + + K F +Q+++ KT+A V++YY++KK
Sbjct: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 52.4 bits (124), Expect = 2e-06
Identities = 74/297 (24%), Positives = 94/297 (31%), Gaps = 45/297 (15%)
Query: 104 PGR--GPERGGGGGVSDSSWQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNH 161
PG+ GP GG +P PPP + S +G P G P
Sbjct: 54 PGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPP 113
Query: 162 PEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAF 221
P K GP RP P G+PQ P ++ P + Q
Sbjct: 114 PPG----KPQGPPPQGGNRPQGPPPP----GKPQGPPPQGDKSRSPRSPPGKPQGPPPQG 165
Query: 222 GHQVNRQVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQP 281
G+Q QGPPPP PP + ++ Q + Q PQ + S P +P
Sbjct: 166 GNQP------QGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKP 219
Query: 282 SQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIP 341
P G QP GP P PP P + P P PQ
Sbjct: 220 QGPPPQGGNQPQGP--------------PPPPGKPQGPPPQGGNKPQGPPPPGKPQGP-- 263
Query: 342 FPRRSRRLSKEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQP-HPEA 397
P + S+ PP G Q G G PPP + G P P+A
Sbjct: 264 -PAQGGSKSQSARSPPGKPQGPPQQEGNNPQG-----------PPPPAGGNPQQPQA 308
Score = 47.0 bits (110), Expect = 9e-05
Identities = 52/209 (24%), Positives = 68/209 (32%), Gaps = 35/209 (16%)
Query: 232 QGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQ 291
QGPPPP PP + + Q + Q PQ + S P +P P G Q
Sbjct: 48 QGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQ 107
Query: 292 PAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSK 351
P GP P PP P + P P PQ P +SR
Sbjct: 108 PQGP--------------PPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRS 153
Query: 352 EGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEA----LGFPLELRES 407
PP G Q G + G PPPG P P+ G P +
Sbjct: 154 ----PPGKPQGPPPQGGNQPQG---------PPPPPGKPQGPPPQGGKKPQGPPPPGKPQ 200
Query: 408 QLLPDGER----LAPNGREREAPAMGSEE 432
P G++ +P G+ + P G +
Sbjct: 201 GPPPQGDKSRSSQSPPGKPQGPPPQGGNQ 229
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 52.0 bits (123), Expect = 3e-06
Identities = 83/329 (25%), Positives = 110/329 (33%), Gaps = 62/329 (18%)
Query: 108 PERGGGGGVSDSSWQQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKR 167
PE G GG S +P PP + +L + G+ P G P
Sbjct: 2258 PESPGVGGGKAS----EPLLSPPPFGESRKALEVKKEELGASSPSYGPPNLGFVDSPSSG 2313
Query: 168 EKAGGPQL---DRYVRPMMPQKVQLEVG------RPQAPLNSFHAAKKPPNQSLPLQPFQ 218
GG +L D + P+ P+ Q+E RPQ P + A PP+ +P
Sbjct: 2314 THLGGLELKTPDVFKAPLTPRASQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGS 2373
Query: 219 LAFGHQVNRQVFRQGPPPPNPVAAFPPQK------QQQQQQPQQQQQQQQAALPQMPLFE 272
+ R PPPP A PP+ + PQ Q Q P+ E
Sbjct: 2374 YTDPYAQPPLTPRPQPPPPESCCALPPRSLPSDPFSRVPASPQSQSSSQSPLTPRPLSAE 2433
Query: 273 NFYSMPQQPSQQPQDFGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQ 332
F P P Q D PY PP+ + + L + PQ
Sbjct: 2434 AFCPSPVTPRFQSPD--------------------PYSRPPSRPQSRDPFAPLHKPPRPQ 2473
Query: 333 PALPQVQIPFPRRSRRLSKEGILPPSALDGAGTQPGQEATGNLFLHH--WPLQQPP---- 386
P P+V K G L ++L GAG P G H P QPP
Sbjct: 2474 P--PEVAF----------KAGSLAHTSL-GAGGFPAALPAGPAGELHAKVPSGQPPNFVR 2520
Query: 387 -PGS---LGQPHPEALGFPLELRESQLLP 411
PG+ +G P P FP + E L P
Sbjct: 2521 SPGTGAFVGTPSPMRFTFPQAVGEPSLKP 2549
Score = 46.2 bits (108), Expect = 2e-04
Identities = 101/469 (21%), Positives = 175/469 (37%), Gaps = 74/469 (15%)
Query: 246 QKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQP-----QDFGLQPAGPLGQSH 300
Q Q+ QQ QQQQQQQQ L Q+ ++ QQ Q P Q G +P G + S
Sbjct: 3729 QLAQKLQQQQQQQQQQQHLLGQV-------AIQQQQQQGPGVQTNQALGPKPQGLMPPS- 3780
Query: 301 LAHHSMAPYPFPPNPDMNPE-----LRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGIL 355
+H + P P P+ + A+LQ P PQ P R +++ +L
Sbjct: 3781 -SHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQ----GPHRQVLMTQSRVL 3835
Query: 356 --PPSALDGAG--------------TQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEA-- 397
P A G G Q Q+ L H LQQ GQP A
Sbjct: 3836 SSPQLAQQGQGLMGHRLVTAQQQQQQQQHQQQGSMAGLSH--LQQSLMSHSGQPKLSAQP 3893
Query: 398 LGFPLELRESQLLPDGERLAPNGREREAPAMGSEEGMRAVSTGDCGQVLRGGVIQSTRRR 457
+G +L++ Q L ++L +++ + + + Q + +Q +++
Sbjct: 3894 MGSLQQLQQQQQLQQQQQLQQQQQQQ-------LQQQQQLQQQQLQQQQQQQQLQQQQQQ 3946
Query: 458 RRASQEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVLA----STTKCGVEFSEPSLAT 513
+ Q+ L Q+ + Q + G + +++L+ + + P+
Sbjct: 3947 QLQQQQQQLQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQQQQQQVALGPGMPAKPL 4006
Query: 514 KRAREDSGMVPLIIPVSVPVRTVDPTEAAQA--------GGLDEDGKGPEQ---NPAEHK 562
+ + P ++ TVDP +++A GG G PE P E K
Sbjct: 4007 QHFSSPGALGPTLLLTGKEQNTVDPAVSSEATEGPSTHQGGPLAIGTTPESMATEPGEVK 4066
Query: 563 PSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKAGTF--IA 620
PS+ +++ Q Q + +++L +P +R P Q+ + L+ G+ +
Sbjct: 4067 PSL----SGDSQLLLVQPQPQPQPSSLQL--QPPLRLPGQQQQQVSLLHTAGGGSHGQLG 4120
Query: 621 PPVYSNITPYQSHLRSP-VRLADHPSERSFELPPYTPPPILSPVREGSG 668
S + L P V L D P + L P + P++ +G
Sbjct: 4121 SGSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQQPMLERPMQNNTG 4169
Score = 43.9 bits (102), Expect = 8e-04
Identities = 147/681 (21%), Positives = 232/681 (34%), Gaps = 121/681 (17%)
Query: 122 QQQPGQPPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRP 181
++ P PPP S S +S + SP + PE E P L+ + P
Sbjct: 499 EESPLSPPPES-------SPFSPLEESP---------LSPPE----ESPPSPALETPLSP 538
Query: 182 MMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVA 241
P+ L ++PL+ PP + LP P + R PPP
Sbjct: 539 P-PEASPLSPPFEESPLS-------PPPEELPTSP---------PPEASRLSPPPEESPM 581
Query: 242 AFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSHL 301
+ PP++ P+ + LF F P P + P P ++
Sbjct: 582 SPPPEESPMSPPPEASR-----------LFPPFEESPLSPPPEES-----PLSPPPEASR 625
Query: 302 AHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPPSALD 361
P P P+ +P + +P P + ++ P +E L P +
Sbjct: 626 LSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPP--------PEESPLSPPPEE 677
Query: 362 GAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLLP---------- 411
+ P + + + P PP S P PE L L ES LLP
Sbjct: 678 SPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPLLPLPEEPQLCPR 737
Query: 412 -DGERLAPNGREREAPAMGSEEGMR-AVSTGDCGQVLRGGVIQSTRRRRRASQEANLLTL 469
+G L+P E E + + + S +A L
Sbjct: 738 SEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVPEEPHLSPQAEGPHL 797
Query: 470 AQKAVELASLQNAKDGSGS---EEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVP-L 525
+ + EL ++ S EE S + + EP L+ + E+S + P L
Sbjct: 798 SPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEESHLSPQSEEPCLSPR--PEESHLSPEL 855
Query: 526 IIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTDAQAQAE 585
P P P E Q +E P P E S ++ + E
Sbjct: 856 EKPPLSPRPEKPPEEPGQCPAPEELPLFPP--PGEPSLSPLLGEPALSEPGEPPLSPLPE 913
Query: 586 DMNVKLEGEPSVRKPKQRPRPEPLIIP-TKAGTFIAPPVYSNI------------TPYQS 632
++ + GEPS+ P+ P P+PL P + T APP S + + +S
Sbjct: 914 ELPLSPSGEPSL-SPQLMP-PDPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPES 971
Query: 633 HLRSPV--RLADHPSERSFELPPYTPPPIL-----SPVREGSGLYFNAIISTSTIPAPPP 685
L +P+ P E + P PP IL SPV S + P PP
Sbjct: 972 PLAAPILETPISPPPEANCTDPEPVPPMILPPSPGSPVGPASPILME--------PLPPQ 1023
Query: 686 ITPKSAHRTLLRTNS--AEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALA- 742
+P H +L+ NS ++ +PP L + +P+S ++ VG +AE+ M ++
Sbjct: 1024 CSPLLQH-SLVPQNSPPSQCSPPALP-LSVPSPLSPIGKV-VGVSDEAELHEMETEKVSE 1080
Query: 743 ----AADPHKADLVWQPWEDL 759
A +P + P DL
Sbjct: 1081 PECPALEPSATSPLPSPMGDL 1101
Score = 42.0 bits (97), Expect = 0.003
Identities = 126/612 (20%), Positives = 198/612 (32%), Gaps = 56/612 (9%)
Query: 128 PPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKRE-----KAG---GPQLDRYV 179
P P T +LY A +G P G P L+ E KAG PQL+ +
Sbjct: 375 PEPGDTPTDEPDALYVACQGQPKGGHVTSMQPKEPGPLQCEAKPLGKAGVQLEPQLEAPL 434
Query: 180 R---PMMPQKVQLEVGRP--QAPLNSFHAAKK--PPNQSLPLQPFQLAFGHQVNRQVFRQ 232
P++P + + P ++P + A + PP + LP P A ++R + +
Sbjct: 435 NEEMPLLPPPEESPLSPPPEESPTSPPPEASRLSPPPEELPASPLPEAL--HLSRPL-EE 491
Query: 233 GP--PPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGL 290
P PPP PP + ++ P P E S P + S F
Sbjct: 492 SPLSPPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSPPFEE 551
Query: 291 QPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLS 350
P P + P P+ +P +P P ++ PF
Sbjct: 552 SPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPF-------- 603
Query: 351 KEGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEALGFPLELRESQLL 410
+E L P + + P + + + P+ PP S P PE S+L
Sbjct: 604 EESPLSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLS 663
Query: 411 PDGERLAPNGREREAPAMGSEEGMRA------VSTGDCGQVLRGGVIQSTRRRRRASQEA 464
P E + E+P E R T + +E+
Sbjct: 664 PPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEES 723
Query: 465 NLLTLAQKAVELASLQNAKDGSGSEEKRKSVLASTTKCGVEFSEPSLATKRAREDSGMVP 524
LL L ++ + EE S + EP L+ + VP
Sbjct: 724 PLLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSPQPEEPCLCAVP 783
Query: 525 LIIPVSVPVRTVDPTEAAQAGGLDEDGKGPEQNPAEHKPSVIVTRRRSTRIPGTD---AQ 581
+S + + L + P +P +P + S P ++
Sbjct: 784 EEPHLSPQAEGPHLSPQPEELHLSPQTEEPHLSPVPEEPCLSPQPEESHLSPQSEEPCLS 843
Query: 582 AQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLA 641
+ E+ ++ P + KP PRPE P + G AP P SP L
Sbjct: 844 PRPEESHL----SPELEKPPLSPRPEK--PPEEPGQCPAPEELPLFPPPGEPSLSP--LL 895
Query: 642 DHPSERSFELPPYTPPPILSPVREGSGLYFNAIISTSTIPAPPPITPKSAHRTLLRTNSA 701
P+ PP +P P P+ + + P PPP++P + T +A
Sbjct: 896 GEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPD-PLPPPLSP-------IITAAA 947
Query: 702 EVTPPVLSVMGE 713
PP LS +GE
Sbjct: 948 ---PPALSPLGE 956
Score = 42.0 bits (97), Expect = 0.003
Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 228 QVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQD 287
QV +Q N +A + KQQQQQQ QQQQQQQ +A+ + ++ + + P Q
Sbjct: 3580 QVRKQQKEHTNLMAEYR-NKQQQQQQQQQQQQQQHSAVLALSPSQSPRLLTKLPGQLLPG 3638
Query: 288 FGLQ-----PAGPLGQSHLAHHSMAPYPFPPNPDMNPEL 321
GLQ P G G L MA P P +N L
Sbjct: 3639 HGLQPPQGPPGGQAGGLRLTPGGMALPGQPGGPFLNTAL 3677
Score = 40.8 bits (94), Expect = 0.007
Identities = 94/407 (23%), Positives = 140/407 (34%), Gaps = 97/407 (23%)
Query: 19 GGQEPAPKEQPPPLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPPSSLALLNSVVY 78
GG+ P PPP ++++ VK+E+ LG P P +L ++S
Sbjct: 2265 GGKASEPLLSPPPFGESRKALEVKKEE-LGASSPSYG-----------PPNLGFVDSPSS 2312
Query: 79 GPERTSAAMLSQQVASVKWPNSVMAPGRGPERGGGGGVSDSSWQQQPGQPPPHSTWNCHS 138
G + + V K P + A P+ G G +P +PPP
Sbjct: 2313 GTHLGGLELKTPDV--FKAPLTPRASQVEPQSPGLG--------LRPQEPPP-------- 2354
Query: 139 LSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKVQLEVGRPQAPL 198
A +P P +HP+ + G D Y +P + RPQ P
Sbjct: 2355 -----AQALAPSPP-------SHPDIFR----PGSYTDPYAQPPL-------TPRPQPPP 2391
Query: 199 NSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVA--AFPPQKQQQQQQPQQ 256
A P +SLP PF Q Q P P P++ AF P P+
Sbjct: 2392 PESCCALPP--RSLPSDPFS-RVPASPQSQSSSQSPLTPRPLSAEAFCP----SPVTPRF 2444
Query: 257 QQQQQQAALPQMPLFEN-FYSMPQQPSQQPQDFGLQ------------------PAGPLG 297
Q + P P + F + + P QP + + PAGP G
Sbjct: 2445 QSPDPYSRPPSRPQSRDPFAPLHKPPRPQPPEVAFKAGSLAHTSLGAGGFPAALPAGPAG 2504
Query: 298 QSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILPP 357
+ H+ P PPN +P + S + PQ + P + + G+ PP
Sbjct: 2505 EL----HAKVPSGQPPNFVRSPGTGAFVGTPSPMRFTFPQA-VGEPSLKPPVPQPGLPPP 2559
Query: 358 SALD---GAGTQPGQE-------ATGNLFLHHWPLQQPPPGSLGQPH 394
++ G G G+ ATGN PL P GS G+ +
Sbjct: 2560 HGINSHFGPGPTLGKPQSTNYTVATGNFHPSGSPL-GPSSGSTGESY 2605
Score = 39.7 bits (91), Expect = 0.015
Identities = 73/288 (25%), Positives = 103/288 (35%), Gaps = 32/288 (11%)
Query: 24 APKEQPPPLQPPQQS-----IRVKEEQYLGHEGPGGAVSTSQ-----PVELPPPSSLA-- 71
A K Q Q QQ + ++++Q +GPG V T+Q P L PPSS
Sbjct: 3731 AQKLQQQQQQQQQQQHLLGQVAIQQQQ---QQGPG--VQTNQALGPKPQGLMPPSSHQGL 3785
Query: 72 LLNSVVYGPERTSAAMLSQ-QVASVKWPNSVMAPGRGPERG---GGGGVSDSSWQQQPGQ 127
L+ + P + ML QVA ++ + +GP R V S Q GQ
Sbjct: 3786 LVQQLSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQVLMTQSRVLSSPQLAQQGQ 3845
Query: 128 PPPHSTWNCHSLSLYSATKGSPHPGVGVPTYYNHPEALKREKAGGPQLDRYVRPMMPQKV 187
++ + H G +H + +G P+L + Q
Sbjct: 3846 ----GLMGHRLVTAQQQQQQQQHQQQGSMAGLSHLQQSLMSHSGQPKLSAQPMGSLQQLQ 3901
Query: 188 QLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAFPPQK 247
Q + + Q L + Q L Q Q Q +Q +Q Q+
Sbjct: 3902 QQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQQQLQQQQQQQLQQQQ-------QQ 3954
Query: 248 QQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGP 295
QQQQQ QQQQ QQQ QM L ++ QQ Q L P P
Sbjct: 3955 LQQQQQQQQQQFQQQQQQQQMGLLNQSRTLLSPQQQQQQQVALGPGMP 4002
Score = 37.0 bits (84), Expect = 0.097
Identities = 97/375 (25%), Positives = 129/375 (34%), Gaps = 73/375 (19%)
Query: 228 QVFRQGPPPPNPVAAFPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQD 287
Q F Q P P + QQQQQQ QQQQ A + + F PS +
Sbjct: 2796 QAFYQRAPYPGSLPL-----QQQQQQLWQQQQATAATSMRFAMSARF------PSTPGPE 2844
Query: 288 FGLQPAG-PL-GQSHLAHHSMAPYPFPPNPDMNPELR----KALLQDSAPQPALPQVQ-- 339
G Q G PL G S P P P P ELR K L P P Q
Sbjct: 2845 LGRQALGSPLAGISTRLPGPGEPVPGPAGPAQFIELRHNVQKGLGPGGTPFPGQGPPQRP 2904
Query: 340 --IPFPRRSRRLSKEGI--------------LPPSALDGAGTQPGQEATGNLFLHHWPLQ 383
P RL+ EG+ PP+ P G L
Sbjct: 2905 RFYPVSEDPHRLAPEGLRGLAVSGLPPQKPSAPPAPELNNSLHPTPHTKGPTLPTGLELV 2964
Query: 384 QPPPGS--LGQPHP---EALGFPLELRE-------SQLLPDGERLAPNGREREAPAMGSE 431
PP S LG+P+P EA P E E + L D E LA G + E
Sbjct: 2965 NRPPSSTELGRPNPLALEAGKLPCEDPELDDDFDAHKALEDDEELAHLGLGVDVAKGDDE 3024
Query: 432 EG-MRAVSTGD--CGQVLRGG----------VIQSTRRRRRASQEANLLTLA-QKAVELA 477
G + + T D +L G + + ++ ++ L+ A +KA A
Sbjct: 3025 LGTLENLETNDPHLDDLLNGDEFDLLAYTDPELDTGDKKDIFNEHLRLVESANEKAEREA 3084
Query: 478 SLQNAKDGSGSEEKRKSVLASTTKCGVEFSEPSLAT-----KRAREDSGMVPLIIPVSVP 532
L+ + G E+R A + SEP LA+ K E+ G P ++
Sbjct: 3085 LLRGVEPGPLGPEERPPPAA-------DASEPRLASVLPEVKPKVEEGGRHPSPCQFTIA 3137
Query: 533 VRTVDPTEAAQAGGL 547
V+P AA + GL
Sbjct: 3138 TPKVEPAPAANSLGL 3152
Score = 35.8 bits (81), Expect = 0.22
Identities = 154/726 (21%), Positives = 242/726 (33%), Gaps = 133/726 (18%)
Query: 17 LFGGQEPAPKEQPP---PLQPPQQSIRVKEEQYLGHEGPGGAVSTSQPVELPPP----SS 69
LF E +P PP PL PP ++ R+ + P P+ PP S
Sbjct: 599 LFPPFEESPLSPPPEESPLSPPPEASRLSPPP---EDSPMSPPPEESPMSPPPEVSRLSP 655
Query: 70 LALLNSVVYGPERTSAAMLSQQVASVKWPN-SVMAPGRGPERGGGGGVSDSSWQQQPGQP 128
L +++ + PE + + ++ + P S ++P PE + S P P
Sbjct: 656 LPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPP--PEDSPTSPPPEDS----PASP 709
Query: 129 PPHSTWNCHSLS------------LYSATKGSPH--PGVGVPTYYNHPEALKREKAGGPQ 174
PP + L L ++G PH P P PE E PQ
Sbjct: 710 PPEDSLMSLPLEESPLLPLPEEPQLCPRSEG-PHLSPRPEEPHLSPRPE----EPHLSPQ 764
Query: 175 LDRYVRPMMPQKVQLEVGRPQAPLNSFHAAKKPPNQSLPLQPFQLAFGHQVNRQVFRQGP 234
+ P++ L P+ P H + + L QP +L Q P
Sbjct: 765 AEEPHLSPQPEEPCL-CAVPEEP----HLSPQAEGPHLSPQPEELHLSPQTEEP--HLSP 817
Query: 235 PPPNPVAA-------FPPQKQQQQQQPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQD 287
P P + PQ ++ P+ ++ L + PL P++P Q P
Sbjct: 818 VPEEPCLSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQCP-- 875
Query: 288 FGLQPAGPLGQSHLAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPALP-QVQIPF---- 342
A + +P P P ++P L + L + P P ++P
Sbjct: 876 --------------APEELPLFPPPGEPSLSPLLGEPALSEPGEPPLSPLPEELPLSPSG 921
Query: 343 -PRRSRRLSKEGILPP--SALDGAGTQPGQEATGNLFLHHWPLQQPPPGSLGQPHPEA-- 397
P S +L LPP S + A P G L + P G+ G PE+
Sbjct: 922 EPSLSPQLMPPDPLPPPLSPIITAAAPPALSPLGEL--------EYPFGAKGDSDPESPL 973
Query: 398 ----LGFPLELRESQLLPDGERLAPNGREREAPAMGSEEG-----MRAVSTGDCGQVLRG 448
L P+ D E + P P+ GS G + C +L+
Sbjct: 974 AAPILETPISPPPEANCTDPEPVPP---MILPPSPGSPVGPASPILMEPLPPQCSPLLQH 1030
Query: 449 GVIQSTRRRRRASQEANLLTLAQKAVELASLQNAKDGSGSEEKRKSVLASTTKCGVEFSE 508
++ + S A L++ + + D + E ++ S +C E
Sbjct: 1031 SLVPQNSPPSQCSPPALPLSVPSPLSPIGKVVGVSDEAELHE-METEKVSEPECPA--LE 1087
Query: 509 PSLATKRAREDSGMVPLIIPVSVPVRTVDP-----TEAAQAGGLDEDGKGPE--QNP--- 558
PS + S M L P P +D + A G+D G PE Q P
Sbjct: 1088 PSATSPL---PSPMGDLSCPAPSPAPALDDFSGLGEDTAPLDGIDAPGSQPEPGQTPGSL 1144
Query: 559 -AEHKPSVIVTRRRSTRIPGTDAQAQAEDMNVKLEGEPSVRKPKQRPRPEPLIIPTKAGT 617
+E K S ++ P T + E +G P +++ P + PT T
Sbjct: 1145 ASELKGSPVLLDPEEL-APVTPMEVYPECKQTAGQGSPC----EEQEEPRAPVAPTPP-T 1198
Query: 618 FIAPPVYSNITPYQSHLRSPVRLADHPSERSFELPPYTPPPILSPVREGSG-LYFNAIIS 676
I + + I+ L+ + SF P + P + SP EG G L +S
Sbjct: 1199 LIKSDIVNEIS----------NLSQGDASASF---PGSEPLLGSPDPEGGGSLSMELGVS 1245
Query: 677 TSTIPA 682
T PA
Sbjct: 1246 TDVSPA 1251
Score = 35.4 bits (80), Expect = 0.28
Identities = 71/272 (26%), Positives = 88/272 (32%), Gaps = 67/272 (24%)
Query: 147 GSPHPGVGVPTYYNHPEALKREKAG-------GPQLDRYVRPMMPQKVQLEVGRPQAPLN 199
GS VP P ++ G GPQ +PM+ + +Q G PQ P
Sbjct: 4122 GSSSEASSVPHLLAQPSVSLGDQPGSMTQNLLGPQ-----QPMLERPMQNNTG-PQPP-- 4173
Query: 200 SFHAAKKP-----PNQSLPLQPFQLAFGHQVNRQVFRQGPPPPNPVAAF--PPQKQQQQQ 252
KP Q LP G Q+ Q+ QG NP P Q+QQ Q
Sbjct: 4174 ------KPGPVLQSGQGLPGVGIMPTVG-QLRAQL--QGVLAKNPQLRHLSPQQQQQLQA 4224
Query: 253 QPQQQQQQQQAALPQMPLFENFYSMPQQPSQQPQD----FGLQP---------AGPLGQS 299
Q+Q QQ A+ Q P + Q+P Q G QP GPL +
Sbjct: 4225 LLMQRQLQQSQAVRQTPPY-------QEPGTQTSPLQGLLGCQPQLGGFPGPQTGPLQEL 4277
Query: 300 HLAHHSMAPYPFPPNP---DMNPELRKALLQDSAPQPALPQVQIPFPRRSRRLSKEGILP 356
P P P P L P P+ P S +L E LP
Sbjct: 4278 GAGPRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPSSQLPTEAQLP 4337
Query: 357 PSALDGAGTQPGQEATGNLFLHHWPLQQPPPG 388
P T PG P +PPPG
Sbjct: 4338 P-------THPGTPKP------QGPTLEPPPG 4356
Score = 33.9 bits (76), Expect = 0.82
Identities = 35/116 (30%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 329 SAPQPALPQVQIPFPRRSRRLSK--EGILPPSALDGAGTQPGQEATGNLFLHHWPLQQPP 386
S P A P + I P LS +G L P A G+ PG ++ G LFL P Q P
Sbjct: 2115 SPPPAAAPTIFIGSPTTPAGLSTSADGFLKPPA----GSVPGPDSPGELFL-KLPPQVPA 2169
Query: 387 PGSLGQPHPEALGFPLELRESQLLPDGERL-APNGREREAPAMGSEEGMRAVSTGD 441
P A +PLE R P +P G + P +G+ A G+
Sbjct: 2170 QVPSQDPFGLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRPGAGQPGE 2225
Score = 31.6 bits (70), Expect = 4.1
Identities = 37/95 (38%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 246 QKQQQ---QQQP--QQQQQQQQAALPQMPLFENFYSMPQQPSQQPQDFGLQPAGPLGQSH 300
QK+QQ Q QP QQQQQQQQ +L P S+P + S P G Q LG
Sbjct: 3261 QKKQQLSAQLQPAQQQQQQQQQHSLLSAPGPAQAMSLPHEGS-SPSLAGSQQQLSLG--- 3316
Query: 301 LAHHSMAPYPFPPNPDMNPELRKALLQDSAPQPAL 335
LA P P P P AL Q AP A+
Sbjct: 3317 LAGARQPGLPQPLMPTQPP--AHALQQRLAPSMAM 3349
>gi|209977084 REST corepressor 3 isoform c [Homo sapiens]
Length = 449
Score = 51.6 bits (122), Expect = 4e-06
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 723 INVGSRFQAEIPLMRDRALAAADPHKAD-LVWQPWEDLESSREKQRQVEDLLTAACSSIF 781
+ VG+ +QA IP A D LVW P+ + ++ +++ + A
Sbjct: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAK-----LDEYIAIAKEK-- 111
Query: 782 PGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLF 841
G N E AL L + +I ++L L P+ P D+W + ++ LF
Sbjct: 112 --HGYNVEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKVLF 155
Query: 842 NKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
+ + + K F +Q+++ KT+A V++YY++KK
Sbjct: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
Score = 34.3 bits (77), Expect = 0.63
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 832 QWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKI 880
+W E+ L +G+ Y KDF + +I KTV Q F+ Y+++ +
Sbjct: 347 RWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNL 395
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 51.6 bits (122), Expect = 4e-06
Identities = 39/155 (25%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 723 INVGSRFQAEIPLMRDRALAAADPHKAD-LVWQPWEDLESSREKQRQVEDLLTAACSSIF 781
+ VG+ +QA IP A D LVW P+ + ++ +++ + A
Sbjct: 59 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAK-----LDEYIAIAKEK-- 111
Query: 782 PGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLF 841
G N E AL L + +I ++L L P+ P D+W + ++ LF
Sbjct: 112 --HGYNVEQALGMLFWHKHNIEKSLADL-------PNFTPFP-------DEWTVEDKVLF 155
Query: 842 NKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKK 876
+ + + K F +Q+++ KT+A V++YY++KK
Sbjct: 156 EQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKK 190
Score = 34.7 bits (78), Expect = 0.48
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 832 QWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKI--------GRN 883
+W E+ L +G+ Y KDF + +I KTV Q F+ Y+++ +
Sbjct: 347 RWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQ 406
Query: 884 GT-LTFGDVDTSDE-----------KSAQEEVEVDIKTSQKFPRVPLPRRESPS 925
GT + GD T E KS EE E + + PR P +PS
Sbjct: 407 GTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQ---TPQAPRTLGPSPPAPS 457
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,235,038
Number of Sequences: 37866
Number of extensions: 3239187
Number of successful extensions: 28845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 770
Number of HSP's that attempted gapping in prelim test: 17014
Number of HSP's gapped (non-prelim): 6893
length of query: 1045
length of database: 18,247,518
effective HSP length: 113
effective length of query: 932
effective length of database: 13,968,660
effective search space: 13018791120
effective search space used: 13018791120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.