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Search of human proteins with 42558250
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42558250 membrane component chromosome 11 surface marker 1
isoform 1 [Homo sapiens]
(709 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42558250 membrane component chromosome 11 surface marker 1 is... 1427 0.0
gi|42734503 membrane component chromosome 11 surface marker 1 is... 1383 0.0
gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens] 222 1e-57
gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens] 222 1e-57
gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens] 179 6e-45
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 49 2e-05
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 48 4e-05
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 48 4e-05
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 47 5e-05
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 47 6e-05
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 47 8e-05
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 45 3e-04
gi|150170670 piccolo isoform 2 [Homo sapiens] 45 3e-04
gi|150378539 piccolo isoform 1 [Homo sapiens] 45 3e-04
gi|112382226 atrophin-1 like protein isoform b [Homo sapiens] 45 3e-04
gi|112382224 atrophin-1 like protein isoform a [Homo sapiens] 45 3e-04
gi|112382216 atrophin-1 like protein isoform a [Homo sapiens] 45 3e-04
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 44 4e-04
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 44 4e-04
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho... 44 5e-04
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom... 44 5e-04
gi|146134388 YLP motif containing 1 [Homo sapiens] 44 5e-04
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens] 44 7e-04
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens] 44 7e-04
gi|119943102 CREB binding protein isoform b [Homo sapiens] 43 9e-04
gi|119943104 CREB binding protein isoform a [Homo sapiens] 43 9e-04
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 43 9e-04
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 43 9e-04
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 43 9e-04
gi|118498356 kinectin 1 isoform a [Homo sapiens] 43 0.001
>gi|42558250 membrane component chromosome 11 surface marker 1
isoform 1 [Homo sapiens]
Length = 709
Score = 1427 bits (3693), Expect = 0.0
Identities = 709/709 (100%), Positives = 709/709 (100%)
Query: 1 MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV 60
MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV
Sbjct: 1 MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV 60
Query: 61 IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS 120
IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS
Sbjct: 61 IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS 120
Query: 121 QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE 180
QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE
Sbjct: 121 QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE 180
Query: 181 EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV 240
EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV
Sbjct: 181 EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV 240
Query: 241 FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM 300
FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM
Sbjct: 241 FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM 300
Query: 301 AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ 360
AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ
Sbjct: 301 AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ 360
Query: 361 DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP 420
DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP
Sbjct: 361 DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP 420
Query: 421 NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA 480
NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA
Sbjct: 421 NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA 480
Query: 481 SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ 540
SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ
Sbjct: 481 SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ 540
Query: 541 YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS 600
YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS
Sbjct: 541 YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS 600
Query: 601 NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR
Sbjct: 601 NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
Query: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQMNTQQVN 709
DYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQMNTQQVN
Sbjct: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQMNTQQVN 709
>gi|42734503 membrane component chromosome 11 surface marker 1
isoform 2 [Homo sapiens]
Length = 694
Score = 1383 bits (3580), Expect = 0.0
Identities = 689/689 (100%), Positives = 689/689 (100%)
Query: 1 MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV 60
MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV
Sbjct: 1 MPSATSHSGSGSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILGV 60
Query: 61 IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS 120
IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS
Sbjct: 61 IDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALS 120
Query: 121 QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE 180
QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE
Sbjct: 121 QDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSE 180
Query: 181 EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV 240
EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV
Sbjct: 181 EELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERV 240
Query: 241 FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM 300
FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM
Sbjct: 241 FQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFM 300
Query: 301 AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ 360
AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ
Sbjct: 301 AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ 360
Query: 361 DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP 420
DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP
Sbjct: 361 DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP 420
Query: 421 NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA 480
NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA
Sbjct: 421 NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTA 480
Query: 481 SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ 540
SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ
Sbjct: 481 SSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQ 540
Query: 541 YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS 600
YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS
Sbjct: 541 YQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRS 600
Query: 601 NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR
Sbjct: 601 NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
Query: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRG 689
DYSGYQRDGYQQNFKRGSGQSGPRGAPRG
Sbjct: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRG 689
>gi|50428933 C1q domain containing 1 isoform 1 [Homo sapiens]
Length = 1127
Score = 222 bits (565), Expect = 1e-57
Identities = 162/524 (30%), Positives = 244/524 (46%), Gaps = 41/524 (7%)
Query: 2 PSATSHSGSGSKSS--GPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILG 59
PSA+S S SS G PSG S E +A P H G ++ L
Sbjct: 50 PSASSVSMVQLFSSPFGYQSPSGHSEEEREGNMKSAKPQVNHSQHGESQRALSPLQSTLS 109
Query: 60 ------------------VIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQE 101
+ K+RN+EKKK KL+DY++R+ GE LN DQL+AV KY+E
Sbjct: 110 SAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLKSGEHLNPDQLEAVEKYEE 169
Query: 102 VTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGD 161
V +NLEFAKELQ++F LS D+ K KK RRE +++ EAE+K+L+T+L++QYVL L
Sbjct: 170 VLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQYVLQNLTQ 229
Query: 162 DEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGK 221
+ V+ D K GLNG L +EL L +F KL PER+ SL + +Q E +S++ WDLLEG
Sbjct: 230 EHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGS 289
Query: 222 EKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAE 281
EK V GTTYK LK+++ ++ S YF+S +N +E+E P E+ + ++E +
Sbjct: 290 EKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN--AKEKE---VPLEEEMLIQSEKKTQL 344
Query: 282 EYTE------------QSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVNSLQQ 329
TE Q E++ E++NR++M E +++ + E+ W + N ++
Sbjct: 345 SKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEE-QPWEADYARKPNLPKR 403
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
P E + + Q V ++ + I
Sbjct: 404 WDMLTEPDGQEKKQ-ESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEI 462
Query: 390 VSAQPMNPTQNMDMPQLVCPPVHSESRLAQ-PNQVPVQPEATQVPLVSSTSEGYTASQPL 448
++P D P+ V E + + P PVQ + Q P T + +T S
Sbjct: 463 SKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDP-KKQTPKSWTPSMQS 521
Query: 449 YQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQV 492
Q + + P E D Q + + S SQ Q+
Sbjct: 522 EQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQI 565
Score = 180 bits (457), Expect = 4e-45
Identities = 149/448 (33%), Positives = 218/448 (48%), Gaps = 62/448 (13%)
Query: 264 SAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEV 323
+ P E+Q +PE + + ++ VES ++ TS + W V T +
Sbjct: 530 TTPMCEEQ-DSKQPETPKSW--ENNVESQKH---------SLTSQSQISPKSWGVATASL 577
Query: 324 V-------NSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
+ L +P+ V +P + DP++R++++QDLM Q+QG NF+Q+S
Sbjct: 578 IPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQES 637
Query: 377 MLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQP-EATQVPLV 435
+LDF+ + AI ++QP + T P E L+ + +P +AT P+
Sbjct: 638 VLDFDKPS--SAIPTSQPPSATPGS-------PVASKEQNLSSQSDFLQEPLQATSSPVT 688
Query: 436 SSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLP--AASQPQVF 493
S++ + S TE + P +A I ++ +S P A Q F
Sbjct: 689 CSSNACLVTTDQASSGSE-TEFMTSETP----EAAIPPGKQPSSLASPNPPMAKGSEQGF 743
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSS-- 551
Q S P SS + +N APFQ+MQTVFN+NAP+PP E E +++ Y YNQSF++
Sbjct: 744 Q---SPPASSSSVTINTAPFQAMQTVFNVNAPLPPRKEQEI--KESPYSPGYNQSFTTAS 798
Query: 552 --QPHQVEQTELQQEQL---QTVVGTYHGSPDQSHQVT-GNHQQPPQQNTGFPRSNQPYY 605
P Q + + EQ Q YH PD + QV+ G+ P Q FPR QP+
Sbjct: 799 TQTPPQCQLPSIHVEQTVHSQETAANYH--PDGTIQVSNGSLAFYPAQTNVFPRPTQPFV 856
Query: 606 NSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYR--PSFSNTPNSGYTQSQFSAPRDYS 663
NSRG RG +RG R + N YR P G++ G+D YR PS S N Y+Q QF A R+YS
Sbjct: 857 NSRGSVRGCTRGGRLITNSYRSP-GGYK-GFDTYRGLPSIS---NGNYSQLQFQA-REYS 910
Query: 664 G---YQRDGYQQNFKRGSGQSGPRGAPR 688
G QRD +QQ +KRG GPR R
Sbjct: 911 GAPYSQRDNFQQCYKRGGTSGGPRANSR 938
>gi|23503235 C1q domain containing 1 isoform 2 [Homo sapiens]
Length = 1077
Score = 222 bits (565), Expect = 1e-57
Identities = 162/524 (30%), Positives = 244/524 (46%), Gaps = 41/524 (7%)
Query: 2 PSATSHSGSGSKSS--GPPPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQILG 59
PSA+S S SS G PSG S E +A P H G ++ L
Sbjct: 50 PSASSVSMVQLFSSPFGYQSPSGHSEEEREGNMKSAKPQVNHSQHGESQRALSPLQSTLS 109
Query: 60 ------------------VIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQE 101
+ K+RN+EKKK KL+DY++R+ GE LN DQL+AV KY+E
Sbjct: 110 SAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLKSGEHLNPDQLEAVEKYEE 169
Query: 102 VTNNLEFAKELQRSFMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGD 161
V +NLEFAKELQ++F LS D+ K KK RRE +++ EAE+K+L+T+L++QYVL L
Sbjct: 170 VLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQYVLQNLTQ 229
Query: 162 DEVRTDLKQGLNGVPILSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGK 221
+ V+ D K GLNG L +EL L +F KL PER+ SL + +Q E +S++ WDLLEG
Sbjct: 230 EHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGS 289
Query: 222 EKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPEPAE 281
EK V GTTYK LK+++ ++ S YF+S +N +E+E P E+ + ++E +
Sbjct: 290 EKAVVGTTYKHLKDLLSKLLNSGYFESIPVPKN--AKEKE---VPLEEEMLIQSEKKTQL 344
Query: 282 EYTE------------QSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVNSLQQ 329
TE Q E++ E++NR++M E +++ + E+ W + N ++
Sbjct: 345 SKTESVKESESLMEFAQPEIQPQEFLNRRYMTEVDYSNKQGEE-QPWEADYARKPNLPKR 403
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
P E + + Q V ++ + I
Sbjct: 404 WDMLTEPDGQEKKQ-ESFKSWEASGKHQEVSKPAVSLEQRKQDTSKLRSTLPEEQKKQEI 462
Query: 390 VSAQPMNPTQNMDMPQLVCPPVHSESRLAQ-PNQVPVQPEATQVPLVSSTSEGYTASQPL 448
++P D P+ V E + + P PVQ + Q P T + +T S
Sbjct: 463 SKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQLQKEQDP-KKQTPKSWTPSMQS 521
Query: 449 YQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQV 492
Q + + P E D Q + + S SQ Q+
Sbjct: 522 EQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQI 565
Score = 142 bits (359), Expect = 8e-34
Identities = 132/444 (29%), Positives = 197/444 (44%), Gaps = 104/444 (23%)
Query: 264 SAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEV 323
+ P E+Q +PE + + ++ VES ++ TS + W V T +
Sbjct: 530 TTPMCEEQ-DSKQPETPKSW--ENNVESQKH---------SLTSQSQISPKSWGVATASL 577
Query: 324 V-------NSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
+ L +P+ V +P + DP++R++++QDLM Q+QG NF+Q+S
Sbjct: 578 IPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQES 637
Query: 377 MLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVS 436
+LDF+ + AI ++QP P+ P P A++ +S
Sbjct: 638 VLDFDKPS--SAIPTSQP-------------------------PSATPGSPVASKEQNLS 670
Query: 437 STSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAG 496
S S+ L +P AT P+ + TDQ ++ S
Sbjct: 671 SQSDF------LQEPLQATSS-----PVTCSSNACLVTTDQASSGSE------------- 706
Query: 497 TSKPLHSSGINVNAAPFQSMQT--VFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQ-- 552
F + +T VFN+NAP+PP E E +++ Y YNQSF++
Sbjct: 707 --------------TEFMTSETPEVFNVNAPLPPRKEQEI--KESPYSPGYNQSFTTAST 750
Query: 553 --PHQVEQTELQQEQLQTVVGTYHGSPDQSHQVT-GNHQQPPQQNTGFPRSNQPYYNSRG 609
P Q + + EQ T + PD + QV+ G+ P Q FPR QP+ NSRG
Sbjct: 751 QTPPQCQLPSIHVEQTVHSQETANYHPDGTIQVSNGSLAFYPAQTNVFPRPTQPFVNSRG 810
Query: 610 VSRGGSRGARGLMNGYRGPANGFRGGYDGYR--PSFSNTPNSGYTQSQFSAPRDYSG--- 664
RG +RG R + N YR P G++ G+D YR PS S N Y+Q QF A R+YSG
Sbjct: 811 SVRGCTRGGRLITNSYRSP-GGYK-GFDTYRGLPSIS---NGNYSQLQFQA-REYSGAPY 864
Query: 665 YQRDGYQQNFKRGSGQSGPRGAPR 688
QRD +QQ +KRG GPR R
Sbjct: 865 SQRDNFQQCYKRGGTSGGPRANSR 888
>gi|50428931 C1q domain containing 1 isoform 3 [Homo sapiens]
Length = 793
Score = 179 bits (455), Expect = 6e-45
Identities = 147/445 (33%), Positives = 217/445 (48%), Gaps = 57/445 (12%)
Query: 264 SAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEV 323
+ P E+Q +PE + + ++ VES ++ TS + W V T +
Sbjct: 197 TTPMCEEQ-DSKQPETPKSW--ENNVESQKH---------SLTSQSQISPKSWGVATASL 244
Query: 324 V-------NSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
+ L +P+ V +P + DP++R++++QDLM Q+QG NF+Q+S
Sbjct: 245 IPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQES 304
Query: 377 MLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQP-EATQVPLV 435
+LDF+ + AI ++QP + T P E L+ + +P +AT P+
Sbjct: 305 VLDFDKPS--SAIPTSQPPSATPGS-------PVASKEQNLSSQSDFLQEPLQATSSPVT 355
Query: 436 SSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLP--AASQPQVF 493
S++ + S TE + P +A I ++ +S P A Q F
Sbjct: 356 CSSNACLVTTDQASSGSE-TEFMTSETP----EAAIPPGKQPSSLASPNPPMAKGSEQGF 410
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSS-- 551
Q S P SS + +N APFQ+MQTVFN+NAP+PP E E +++ Y YNQSF++
Sbjct: 411 Q---SPPASSSSVTINTAPFQAMQTVFNVNAPLPPRKEQEI--KESPYSPGYNQSFTTAS 465
Query: 552 --QPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVT-GNHQQPPQQNTGFPRSNQPYYNSR 608
P Q + + EQ T + PD + QV+ G+ P Q FPR QP+ NSR
Sbjct: 466 TQTPPQCQLPSIHVEQTVHSQETANYHPDGTIQVSNGSLAFYPAQTNVFPRPTQPFVNSR 525
Query: 609 GVSRGGSRGARGLMNGYRGPANGFRGGYDGYR--PSFSNTPNSGYTQSQFSAPRDYSG-- 664
G RG +RG R + N YR P G++ G+D YR PS S N Y+Q QF A R+YSG
Sbjct: 526 GSVRGCTRGGRLITNSYRSP-GGYK-GFDTYRGLPSIS---NGNYSQLQFQA-REYSGAP 579
Query: 665 -YQRDGYQQNFKRGSGQSGPRGAPR 688
QRD +QQ +KRG GPR R
Sbjct: 580 YSQRDNFQQCYKRGGTSGGPRANSR 604
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 48.5 bits (114), Expect = 2e-05
Identities = 64/250 (25%), Positives = 83/250 (33%), Gaps = 26/250 (10%)
Query: 450 QPSHATEQRPQKEPIDQIQATISLNTDQTT-ASSSLPAASQPQVFQAGTSKPLHSSGINV 508
QP Q+ + Q + S +TD + SS + Q Q GT G
Sbjct: 20 QPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQSTPQGYGSTG 79
Query: 509 NAAPFQSMQTVFNMNAPVPPVNE-PETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQ 567
QS Q+ + + P + P Y +S S QP
Sbjct: 80 GYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQS------------ 127
Query: 568 TVVGTYHGSPDQSHQVTGNHQQ----PPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLMN 623
G+Y P Q QQ PPQ G+ + NQ +S G GG G G
Sbjct: 128 ---GSYSQQPSYGGQQQSYGQQQSYNPPQ---GYGQQNQYNSSSGGGGGGGGGGNYGQDQ 181
Query: 624 GYRGPANGFRGGYDGYRPSFSNTPNSGY-TQSQFSAPRDYSGYQRDGYQQNFKRGSGQSG 682
G GGY G + + GY Q + R SG G + R SG
Sbjct: 182 SSMSSGGGSGGGY-GNQDQSGGGGSGGYGQQDRGGRGRGGSGGGGGGGGGGYNRSSGGYE 240
Query: 683 PRGAPRGRGG 692
PRG GRGG
Sbjct: 241 PRGRGGGRGG 250
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 47.8 bits (112), Expect = 4e-05
Identities = 102/476 (21%), Positives = 172/476 (36%), Gaps = 81/476 (17%)
Query: 64 KLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDI 123
++ +++K KGK D E + L +D + V+ QE+ + + ++ +D
Sbjct: 505 RIEDIKKLKGKYKD-NEAIEFSFDLERDVPEDVA--QEMVESGYVCEGDHKTMAKAIKDR 561
Query: 124 QKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSEEEL 183
IK+ + QL+REE E+K+ + Q V L G+P S
Sbjct: 562 VSLIKRKREQRQLVREEQEKKKQEESSLKQQVEQSSASQTGIKQLPSASTGIPTASTTSA 621
Query: 184 SLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERVFQS 243
S+ + + +PE D +L QY+ SI + L +G G++ VF
Sbjct: 622 SVSTQ-VEPEEPEADQHQQL--QYQQPSISV--LSDGTVDSGQGSS----------VFTE 666
Query: 244 NYFDSTHNHQNGLCEEEEAASAPAVEDQVP---EAEPEPAEEYTEQSEVESTEYVNRQFM 300
+ S G + E+A S V +P +A+ +P Y S
Sbjct: 667 SRVSSQQTVSYG-SQHEQAHSTGTVPGHIPSTVQAQSQPHGVYPPSSVA----------- 714
Query: 301 AETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQ 360
Q S P SLT V+ + P+ Q+ Q
Sbjct: 715 -------------------------------QGQSQGQPSSSSLTGVSSSQPIQHPQQQQ 743
Query: 361 DLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQP 420
+ Q P +Q S+ + +AQP++ Q PQ V P V + +L
Sbjct: 744 GIQ-QTAPPQQTVQYSL---SQTSTSSEATTAQPVSQPQ---APQ-VLPQVSAGKQLPVS 795
Query: 421 NQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRP--QKEPIDQIQATISLNTDQT 478
VP Q+P+ + S S + P P + P+ QI + +
Sbjct: 796 QPVPTIQGEPQIPVATQPSVVPVHSGAHFLPVGQPLPTPLLPQYPVSQIPISTPHVSTAQ 855
Query: 479 TASSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPET 534
T SSLP AG ++PL + + A + TV + + +P + +P T
Sbjct: 856 TGFSSLPI-----TMAAGITQPLLTLASSATTAAIPGVSTV--VPSQLPTLLQPVT 904
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 47.8 bits (112), Expect = 4e-05
Identities = 71/295 (24%), Positives = 103/295 (34%), Gaps = 62/295 (21%)
Query: 323 VVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLD--- 379
V N P A P P P P +Q P R R+ + F + SM
Sbjct: 2194 VTNQRHSDPYAHPPGTPRPGISVPYSQP-PATPRPRISE---------GFTRSSMTRPVL 2243
Query: 380 FENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTS 439
NQ DP + +AQ P +P + P + S+ +P
Sbjct: 2244 MPNQ--DPFLQAAQNRGPA----LPGPLVRPPDTCSQTPRP-----------------PG 2280
Query: 440 EGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQT-TASSSLPAASQPQV-----F 493
G + + PS A ++P DQ T +D T+ ++ A QP+ F
Sbjct: 2281 PGLSDTFSRVSPSAA------RDPYDQSPMTPRSQSDSFGTSQTAHDVADQPRPGSEGSF 2334
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQP 553
A ++ P+HS G Q V + PVP +T N QA + Q
Sbjct: 2335 CASSNSPMHSQG--------QQFSGVSQLPGPVPTSGVTDTQNTVNMAQADTEKL--RQR 2384
Query: 554 HQVEQTELQQEQLQTVVGTYH----GSPDQSHQVTGNHQQPPQQNTGFPRSNQPY 604
++ + LQQ+Q + + G SP H H QP N F R PY
Sbjct: 2385 QKLREIILQQQQQKKIAGRQEKGSQDSPAVPHPGPLQHWQPENVNQAFTRPPPPY 2439
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 47.4 bits (111), Expect = 5e-05
Identities = 67/258 (25%), Positives = 91/258 (35%), Gaps = 51/258 (19%)
Query: 498 SKPLHSSGINVNAAPFQSMQTVFNMNAPVP---PVNEPE------TLKQQNQYQAS---- 544
S + S G+ P MQ N P P P+ P T N +S
Sbjct: 101 SHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSM 160
Query: 545 --YNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGN---HQQPPQQNTGFPR 599
YN S S Q ++ Q Q + G Y P+ S Q HQQPP Q P+
Sbjct: 161 GGYNHSVPSSQSMPVQNQMTMSQGQPM-GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
Query: 600 SNQPYYNSR--------GVSRGGSRGARGLMNGYR----GPANGFRGGYDGYRPSFSN-- 645
+Y + V++G + + YR GP + G D Y +S+
Sbjct: 220 GGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG 279
Query: 646 -TPNSGYTQSQFSAPRDYSGYQRDGY-----QQNF----KRGSGQSGPRGAPRGRG---- 691
P G Q + G Q+D Y QQ + ++ GQ G G +G G
Sbjct: 280 QGPPEGMNQQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQG 339
Query: 692 --GPPRPNRGMPQMNTQQ 707
GP PN PQ QQ
Sbjct: 340 GPGPQYPN--YPQGQGQQ 355
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 47.0 bits (110), Expect = 6e-05
Identities = 113/598 (18%), Positives = 192/598 (32%), Gaps = 72/598 (12%)
Query: 18 PPPSGSSGSEAAAGAGAAAPASQHPATGTGAVQTEAMKQI---LGVIDKKLRNLEKKKGK 74
PP S S S++++ + ++ S+ A E +K + L + + +N KKK K
Sbjct: 482 PPSSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEK 541
Query: 75 LDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQDIQKTIKKTARRE 134
D +++ K +R + + + SK +E S ++ + K E
Sbjct: 542 -DKKEKKKEKHKRKEEVEENKKSKAKEPPPKKTKKNNSSNSNVSKKEPAPMKSKPPPTYE 600
Query: 135 QLMREEAEQKRLKTVLELQYVLDKLGDDEVRTDLKQGLNGVPILSEEELSLLDEFYKLVD 194
++ + + +L ++KL +++ + + P L ++ ++ +
Sbjct: 601 SEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLK 660
Query: 195 PERDMSLRLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQN 254
P +LR E+Y + L K KP + + F S+ +S+ +
Sbjct: 661 PS---TLRELERY------VTSCLRKKRKPQAEKVDVIAGSSKMKGFSSSESESSSESSS 711
Query: 255 GLCEEEEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVD 314
E+ E AP + + + + +++
Sbjct: 712 SDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQMQQAP--------------------- 750
Query: 315 EWTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQ 374
V PQ P P P P Q+ M P+ Q
Sbjct: 751 ------APVPQQPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSPPPFIATQ 804
Query: 375 DSMLD--FENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQV 432
+L+ DP QP+ + +PQ PP L QP + P Q
Sbjct: 805 VPVLEPQLPGSVFDPIGHFTQPI-----LHLPQPELPP-----HLPQPPEHSTPPHLNQH 854
Query: 433 PLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQV 492
+VS + Q +PS+ P P +S QT P A PQV
Sbjct: 855 AVVSPPALHNALPQQPSRPSNRAAALP---PKPARPPAVSPALTQTPLLPQPPMAQPPQV 911
Query: 493 FQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQ 552
P A P SMQ + + V P L + Q+
Sbjct: 912 LLEDEEPP---------APPLTSMQMQLYLQ-QLQKVQPPTPLLPSVKVQSQPPPPLPPP 961
Query: 553 PHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGN--HQQPPQQNTGF-----PRSNQP 603
PH Q +LQQ+ P Q HQ H QP Q +T P+ QP
Sbjct: 962 PHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRPVHLQPMQFSTHIQQPPPPQGQQP 1019
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 46.6 bits (109), Expect = 8e-05
Identities = 75/346 (21%), Positives = 135/346 (39%), Gaps = 70/346 (20%)
Query: 69 EKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNL--------EFAKELQRSFMALS 120
+K + +L + Q + N+GER+ + D V+K Q +N+ + +L + F AL
Sbjct: 1248 KKVEAQLQELQVKFNEGERVRTELADKVTKLQVELDNVTGLLSQSDSKSSKLTKDFSALE 1307
Query: 121 QDIQKT----------------------IKKTARREQLMREEAEQKRLKTVL-----ELQ 153
+Q T +K + REQL EE + L+ + ++
Sbjct: 1308 SQLQDTQELLQEENRQKLSLSTKLKQVEDEKNSFREQLEEEEEAKHNLEKQIATLHAQVA 1367
Query: 154 YVLDKLGD--------DEVRTDLKQGLNGVPILSEEELSLLDEFYK----LVDPERDMSL 201
+ K+ D +EV+ L++ L G+ EE+++ D+ K L D+ +
Sbjct: 1368 DMKKKMEDSVGCLETAEEVKRKLQKDLEGLSQRHEEKVAAYDKLEKTKTRLQQELDDLLV 1427
Query: 202 RLNEQYEHASIHLWDLLEGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEE 261
L+ Q + A LE K+K ++L E E+ + Y EE +
Sbjct: 1428 DLDHQRQSAC-----NLEKKQKKF----DQLLAE--EKTISAKY-----------AEERD 1465
Query: 262 AASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETV 321
A A A E + A E + + E E +N+QF E + K+ V + E
Sbjct: 1466 RAEAEAREKETKALSLARALEEAMEQKAE-LERLNKQFRTEMEDLMSSKDDVGKSVHELE 1524
Query: 322 EVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQ 367
+ +L+QQ + + E + L +Q + AQ +
Sbjct: 1525 KSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNLQAMKAQFE 1570
Score = 41.2 bits (95), Expect = 0.003
Identities = 61/272 (22%), Positives = 114/272 (41%), Gaps = 32/272 (11%)
Query: 62 DKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRSFMALSQ 121
+ KL+ LE+++ L+D ++ K ++L +D++ E T NL +E +S L
Sbjct: 970 EAKLKKLEEEQIILEDQNCKLAKEKKLLEDRI------AEFTTNLTEEEEKSKSLAKLKN 1023
Query: 122 DIQKTI---KKTARREQLMREEAEQKRLKTVLELQYVLDKLGDDEVR-TDLKQGLNGVPI 177
+ I ++ RRE+ R+E E+ R K + + D++ + + + +LK L
Sbjct: 1024 KHEAMITDLEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQL----A 1079
Query: 178 LSEEELSLLDEFYKLVDPERDMSLRLNEQYEHASIHLWDLLEG---------KEKPVCGT 228
EEEL + +++M+L+ + E L + LE K+K G
Sbjct: 1080 KKEEELQAALARVEEEAAQKNMALKKIRELESQISELQEDLESERASRNKAEKQKRDLGE 1139
Query: 229 TYKVLKEIVERVFQS----NYFDSTHNHQNGLCE---EEEAASAPAVEDQVPEAEPEPAE 281
+ LK +E S S + + + EEEA + A ++ + + E
Sbjct: 1140 ELEALKTELEDTLDSTAAQQELRSKREQEVNILKKTLEEEAKTHEAQIQEMRQKHSQAVE 1199
Query: 282 EYTEQSEVESTEYVNRQFMAETQFTSGEKEQV 313
E EQ +E T+ V Q E+ ++
Sbjct: 1200 ELAEQ--LEQTKRVKANLEKAKQTLENERGEL 1229
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 44.7 bits (104), Expect = 3e-04
Identities = 59/249 (23%), Positives = 85/249 (34%), Gaps = 52/249 (20%)
Query: 498 SKPLHSSGINVNAAPFQSMQTVFNMNAPVP---PVNEPE------TLKQQNQYQAS---- 544
S + S G+ P MQ N P P P+ P T N +S
Sbjct: 101 SHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSM 160
Query: 545 --YNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGN---HQQPPQQNTGFPR 599
YN S S Q ++ Q Q + G Y P+ S Q HQQPP Q P+
Sbjct: 161 GGYNHSVPSSQSMPVQNQMTMSQGQPM-GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
Query: 600 SNQPYYNSR--------GVSRGGSRGARGLMNGYR----GPANGFRGGYDGYRPSFSN-- 645
+Y + V++G + + YR GP + G D Y +S+
Sbjct: 220 GGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG 279
Query: 646 -TPNSGYTQSQFSAPRDYSGYQRDGYQQ------------------NFKRGSGQSGPRGA 686
P G Q + + GYQ+ Y + N + G Q +G
Sbjct: 280 QGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGP 339
Query: 687 PRGRGGPPR 695
P +G PP+
Sbjct: 340 PPQQGYPPQ 348
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 44.7 bits (104), Expect = 3e-04
Identities = 71/293 (24%), Positives = 101/293 (34%), Gaps = 19/293 (6%)
Query: 329 QQPQAASPSVPEP-HSLTPVAQADPLVRRQRVQDLMAQMQGPYN--FIQDSMLDFENQTL 385
QQP P +P H + A P + + +AQ G Q L
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPL 366
Query: 386 DPAIVSAQPMN---PTQNMDMPQLVCPPVHSESRLAQ---PNQVPVQPEATQVPLVSSTS 439
PA AQ P+ P+ + P AQ P + P Q T PL
Sbjct: 367 GPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426
Query: 440 EGYTASQPLYQPSHATEQRPQKEPIDQIQA--TISLNTDQTTASSSLPAASQPQVFQAGT 497
A P + + P K P Q T + T T S LP ++P Q G
Sbjct: 427 LQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 498 SKPLHSSGINVNAAPFQSMQTVFNMNAP---VPPVNEPETLKQQNQYQASYNQSFSSQPH 554
+KP + Q T P P +P + K +Q S S + QP
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPS-AQQPS 545
Query: 555 QVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNS 607
+ + Q+ + V T G P Q V+ + +QPP Q G P++ P N+
Sbjct: 546 PAKPS--AQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQ--GLPKTICPLCNT 594
Score = 33.1 bits (74), Expect = 0.91
Identities = 58/246 (23%), Positives = 88/246 (35%), Gaps = 38/246 (15%)
Query: 273 PEAEP-EPAEEYTEQ--SEVESTEYVNRQFMAETQF---TSGEKEQVDEWTVETVEVVNS 326
P A+P PA+ +Q SE S+E + +A+ T ++ + + V
Sbjct: 361 PPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKP 420
Query: 327 LQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLD 386
L QQP SP+ + TPV Q P + AQ G
Sbjct: 421 LAQQPGLQSPAKAPGPTKTPVQQPGP-------GKIPAQQAG------------------ 455
Query: 387 PAIVSAQPMNPTQ-NMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTAS 445
P SAQ PT+ +P PP P P QP + + P S
Sbjct: 456 PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP---PQQPGSAKPPSQQPGSTKPPPQ 512
Query: 446 QPLYQPSHATEQRP-QKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSS 504
QP P+ + Q+P +P Q + + Q + + S V Q G+ KPL
Sbjct: 513 QP--GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPP 570
Query: 505 GINVNA 510
++ +A
Sbjct: 571 TVSPSA 576
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 413 SESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATIS 472
S S +P +P+ ++P+V+ SE + P+ QP R P+ I A
Sbjct: 4332 SSSARTKPTSLPISQSRGRIPIVAQNSEEESPLSPVGQPMGMA--RAAAGPLPPISAD-- 4387
Query: 473 LNTDQTTASSSLPAASQ 489
DQ +S SLP Q
Sbjct: 4388 -TRDQFGSSHSLPEVQQ 4403
Score = 30.0 bits (66), Expect = 7.7
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 13/217 (5%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQF----TSGEKEQVDE 315
++ APA E P+AE P + TE + ++ AE Q T EK E
Sbjct: 997 KKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEPQKAVLPTKLEKSPKPE 1056
Query: 316 WTVETVEV-VNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQ 374
T + +N + P + + + + +P +Q+ + I
Sbjct: 1057 STCPLCKTELNIGSKDPPNFNTCTECKNQVCNLCGFNPTPHLTEIQEWLCLNCQTQRAIS 1116
Query: 375 DSMLDFENQTLDPAIVSAQPMN-PTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVP 433
+ D P+ A PM PT++ V P V +L + + V+ EA +V
Sbjct: 1117 GQLGDIRKMPPAPSGPKASPMPVPTESSSQKTAVPPQV----KLVKKQEQEVKTEAEKV- 1171
Query: 434 LVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQAT 470
++ E T S P T+Q+ ++ +++ +A+
Sbjct: 1172 ILEKVKE--TLSMEKIPPMVTTDQKQEESKLEKDKAS 1206
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 44.7 bits (104), Expect = 3e-04
Identities = 71/293 (24%), Positives = 101/293 (34%), Gaps = 19/293 (6%)
Query: 329 QQPQAASPSVPEP-HSLTPVAQADPLVRRQRVQDLMAQMQGPYN--FIQDSMLDFENQTL 385
QQP P +P H + A P + + +AQ G Q L
Sbjct: 307 QQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPL 366
Query: 386 DPAIVSAQPMN---PTQNMDMPQLVCPPVHSESRLAQ---PNQVPVQPEATQVPLVSSTS 439
PA AQ P+ P+ + P AQ P + P Q T PL
Sbjct: 367 GPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPG 426
Query: 440 EGYTASQPLYQPSHATEQRPQKEPIDQIQA--TISLNTDQTTASSSLPAASQPQVFQAGT 497
A P + + P K P Q T + T T S LP ++P Q G
Sbjct: 427 LQSPAKAPGPTKTPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGP 486
Query: 498 SKPLHSSGINVNAAPFQSMQTVFNMNAP---VPPVNEPETLKQQNQYQASYNQSFSSQPH 554
+KP + Q T P P +P + K +Q S S + QP
Sbjct: 487 AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSAKPS-AQQPS 545
Query: 555 QVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNS 607
+ + Q+ + V T G P Q V+ + +QPP Q G P++ P N+
Sbjct: 546 PAKPS--AQQSTKPVSQTGSGKPLQPPTVSPSAKQPPSQ--GLPKTICPLCNT 594
Score = 33.1 bits (74), Expect = 0.91
Identities = 58/246 (23%), Positives = 88/246 (35%), Gaps = 38/246 (15%)
Query: 273 PEAEP-EPAEEYTEQ--SEVESTEYVNRQFMAETQF---TSGEKEQVDEWTVETVEVVNS 326
P A+P PA+ +Q SE S+E + +A+ T ++ + + V
Sbjct: 361 PPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPTQQVGTPKP 420
Query: 327 LQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLD 386
L QQP SP+ + TPV Q P + AQ G
Sbjct: 421 LAQQPGLQSPAKAPGPTKTPVQQPGP-------GKIPAQQAG------------------ 455
Query: 387 PAIVSAQPMNPTQ-NMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTAS 445
P SAQ PT+ +P PP P P QP + + P S
Sbjct: 456 PGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPP---PQQPGSAKPPSQQPGSTKPPPQ 512
Query: 446 QPLYQPSHATEQRP-QKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSS 504
QP P+ + Q+P +P Q + + Q + + S V Q G+ KPL
Sbjct: 513 QP--GPAKPSPQQPGSTKPPSQQPGSAKPSAQQPSPAKPSAQQSTKPVSQTGSGKPLQPP 570
Query: 505 GINVNA 510
++ +A
Sbjct: 571 TVSPSA 576
Score = 31.6 bits (70), Expect = 2.7
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 413 SESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATIS 472
S S +P +P+ ++P+V+ SE + P+ QP R P+ I A
Sbjct: 4332 SSSARTKPTSLPISQSRGRIPIVAQNSEEESPLSPVGQPMGMA--RAAAGPLPPISAD-- 4387
Query: 473 LNTDQTTASSSLPAASQ 489
DQ +S SLP Q
Sbjct: 4388 -TRDQFGSSHSLPEVQQ 4403
Score = 30.0 bits (66), Expect = 7.7
Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 13/217 (5%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQF----TSGEKEQVDE 315
++ APA E P+AE P + TE + ++ AE Q T EK E
Sbjct: 997 KKETKAPAAEKLEPKAEQAPTVKRTETEKKPPPIKDSKSLTAEPQKAVLPTKLEKSPKPE 1056
Query: 316 WTVETVEV-VNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQ 374
T + +N + P + + + + +P +Q+ + I
Sbjct: 1057 STCPLCKTELNIGSKDPPNFNTCTECKNQVCNLCGFNPTPHLTEIQEWLCLNCQTQRAIS 1116
Query: 375 DSMLDFENQTLDPAIVSAQPMN-PTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVP 433
+ D P+ A PM PT++ V P V +L + + V+ EA +V
Sbjct: 1117 GQLGDIRKMPPAPSGPKASPMPVPTESSSQKTAVPPQV----KLVKKQEQEVKTEAEKV- 1171
Query: 434 LVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQAT 470
++ E T S P T+Q+ ++ +++ +A+
Sbjct: 1172 ILEKVKE--TLSMEKIPPMVTTDQKQEESKLEKDKAS 1206
>gi|112382226 atrophin-1 like protein isoform b [Homo sapiens]
Length = 1012
Score = 44.7 bits (104), Expect = 3e-04
Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 36/272 (13%)
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
QPQA P+ P PH T + QA L ++ P+ +Q + Q P+
Sbjct: 233 QPQA--PTAPVPH--THIQQAPALHPQRPPSPHPPPHPSPHPPLQP-LTGSAGQPSAPS- 286
Query: 390 VSAQPMNPTQNMDMPQ-LVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQ-- 446
AQP Q P L P+ QP +P Q Q PL +S + Y +
Sbjct: 287 -HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 345
Query: 447 -PLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSSG 505
P Q + ++Q P+++P+ A +++ + ++ +P PQ + P H SG
Sbjct: 346 LPASQSALQSQQPPREQPLPP--APLAMPHIKPPPTTPIPQLPAPQAHK----HPPHLSG 399
Query: 506 -----INVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTE 560
+N N P +++ + +++ PP P L+ Q Q S +QP + Q++
Sbjct: 400 PSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPL--PSSPAQPPGLTQSQ 457
Query: 561 LQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQ 592
P SH TG HQ PQ
Sbjct: 458 NLPP------------PPASHPPTGLHQVAPQ 477
Score = 39.7 bits (91), Expect = 0.010
Identities = 77/317 (24%), Positives = 117/317 (36%), Gaps = 52/317 (16%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTS-GEKEQVDEWTV 318
+E AS+P ++ + E TE+++ S++ Q ++ S GE E D +V
Sbjct: 83 KEEASSPLKSNK---RQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSV 139
Query: 319 --ETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
E + Q ++ SPS+P P + +D ++Q +Q +Q P
Sbjct: 140 NDEGSSDPKDIDQDNRSTSPSIPSPQDNE--SDSDSSAQQQMLQAQPPALQAPTG----- 192
Query: 377 MLDFENQTLDPAIVSAQPMNP---TQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVP 433
+ PA SA P P T PP S + +Q P QP+A P
Sbjct: 193 --------VTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTA----SQAPNQPQAPTAP 240
Query: 434 LVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVF 493
+ + + A P PS P P Q + S P+ +QP
Sbjct: 241 VPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ-------PLTGSAGQPSAPSHAQP--- 290
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETL-KQQNQYQASYNQS-FSS 551
PLH G P S+Q + P PP +P L Q +Q QA S ++
Sbjct: 291 ------PLHGQG---PPGP-HSLQAGPLLQHPGPP--QPFGLPPQASQGQAPLGTSPAAA 338
Query: 552 QPHQVEQTELQQEQLQT 568
PH Q Q LQ+
Sbjct: 339 YPHTSLQLPASQSALQS 355
>gi|112382224 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 44.7 bits (104), Expect = 3e-04
Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 36/272 (13%)
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
QPQA P+ P PH T + QA L ++ P+ +Q + Q P+
Sbjct: 787 QPQA--PTAPVPH--THIQQAPALHPQRPPSPHPPPHPSPHPPLQP-LTGSAGQPSAPS- 840
Query: 390 VSAQPMNPTQNMDMPQ-LVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQ-- 446
AQP Q P L P+ QP +P Q Q PL +S + Y +
Sbjct: 841 -HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 899
Query: 447 -PLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSSG 505
P Q + ++Q P+++P+ A +++ + ++ +P PQ + P H SG
Sbjct: 900 LPASQSALQSQQPPREQPLPP--APLAMPHIKPPPTTPIPQLPAPQAHK----HPPHLSG 953
Query: 506 -----INVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTE 560
+N N P +++ + +++ PP P L+ Q Q S +QP + Q++
Sbjct: 954 PSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPL--PSSPAQPPGLTQSQ 1011
Query: 561 LQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQ 592
P SH TG HQ PQ
Sbjct: 1012 NLPP------------PPASHPPTGLHQVAPQ 1031
Score = 39.7 bits (91), Expect = 0.010
Identities = 77/317 (24%), Positives = 117/317 (36%), Gaps = 52/317 (16%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTS-GEKEQVDEWTV 318
+E AS+P ++ + E TE+++ S++ Q ++ S GE E D +V
Sbjct: 637 KEEASSPLKSNK---RQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSV 693
Query: 319 --ETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
E + Q ++ SPS+P P + +D ++Q +Q +Q P
Sbjct: 694 NDEGSSDPKDIDQDNRSTSPSIPSPQDNE--SDSDSSAQQQMLQAQPPALQAPTG----- 746
Query: 377 MLDFENQTLDPAIVSAQPMNP---TQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVP 433
+ PA SA P P T PP S + +Q P QP+A P
Sbjct: 747 --------VTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTA----SQAPNQPQAPTAP 794
Query: 434 LVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVF 493
+ + + A P PS P P Q + S P+ +QP
Sbjct: 795 VPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ-------PLTGSAGQPSAPSHAQP--- 844
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETL-KQQNQYQASYNQS-FSS 551
PLH G P S+Q + P PP +P L Q +Q QA S ++
Sbjct: 845 ------PLHGQG---PPGP-HSLQAGPLLQHPGPP--QPFGLPPQASQGQAPLGTSPAAA 892
Query: 552 QPHQVEQTELQQEQLQT 568
PH Q Q LQ+
Sbjct: 893 YPHTSLQLPASQSALQS 909
>gi|112382216 atrophin-1 like protein isoform a [Homo sapiens]
Length = 1566
Score = 44.7 bits (104), Expect = 3e-04
Identities = 67/272 (24%), Positives = 108/272 (39%), Gaps = 36/272 (13%)
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
QPQA P+ P PH T + QA L ++ P+ +Q + Q P+
Sbjct: 787 QPQA--PTAPVPH--THIQQAPALHPQRPPSPHPPPHPSPHPPLQP-LTGSAGQPSAPS- 840
Query: 390 VSAQPMNPTQNMDMPQ-LVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQ-- 446
AQP Q P L P+ QP +P Q Q PL +S + Y +
Sbjct: 841 -HAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 899
Query: 447 -PLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSSG 505
P Q + ++Q P+++P+ A +++ + ++ +P PQ + P H SG
Sbjct: 900 LPASQSALQSQQPPREQPLPP--APLAMPHIKPPPTTPIPQLPAPQAHK----HPPHLSG 953
Query: 506 -----INVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTE 560
+N N P +++ + +++ PP P L+ Q Q S +QP + Q++
Sbjct: 954 PSPFSMNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPL--PSSPAQPPGLTQSQ 1011
Query: 561 LQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQ 592
P SH TG HQ PQ
Sbjct: 1012 NLPP------------PPASHPPTGLHQVAPQ 1031
Score = 39.7 bits (91), Expect = 0.010
Identities = 77/317 (24%), Positives = 117/317 (36%), Gaps = 52/317 (16%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTS-GEKEQVDEWTV 318
+E AS+P ++ + E TE+++ S++ Q ++ S GE E D +V
Sbjct: 637 KEEASSPLKSNK---RQREKVASDTEEADRTSSKKTKTQEISRPNSPSEGEGESSDSRSV 693
Query: 319 --ETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDS 376
E + Q ++ SPS+P P + +D ++Q +Q +Q P
Sbjct: 694 NDEGSSDPKDIDQDNRSTSPSIPSPQDNE--SDSDSSAQQQMLQAQPPALQAPTG----- 746
Query: 377 MLDFENQTLDPAIVSAQPMNP---TQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVP 433
+ PA SA P P T PP S + +Q P QP+A P
Sbjct: 747 --------VTPAPSSAPPGTPQLPTPGPTPSATAVPPQGSPTA----SQAPNQPQAPTAP 794
Query: 434 LVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVF 493
+ + + A P PS P P Q + S P+ +QP
Sbjct: 795 VPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQ-------PLTGSAGQPSAPSHAQP--- 844
Query: 494 QAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETL-KQQNQYQASYNQS-FSS 551
PLH G P S+Q + P PP +P L Q +Q QA S ++
Sbjct: 845 ------PLHGQG---PPGP-HSLQAGPLLQHPGPP--QPFGLPPQASQGQAPLGTSPAAA 892
Query: 552 QPHQVEQTELQQEQLQT 568
PH Q Q LQ+
Sbjct: 893 YPHTSLQLPASQSALQS 909
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 44.3 bits (103), Expect = 4e-04
Identities = 96/390 (24%), Positives = 136/390 (34%), Gaps = 55/390 (14%)
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
QPQ +SP P P Q P+ + R MA MQ P Q + Q +
Sbjct: 480 QPQQSSP-YPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQ---QQMPPQYGQQGVSGYC 535
Query: 390 VSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGY-TASQPL 448
Q +Q P L PP Q +P Q + P + EGY T SQP
Sbjct: 536 QQGQQPYYSQQPQPPHL--PP--------QAQYLPSQSQQRYQPQQDMSQEGYGTRSQPP 585
Query: 449 YQPSHAT--------EQRPQKEP-----IDQI----QATISLNTDQTTASSSLPAASQPQ 491
P ++RP P ID + +AT+S + ++SS S P
Sbjct: 586 LAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPA 645
Query: 492 VFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSS 551
H S I +P V + + P++ Q Q +QS SS
Sbjct: 646 QSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESS 705
Query: 552 QPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVS 611
+ Q+ + QE+ + GT +P + G Q P + Q +
Sbjct: 706 SHPALSQSPMPQER-GFMAGTQR-NPQMAQY--GPQQTGPSMSPHPSPGGQMHAGISSFQ 761
Query: 612 RGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQ 671
+ S G G GP +G Y P++S P++ Y S P G +
Sbjct: 762 QSNSSGTYGPQMSQYGP----QGNY-SRPPAYSGVPSASY-----SGPGPGMGISAN--- 808
Query: 672 QNFKRGSGQSGPRGA-PRGRGGPPRPNRGM 700
N G G S P GA P GR P+ GM
Sbjct: 809 -NQMHGQGPSQPCGAVPLGR----MPSAGM 833
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 2 PSATSHSGS----GSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTG 47
P S+ GS S S+ PPPPS AAAGA A Q A G G
Sbjct: 370 PMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAA---GGQQAAAGMG 416
Score = 31.2 bits (69), Expect = 3.5
Identities = 35/127 (27%), Positives = 39/127 (30%), Gaps = 31/127 (24%)
Query: 588 QQPPQQNTG-------FPRSNQPYYNSRGVSRGGSRG---------------ARGLMNGY 625
QQPP G P N YY S + GG G G+M+
Sbjct: 153 QQPPVAVPGGGGGPAAVPEFNN-YYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSA 211
Query: 626 RGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRG 685
A G G D + S PNS Y GY R G G G G G
Sbjct: 212 SAAAAGAPGSMDPLQNSHEGYPNSQCNH--------YPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 686 APRGRGG 692
G GG
Sbjct: 264 GGGGGGG 270
Score = 30.8 bits (68), Expect = 4.5
Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 25/208 (12%)
Query: 496 GTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYN-------QS 548
G+S+P + G P SMQ ++N + N +QQ Y ASY+ Q
Sbjct: 1272 GSSEPFMTQG----QMPNSSMQDMYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEPYGQQ 1327
Query: 549 FSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTG------FPRSNQ 602
+ Q Q Q G Y P+ + G + P +++ G + Q
Sbjct: 1328 YPGQGPPSGQPPYGGHQ----PGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYSSQQQ 1383
Query: 603 PYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPN--SGYTQSQFS-AP 659
YN G S G R + Y P + R G + P G QS S P
Sbjct: 1384 EMYNQYGGSYSGP-DRRPIQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEGP 1442
Query: 660 RDYSGYQRDGYQQNFKRGSGQSGPRGAP 687
+ R+ ++ G GP AP
Sbjct: 1443 QQNMWAARNDMPYPYQNRQGPGGPTQAP 1470
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 44.3 bits (103), Expect = 4e-04
Identities = 96/390 (24%), Positives = 136/390 (34%), Gaps = 55/390 (14%)
Query: 330 QPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAI 389
QPQ +SP P P Q P+ + R MA MQ P Q + Q +
Sbjct: 480 QPQQSSP-YPGGSYGPPGPQRYPIGIQGRTPGAMAGMQYPQ---QQMPPQYGQQGVSGYC 535
Query: 390 VSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGY-TASQPL 448
Q +Q P L PP Q +P Q + P + EGY T SQP
Sbjct: 536 QQGQQPYYSQQPQPPHL--PP--------QAQYLPSQSQQRYQPQQDMSQEGYGTRSQPP 585
Query: 449 YQPSHAT--------EQRPQKEP-----IDQI----QATISLNTDQTTASSSLPAASQPQ 491
P ++RP P ID + +AT+S + ++SS S P
Sbjct: 586 LAPGKPNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPA 645
Query: 492 VFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSS 551
H S I +P V + + P++ Q Q +QS SS
Sbjct: 646 QSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESS 705
Query: 552 QPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVS 611
+ Q+ + QE+ + GT +P + G Q P + Q +
Sbjct: 706 SHPALSQSPMPQER-GFMAGTQR-NPQMAQY--GPQQTGPSMSPHPSPGGQMHAGISSFQ 761
Query: 612 RGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQ 671
+ S G G GP +G Y P++S P++ Y S P G +
Sbjct: 762 QSNSSGTYGPQMSQYGP----QGNY-SRPPAYSGVPSASY-----SGPGPGMGISAN--- 808
Query: 672 QNFKRGSGQSGPRGA-PRGRGGPPRPNRGM 700
N G G S P GA P GR P+ GM
Sbjct: 809 -NQMHGQGPSQPCGAVPLGR----MPSAGM 833
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 2 PSATSHSGS----GSKSSGPPPPSGSSGSEAAAGAGAAAPASQHPATGTG 47
P S+ GS S S+ PPPPS AAAGA A Q A G G
Sbjct: 370 PMMRSYGGSYPEYSSPSAPPPPPSQPQSQAAAAGAAA---GGQQAAAGMG 416
Score = 31.2 bits (69), Expect = 3.5
Identities = 35/127 (27%), Positives = 39/127 (30%), Gaps = 31/127 (24%)
Query: 588 QQPPQQNTG-------FPRSNQPYYNSRGVSRGGSRG---------------ARGLMNGY 625
QQPP G P N YY S + GG G G+M+
Sbjct: 153 QQPPVAVPGGGGGPAAVPEFNN-YYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSA 211
Query: 626 RGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRG 685
A G G D + S PNS Y GY R G G G G G
Sbjct: 212 SAAAAGAPGSMDPLQNSHEGYPNSQCNH--------YPGYSRPGAGGGGGGGGGGGGGSG 263
Query: 686 APRGRGG 692
G GG
Sbjct: 264 GGGGGGG 270
Score = 30.8 bits (68), Expect = 4.5
Identities = 49/208 (23%), Positives = 72/208 (34%), Gaps = 25/208 (12%)
Query: 496 GTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYN-------QS 548
G+S+P + G P SMQ ++N + N +QQ Y ASY+ Q
Sbjct: 1219 GSSEPFMTQG----QMPNSSMQDMYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEPYGQQ 1274
Query: 549 FSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTG------FPRSNQ 602
+ Q Q Q G Y P+ + G + P +++ G + Q
Sbjct: 1275 YPGQGPPSGQPPYGGHQ----PGLYPQQPNYKRHMDGMYGPPAKRHEGDMYNMQYSSQQQ 1330
Query: 603 PYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPN--SGYTQSQFS-AP 659
YN G S G R + Y P + R G + P G QS S P
Sbjct: 1331 EMYNQYGGSYSGP-DRRPIQGQYPYPYSRERMQGPGQIQTHGIPPQMMGGPLQSSSSEGP 1389
Query: 660 RDYSGYQRDGYQQNFKRGSGQSGPRGAP 687
+ R+ ++ G GP AP
Sbjct: 1390 QQNMWAARNDMPYPYQNRQGPGGPTQAP 1417
>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
sapiens]
Length = 898
Score = 43.9 bits (102), Expect = 5e-04
Identities = 47/169 (27%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 521 NMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTV-------VGTY 573
N N+PVPP + + Q + SY + S HQ +Q Q G
Sbjct: 725 NYNSPVPPKHAGKKQPHGGQQKPSYGSGYQS--HQGQQQSYNQSPYSNYGPPQGKQKGYN 782
Query: 574 HGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLM------NGYRG 627
HG S+ + N + S Y S G S G S G+ G GY G
Sbjct: 783 HGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGG 842
Query: 628 PANG---FRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQN 673
+ G ++G GY S N+P SG Q+ P Y Q GY +N
Sbjct: 843 GSGGGSSYQGKQGGYSQSNYNSPGSG--QNYSGPPSSYQSSQ-GGYGRN 888
Score = 33.1 bits (74), Expect = 0.91
Identities = 43/154 (27%), Positives = 52/154 (33%), Gaps = 45/154 (29%)
Query: 591 PQQNTGFPRSNQ--PYYNSRGVSRGGSRGARGLMNGYRGPANG----FRGGYDGYRPSFS 644
P G P N+ P N RG RGGS RG G+ G +G GY Y
Sbjct: 625 PGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGYG-G 683
Query: 645 NTPNSGYTQSQFSAPRDYSG-------------------YQRDGY--------------- 670
N+ +GY SQF + +SG YQ D Y
Sbjct: 684 NSATAGY--SQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQPH 741
Query: 671 --QQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQ 702
QQ GSG +G + P N G PQ
Sbjct: 742 GGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQ 775
>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
sapiens]
Length = 894
Score = 43.9 bits (102), Expect = 5e-04
Identities = 47/169 (27%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 521 NMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTV-------VGTY 573
N N+PVPP + + Q + SY + S HQ +Q Q G
Sbjct: 721 NYNSPVPPKHAGKKQPHGGQQKPSYGSGYQS--HQGQQQSYNQSPYSNYGPPQGKQKGYN 778
Query: 574 HGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLM------NGYRG 627
HG S+ + N + S Y S G S G S G+ G GY G
Sbjct: 779 HGQGSYSYSNSYNSPGGGGGSDYNYESKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGG 838
Query: 628 PANG---FRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQN 673
+ G ++G GY S N+P SG Q+ P Y Q GY +N
Sbjct: 839 GSGGGSSYQGKQGGYSQSNYNSPGSG--QNYSGPPSSYQSSQ-GGYGRN 884
Score = 33.1 bits (74), Expect = 0.91
Identities = 43/154 (27%), Positives = 52/154 (33%), Gaps = 45/154 (29%)
Query: 591 PQQNTGFPRSNQ--PYYNSRGVSRGGSRGARGLMNGYRGPANG----FRGGYDGYRPSFS 644
P G P N+ P N RG RGGS RG G+ G +G GY Y
Sbjct: 621 PGFGMGGPMHNEVPPPPNLRGRGRGGSIRGRGRGRGFGGANHGGYMNAGAGYGSYGYG-G 679
Query: 645 NTPNSGYTQSQFSAPRDYSG-------------------YQRDGY--------------- 670
N+ +GY SQF + +SG YQ D Y
Sbjct: 680 NSATAGY--SQFYSNGGHSGNASGGGGGGGGGSSGYGSYYQGDNYNSPVPPKHAGKKQPH 737
Query: 671 --QQNFKRGSGQSGPRGAPRGRGGPPRPNRGMPQ 702
QQ GSG +G + P N G PQ
Sbjct: 738 GGQQKPSYGSGYQSHQGQQQSYNQSPYSNYGPPQ 771
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 43.9 bits (102), Expect = 5e-04
Identities = 70/301 (23%), Positives = 114/301 (37%), Gaps = 44/301 (14%)
Query: 272 VPEAEPEPA-EEYTEQSEVESTEYVN--RQFMAETQFTSGEKEQVDEWTVETVEVVNSLQ 328
+PEA P P T + S+ +++ Q +A+ Q + +Q+ + ++ V + L
Sbjct: 27 LPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQ----QLQQMHQKQMQCVLQPHHLP 82
Query: 329 QQPQAASPSVP-------EPHSLTPVAQADPLVRRQRVQDLMAQM-----QGPYNFIQDS 376
P P +P +P P + Q+ Q QM GP +
Sbjct: 83 PPPLPPPPVMPGGGYGDWQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVP-- 140
Query: 377 MLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVS 436
++ E+ P + M P+Q+ MP PP + +QP P QP +Q P
Sbjct: 141 -MELESPPESPPVPPGSYMPPSQSY-MPPPQPPPSYYPPTSSQPYLPPAQPSPSQSP--- 195
Query: 437 STSEGYTASQPLYQPSHATEQ---RPQKEPIDQIQATISLNTDQTTASSSL---PAASQP 490
S+ Y A P Y S ++ Q + + QA+ S + + S L P ++ P
Sbjct: 196 -PSQSYLAPTPSYSSSSSSSQSYLSHSQSYLPSSQASPSRPSQGHSKSQLLAPPPPSAPP 254
Query: 491 QVFQAGTSKPLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFS 550
+PL S N + Q+ AP P +P T+ Q Q Q Y Q
Sbjct: 255 GNKTTVQQEPLESGAKNKSTEQQQA--------APEP---DPSTMTPQEQQQYWYRQHLL 303
Query: 551 S 551
S
Sbjct: 304 S 304
>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
Length = 589
Score = 43.5 bits (101), Expect = 7e-04
Identities = 38/100 (38%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 596 GFPRSNQPYYNSRGVSRGGSRGARGLMNGYRGPA-NGFRGGYDGYRPSFSNTPNSGYTQS 654
G RS Y RG GG RG G G RG G RGGY G R GY
Sbjct: 444 GGDRSGGGYGGDRGGGYGGDRG--GGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 501
Query: 655 QFSAPRDYSGY--QRDGYQQNFKRGSGQSGPRGAPRGRGG 692
+ D GY R GY + RG G G RG G GG
Sbjct: 502 RGGYGGDRGGYGGDRGGYGGDRSRG-GYGGDRGGGSGYGG 540
Score = 42.7 bits (99), Expect = 0.001
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 596 GFPRSNQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQ 655
G+ Y RG GG RG G G RG G RGGY G R + + G
Sbjct: 475 GYGGDRGGYGGDRGGGYGGDRGGYG---GDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGD 531
Query: 656 FSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRG--RGG 692
Y G + GY + + G G G RG G RGG
Sbjct: 532 RGGGSGYGGDRSGGYGGD-RSGGGYGGDRGGGYGGDRGG 569
Score = 40.8 bits (94), Expect = 0.004
Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 29/181 (16%)
Query: 539 NQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFP 598
N Y Q+ S + T+ Q + +Y S QS+ G ++ Q +
Sbjct: 22 NPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSYSQSY---GGYENQKQSSY--- 75
Query: 599 RSNQPYYNS---RGVSRGGSRGARGLMNGYRGPANGFR------GGYDGYRPSFSNTPN- 648
S QPY N + + GS+G R Y P G + GYD ++ S+ N
Sbjct: 76 -SQQPYNNQGQQQNMESSGSQGGRA--PSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 132
Query: 649 ----SGYTQSQ---FSAPRDYSGYQRDGYQQNFKRGS---GQSGPRGAPRGRGGPPRPNR 698
Y+Q+Q S +YS + +D + + G G G +G RGRGG + R
Sbjct: 133 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGR 192
Query: 699 G 699
G
Sbjct: 193 G 193
Score = 40.0 bits (92), Expect = 0.007
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 592 QQNTGFPRSNQPYYNS-RGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSG 650
Q N P ++P RG GG RG RG RG G RGGY G R G
Sbjct: 375 QCNEPRPEDSRPSGGDFRGRGYGGERGYRG-----RGGRGGDRGGYGGDRSG------GG 423
Query: 651 YTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRG--RGGPPRPNRG 699
Y + S+ YSG + G + G G G RG G RGG +RG
Sbjct: 424 YGGDR-SSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG 473
Score = 37.4 bits (85), Expect = 0.048
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 27/179 (15%)
Query: 509 NAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQY--QASYNQ---SFSSQPHQVEQTELQQ 563
N Q+M++ + P ++P+ QQ+ Y Q+ Y+Q S+ Q + +Q +
Sbjct: 82 NQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYS 140
Query: 564 EQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLMN 623
+ Q+ YH Q + + Q + + + N+ Y G S+GG RG G
Sbjct: 141 QNQQS----YHS---QRENYSHHTQDDRRDVSRYGEDNRGY----GGSQGGGRGRGGYDK 189
Query: 624 GYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQN--FKRGSGQ 680
RGP G GG G +F + G PR + + D N F +G G+
Sbjct: 190 DGRGPMTGSSGGDRGGFKNFGGHRDYG--------PRTDADSESDNSDNNTIFVQGLGE 240
>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
Length = 592
Score = 43.5 bits (101), Expect = 7e-04
Identities = 38/100 (38%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 596 GFPRSNQPYYNSRGVSRGGSRGARGLMNGYRGPA-NGFRGGYDGYRPSFSNTPNSGYTQS 654
G RS Y RG GG RG G G RG G RGGY G R GY
Sbjct: 447 GGDRSGGGYGGDRGGGYGGDRG--GGYGGDRGGGYGGDRGGYGGDRGGGYGGDRGGYGGD 504
Query: 655 QFSAPRDYSGY--QRDGYQQNFKRGSGQSGPRGAPRGRGG 692
+ D GY R GY + RG G G RG G GG
Sbjct: 505 RGGYGGDRGGYGGDRGGYGGDRSRG-GYGGDRGGGSGYGG 543
Score = 42.7 bits (99), Expect = 0.001
Identities = 33/99 (33%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 596 GFPRSNQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQ 655
G+ Y RG GG RG G G RG G RGGY G R + + G
Sbjct: 478 GYGGDRGGYGGDRGGGYGGDRGGYG---GDRGGYGGDRGGYGGDRGGYGGDRSRGGYGGD 534
Query: 656 FSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRG--RGG 692
Y G + GY + + G G G RG G RGG
Sbjct: 535 RGGGSGYGGDRSGGYGGD-RSGGGYGGDRGGGYGGDRGG 572
Score = 41.2 bits (95), Expect = 0.003
Identities = 46/181 (25%), Positives = 70/181 (38%), Gaps = 26/181 (14%)
Query: 539 NQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFP 598
N Y Q+ S + T+ Q + +Y S Q G ++ Q +
Sbjct: 22 NPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSY--- 78
Query: 599 RSNQPYYNS---RGVSRGGSRGARGLMNGYRGPANGFR------GGYDGYRPSFSNTPN- 648
S QPY N + + GS+G R Y P G + GYD ++ S+ N
Sbjct: 79 -SQQPYNNQGQQQNMESSGSQGGRA--PSYDQPDYGQQDSYDQQSGYDQHQGSYDEQSNY 135
Query: 649 ----SGYTQSQ---FSAPRDYSGYQRDGYQQNFKRGS---GQSGPRGAPRGRGGPPRPNR 698
Y+Q+Q S +YS + +D + + G G G +G RGRGG + R
Sbjct: 136 DQQHDSYSQNQQSYHSQRENYSHHTQDDRRDVSRYGEDNRGYGGSQGGGRGRGGYDKDGR 195
Query: 699 G 699
G
Sbjct: 196 G 196
Score = 40.0 bits (92), Expect = 0.007
Identities = 39/111 (35%), Positives = 46/111 (41%), Gaps = 15/111 (13%)
Query: 592 QQNTGFPRSNQPYYNS-RGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSG 650
Q N P ++P RG GG RG RG RG G RGGY G R G
Sbjct: 378 QCNEPRPEDSRPSGGDFRGRGYGGERGYRG-----RGGRGGDRGGYGGDRSG------GG 426
Query: 651 YTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRG--RGGPPRPNRG 699
Y + S+ YSG + G + G G G RG G RGG +RG
Sbjct: 427 YGGDR-SSGGGYSGDRSGGGYGGDRSGGGYGGDRGGGYGGDRGGGYGGDRG 476
Score = 37.4 bits (85), Expect = 0.048
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 27/179 (15%)
Query: 509 NAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQY--QASYNQ---SFSSQPHQVEQTELQQ 563
N Q+M++ + P ++P+ QQ+ Y Q+ Y+Q S+ Q + +Q +
Sbjct: 85 NQGQQQNMESSGSQGGRAPSYDQPD-YGQQDSYDQQSGYDQHQGSYDEQSNYDQQHDSYS 143
Query: 564 EQLQTVVGTYHGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLMN 623
+ Q+ YH Q + + Q + + + N+ Y G S+GG RG G
Sbjct: 144 QNQQS----YHS---QRENYSHHTQDDRRDVSRYGEDNRGY----GGSQGGGRGRGGYDK 192
Query: 624 GYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPRDYSGYQRDGYQQN--FKRGSGQ 680
RGP G GG G +F + G PR + + D N F +G G+
Sbjct: 193 DGRGPMTGSSGGDRGGFKNFGGHRDYG--------PRTDADSESDNSDNNTIFVQGLGE 243
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 43.1 bits (100), Expect = 9e-04
Identities = 93/410 (22%), Positives = 131/410 (31%), Gaps = 67/410 (16%)
Query: 354 VRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHS 413
+R+Q++Q + Q Q + Q P+ SA P PTQ PQ PP
Sbjct: 1812 LRQQQIQHRLQQAQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPP--- 1868
Query: 414 ESRLAQPNQVPVQPEATQVPLVSST------SEGYTASQ------PLYQPSHATEQRPQK 461
AQP PV P V+ T S G SQ P P A E Q
Sbjct: 1869 ----AQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQI 1924
Query: 462 EPIDQIQA---TISLNTDQTTASSSL-PAASQPQVFQAGTSKPLHSSG-INVNAAPFQSM 516
E Q Q +++N + + SQ +P SG + + P Q
Sbjct: 1925 EREAQQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQ 1984
Query: 517 QTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGS 576
Q P+P + P + Q Q + + S QP + Q+ L+T+ S
Sbjct: 1985 QAPLPQQQPMPGLPRP-VISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSP--SS 2041
Query: 577 PDQSHQVTGNHQQPPQ-------QNTGFPRSNQPYYNSR--------------------- 608
P Q QV + PQ Q T +NQP +
Sbjct: 2042 PQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSL 2101
Query: 609 --------GVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
GV R G + M G G+ P+ ++ N Y +
Sbjct: 2102 QNLNAMQAGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASM-NPQYREMLRRQLL 2160
Query: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRGRG---GPPRPNRGMPQMNTQQ 707
Q+ QQ ++ G +G G G G P P P M QQ
Sbjct: 2161 QQQQQQQQQQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQ 2210
Score = 40.4 bits (93), Expect = 0.006
Identities = 60/280 (21%), Positives = 105/280 (37%), Gaps = 35/280 (12%)
Query: 330 QPQAASPSVPEPHSLT-PVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTL--D 386
Q S +VP P+ ++ PV + P + Q+ Q P + ++ + Q
Sbjct: 1956 QMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAP---LPQQQPMPGLPRPVISMQAQAAVAG 2012
Query: 387 PAIVSAQP---MNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYT 443
P + S QP ++P+ D+ + + P + + N + P+ + T++ Y
Sbjct: 2013 PRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAK-YV 2071
Query: 444 ASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHS 503
A+QP QP + +P +P + SL + + +P P QA
Sbjct: 2072 ANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQ-NLNAMQAGVPRPGVPPQQQA-------M 2123
Query: 504 SGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQ 563
G+N M P + P QY+ + Q Q +Q + QQ
Sbjct: 2124 GGLNPQGQALNIMN----------PGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQ 2173
Query: 564 EQLQTVVGTYHGSPDQSHQVTGNHQ-QPPQQNTGFPRSNQ 602
+Q Q GS + + G+ Q Q PQ G+P + Q
Sbjct: 2174 QQQQ------QGSAGMAGGMAGHGQFQQPQGPGGYPPAMQ 2207
Score = 32.3 bits (72), Expect = 1.6
Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 21/230 (9%)
Query: 262 AASAPAVEDQVPEA--EPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVE 319
AA P+++ P P+PA + V S+ T +
Sbjct: 825 AAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSG------QTPTPTPGSVPSATQTQSTP 878
Query: 320 TVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLD 379
TV+ Q PQ +P P P TP + + Q Q P + +
Sbjct: 879 TVQAAAQAQVTPQPQTPVQP-PSVATP--------QSSQQQPTPVHAQPPGTPLSQAAAS 929
Query: 380 FENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTS 439
+N+ P+ V++ N Q P P + ++ + P E+ P
Sbjct: 930 IDNRVPTPSSVASAETNSQQ----PGPDVPVLEMKTETQAEDTEPDPGESKGEPRSEMME 985
Query: 440 EGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQ 489
E + + + + EQ+ + +D+ + + + + SSS ASQ
Sbjct: 986 EDLQGASQVKEETDIAEQKSEPMEVDEKKPEVKVEVKEEEESSSNGTASQ 1035
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 43.1 bits (100), Expect = 9e-04
Identities = 93/410 (22%), Positives = 131/410 (31%), Gaps = 67/410 (16%)
Query: 354 VRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHS 413
+R+Q++Q + Q Q + Q P+ SA P PTQ PQ PP
Sbjct: 1850 LRQQQIQHRLQQAQLMRRRMATMNTRNVPQQSLPSPTSAPPGTPTQQPSTPQTPQPP--- 1906
Query: 414 ESRLAQPNQVPVQPEATQVPLVSST------SEGYTASQ------PLYQPSHATEQRPQK 461
AQP PV P V+ T S G SQ P P A E Q
Sbjct: 1907 ----AQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAPPPPAQPPPAAVEAARQI 1962
Query: 462 EPIDQIQA---TISLNTDQTTASSSL-PAASQPQVFQAGTSKPLHSSG-INVNAAPFQSM 516
E Q Q +++N + + SQ +P SG + + P Q
Sbjct: 1963 EREAQQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQ 2022
Query: 517 QTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGS 576
Q P+P + P + Q Q + + S QP + Q+ L+T+ S
Sbjct: 2023 QAPLPQQQPMPGLPRP-VISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSP--SS 2079
Query: 577 PDQSHQVTGNHQQPPQ-------QNTGFPRSNQPYYNSR--------------------- 608
P Q QV + PQ Q T +NQP +
Sbjct: 2080 PQQQQQVLNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSL 2139
Query: 609 --------GVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSNTPNSGYTQSQFSAPR 660
GV R G + M G G+ P+ ++ N Y +
Sbjct: 2140 QNLNAMQAGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASM-NPQYREMLRRQLL 2198
Query: 661 DYSGYQRDGYQQNFKRGSGQSGPRGAPRGRG---GPPRPNRGMPQMNTQQ 707
Q+ QQ ++ G +G G G G P P P M QQ
Sbjct: 2199 QQQQQQQQQQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQ 2248
Score = 40.4 bits (93), Expect = 0.006
Identities = 60/280 (21%), Positives = 105/280 (37%), Gaps = 35/280 (12%)
Query: 330 QPQAASPSVPEPHSLT-PVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTL--D 386
Q S +VP P+ ++ PV + P + Q+ Q P + ++ + Q
Sbjct: 1994 QMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAP---LPQQQPMPGLPRPVISMQAQAAVAG 2050
Query: 387 PAIVSAQP---MNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYT 443
P + S QP ++P+ D+ + + P + + N + P+ + T++ Y
Sbjct: 2051 PRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQVLNILKSNPQLMAAFIKQRTAK-YV 2109
Query: 444 ASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHS 503
A+QP QP + +P +P + SL + + +P P QA
Sbjct: 2110 ANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQ-NLNAMQAGVPRPGVPPQQQA-------M 2161
Query: 504 SGINVNAAPFQSMQTVFNMNAPVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQ 563
G+N M P + P QY+ + Q Q +Q + QQ
Sbjct: 2162 GGLNPQGQALNIMN----------PGHNPNMASMNPQYREMLRRQLLQQQQQQQQQQQQQ 2211
Query: 564 EQLQTVVGTYHGSPDQSHQVTGNHQ-QPPQQNTGFPRSNQ 602
+Q Q GS + + G+ Q Q PQ G+P + Q
Sbjct: 2212 QQQQ------QGSAGMAGGMAGHGQFQQPQGPGGYPPAMQ 2245
Score = 32.3 bits (72), Expect = 1.6
Identities = 43/230 (18%), Positives = 78/230 (33%), Gaps = 21/230 (9%)
Query: 262 AASAPAVEDQVPEA--EPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVE 319
AA P+++ P P+PA + V S+ T +
Sbjct: 863 AAGMPSLQHTTPPGMTPPQPAAPTQPSTPVSSSG------QTPTPTPGSVPSATQTQSTP 916
Query: 320 TVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLD 379
TV+ Q PQ +P P P TP + + Q Q P + +
Sbjct: 917 TVQAAAQAQVTPQPQTPVQP-PSVATP--------QSSQQQPTPVHAQPPGTPLSQAAAS 967
Query: 380 FENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTS 439
+N+ P+ V++ N Q P P + ++ + P E+ P
Sbjct: 968 IDNRVPTPSSVASAETNSQQ----PGPDVPVLEMKTETQAEDTEPDPGESKGEPRSEMME 1023
Query: 440 EGYTASQPLYQPSHATEQRPQKEPIDQIQATISLNTDQTTASSSLPAASQ 489
E + + + + EQ+ + +D+ + + + + SSS ASQ
Sbjct: 1024 EDLQGASQVKEETDIAEQKSEPMEVDEKKPEVKVEVKEEEESSSNGTASQ 1073
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 43.1 bits (100), Expect = 9e-04
Identities = 88/416 (21%), Positives = 135/416 (32%), Gaps = 63/416 (15%)
Query: 326 SLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTL 385
++Q + Q+A + + P Q P Q+ Q Q P+ Q + +
Sbjct: 433 TMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQ 492
Query: 386 DPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTAS 445
P + P Q PP QP+Q P Q P ST++ + S
Sbjct: 493 TPHAQPSYQQQPQSQPPQLQSSQPPYSQ-----QPSQPPHQQSPAPYPSQQSTTQQHPQS 547
Query: 446 QPLYQPSHATEQRPQKEPIDQIQATISLNT--DQTTASSSLPAASQPQVFQAGTSKPLHS 503
QP Y A Q++P +T+S Q + S A Q F S
Sbjct: 548 QPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDS 607
Query: 504 SGINVNAAPFQSM----QTVFNMNAPVPPVNEPETL------------------------ 535
G ++AP + Q N++ P + P+
Sbjct: 608 FGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGIS 667
Query: 536 ----KQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPP 591
+Q N Q+ ++ S + V P V GN Q PP
Sbjct: 668 SSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGN-QMPP 726
Query: 592 QQNTGFPRS-NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSN-TPNS 649
+ +G S P N +++ RG M R P P +S+ P S
Sbjct: 727 RPPSGQSDSIMHPSMNQSSIAQD-----RGYMQ--RNP----------QMPQYSSPQPGS 769
Query: 650 GYTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPN-RGMPQMN 704
+ Q S + ++G YQQN G G + P+G G P +PN +P N
Sbjct: 770 ALSPRQPSGGQIHTG--MGSYQQNSMGSYGPQGGQYGPQG-GYPRQPNYNALPNAN 822
Score = 40.8 bits (94), Expect = 0.004
Identities = 90/424 (21%), Positives = 137/424 (32%), Gaps = 72/424 (16%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVE 319
+ A + Q+P + Y +Q + T Y N+Q Q +Q +
Sbjct: 439 QSAMGGLSYTQQIPPYGQQGPSGYGQQGQ---TPYYNQQSPHPQQQQPPYSQQPPS---Q 492
Query: 320 TVEVVNSLQQQPQAASPSVPE------------PHSLTPVAQADPLVRRQRVQDLMAQMQ 367
T S QQQPQ+ P + PH +P P +Q Q Q
Sbjct: 493 TPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPA----PYPSQQSTTQQHPQSQ 548
Query: 368 GPYNFIQDSMLDFENQTLDPA--IVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPV 425
PY+ Q + Q PA +S Q P Q +S+ R P ++
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTA---YSQQRFPPPQELSQ 605
Query: 426 QP---EATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQI----QATISLNTDQT 478
+A+ P ++S S+G L S + ID + + +S +
Sbjct: 606 DSFGSQASSAPSMTS-SKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTS 664
Query: 479 TASSSLPAASQPQVFQAGTSKPLHSSGIN---------------VNAAPFQSMQTVFNMN 523
SSS S P H GI + P N
Sbjct: 665 GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQM 724
Query: 524 APVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQV 583
P PP + +++ + Q+S Q + + Q + + S Q H
Sbjct: 725 PPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTG 784
Query: 584 TGNHQQ------PPQ-----QNTGFPRSNQPYYN--------SRGVSRG-GSRGARGLMN 623
G++QQ PQ G+PR QP YN S G++ G GA G M+
Sbjct: 785 MGSYQQNSMGSYGPQGGQYGPQGGYPR--QPNYNALPNANYPSAGMAGGINPMGAGGQMH 842
Query: 624 GYRG 627
G G
Sbjct: 843 GQPG 846
Score = 35.0 bits (79), Expect = 0.24
Identities = 34/130 (26%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 532 PETLKQQNQYQASYNQSFSSQ------PHQVEQTELQQEQLQT----VVGTY-------- 573
P+ +QQ Q SY FS+Q P +QT + Q+Q Q + GTY
Sbjct: 1326 PQQQQQQQQRHDSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQNYKRPMDGTYGPPAKRHE 1385
Query: 574 -----------HGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGVSRGGSRGARGLM 622
G P Q Q QQ P Q YN G + + A
Sbjct: 1386 GEMYSVPYSTGQGQPQQQQLPPAQPQPASQQQAAQPSPQQDVYNQYGNAYPATATAATER 1445
Query: 623 NGYRGPANGF 632
GP N F
Sbjct: 1446 RPAGGPQNQF 1455
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 43.1 bits (100), Expect = 9e-04
Identities = 88/416 (21%), Positives = 135/416 (32%), Gaps = 63/416 (15%)
Query: 326 SLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTL 385
++Q + Q+A + + P Q P Q+ Q Q P+ Q + +
Sbjct: 433 TMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQ 492
Query: 386 DPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTAS 445
P + P Q PP QP+Q P Q P ST++ + S
Sbjct: 493 TPHAQPSYQQQPQSQPPQLQSSQPPYSQ-----QPSQPPHQQSPAPYPSQQSTTQQHPQS 547
Query: 446 QPLYQPSHATEQRPQKEPIDQIQATISLNT--DQTTASSSLPAASQPQVFQAGTSKPLHS 503
QP Y A Q++P +T+S Q + S A Q F S
Sbjct: 548 QPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQDS 607
Query: 504 SGINVNAAPFQSM----QTVFNMNAPVPPVNEPETL------------------------ 535
G ++AP + Q N++ P + P+
Sbjct: 608 FGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGIS 667
Query: 536 ----KQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQVTGNHQQPP 591
+Q N Q+ ++ S + V P V GN Q PP
Sbjct: 668 SSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGN-QMPP 726
Query: 592 QQNTGFPRS-NQPYYNSRGVSRGGSRGARGLMNGYRGPANGFRGGYDGYRPSFSN-TPNS 649
+ +G S P N +++ RG M R P P +S+ P S
Sbjct: 727 RPPSGQSDSIMHPSMNQSSIAQD-----RGYMQ--RNP----------QMPQYSSPQPGS 769
Query: 650 GYTQSQFSAPRDYSGYQRDGYQQNFKRGSGQSGPRGAPRGRGGPPRPN-RGMPQMN 704
+ Q S + ++G YQQN G G + P+G G P +PN +P N
Sbjct: 770 ALSPRQPSGGQIHTG--MGSYQQNSMGSYGPQGGQYGPQG-GYPRQPNYNALPNAN 822
Score = 40.8 bits (94), Expect = 0.004
Identities = 90/424 (21%), Positives = 137/424 (32%), Gaps = 72/424 (16%)
Query: 260 EEAASAPAVEDQVPEAEPEPAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVE 319
+ A + Q+P + Y +Q + T Y N+Q Q +Q +
Sbjct: 439 QSAMGGLSYTQQIPPYGQQGPSGYGQQGQ---TPYYNQQSPHPQQQQPPYSQQPPS---Q 492
Query: 320 TVEVVNSLQQQPQAASPSVPE------------PHSLTPVAQADPLVRRQRVQDLMAQMQ 367
T S QQQPQ+ P + PH +P P +Q Q Q
Sbjct: 493 TPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPA----PYPSQQSTTQQHPQSQ 548
Query: 368 GPYNFIQDSMLDFENQTLDPA--IVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPV 425
PY+ Q + Q PA +S Q P Q +S+ R P ++
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTA---YSQQRFPPPQELSQ 605
Query: 426 QP---EATQVPLVSSTSEGYTASQPLYQPSHATEQRPQKEPIDQI----QATISLNTDQT 478
+A+ P ++S S+G L S + ID + + +S +
Sbjct: 606 DSFGSQASSAPSMTS-SKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTS 664
Query: 479 TASSSLPAASQPQVFQAGTSKPLHSSGIN---------------VNAAPFQSMQTVFNMN 523
SSS S P H GI + P N
Sbjct: 665 GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQM 724
Query: 524 APVPPVNEPETLKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTYHGSPDQSHQV 583
P PP + +++ + Q+S Q + + Q + + S Q H
Sbjct: 725 PPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTG 784
Query: 584 TGNHQQ------PPQ-----QNTGFPRSNQPYYN--------SRGVSRG-GSRGARGLMN 623
G++QQ PQ G+PR QP YN S G++ G GA G M+
Sbjct: 785 MGSYQQNSMGSYGPQGGQYGPQGGYPR--QPNYNALPNANYPSAGMAGGINPMGAGGQMH 842
Query: 624 GYRG 627
G G
Sbjct: 843 GQPG 846
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 43.1 bits (100), Expect = 9e-04
Identities = 80/397 (20%), Positives = 142/397 (35%), Gaps = 33/397 (8%)
Query: 219 EGKEKPVCGTTYKVLKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVPEAEPE 278
EG E P + E VE + ++ D + E EEAA + Q PE+E
Sbjct: 1904 EGAEAPEAEKEAQPETESVEAL-ETEGEDEPESEGAEAQEAEEAAQEAEGQTQ-PESEVI 1961
Query: 279 PAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVDEWTVETVEVVNSLQQQPQAASPSV 338
++E E+++ ES + + ETQ GE + E VE E +Q+ + A P
Sbjct: 1962 ESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESE-DVEAPEAEGEMQEAEEEAQPE- 2019
Query: 339 PEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQDSMLDFENQTLDPAIVSAQ-PMNP 397
+ +A P + Q++ + Q Q E + A+ +
Sbjct: 2020 ------SDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEEAQEAEGEVQE 2073
Query: 398 TQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGYTASQPLYQPSHATEQ 457
+ P+ SE AQ + QPE+ V + E A + + P E
Sbjct: 2074 AEGEAHPE-------SEDVDAQEAEGEAQPESEGVEAPEAEGEAQKA-EGIEAPETEGEA 2125
Query: 458 RPQKEPIDQIQATISLNTDQTTASSSLPAASQPQVFQAGTSKPLHSSGINVNAAPFQSMQ 517
+P+ E I+ +A + P + + A S GI A ++
Sbjct: 2126 QPESEGIEAPEA----------EGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQP 2175
Query: 518 TVFNMNAP-VPPVNEPET---LKQQNQYQASYNQSFSSQPHQVEQTELQQEQLQTVVGTY 573
+ + AP +PE+ + + +A P E+ + + E ++T
Sbjct: 2176 ELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEAEG 2235
Query: 574 HGSPDQSHQVTGNHQQPPQQNTGFPRSNQPYYNSRGV 610
P+ + G + PQ + G +S + +S V
Sbjct: 2236 EAQPESEGETQGEKKGSPQVSLGDGQSEEASESSSPV 2272
Score = 30.4 bits (67), Expect = 5.9
Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 28/208 (13%)
Query: 259 EEEAASAPAVEDQVPEAEPE--PAEEYTEQSEVESTEYVNRQFMAETQFTSGEKEQVD-E 315
E E AP E EAE E P E E E E E Q S + E + E
Sbjct: 1847 ESEGVEAPEAEGDAQEAEGEAQPESEDVEAPEAE----------GEAQPESEDVETPEAE 1896
Query: 316 WTVETVEVVNSLQQQPQAASPSVPEPHSLTPVAQADPLVRRQRVQDLMAQMQGPYNFIQD 375
W V+ + + A P +L + +P Q+ ++
Sbjct: 1897 WEVQPESEGAEAPEAEKEAQPETESVEALETEGEDEPESEGAEAQE-----------AEE 1945
Query: 376 SMLDFENQTL-DPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPL 434
+ + E QT + ++ +Q + + V E++ A+ QPE+ V
Sbjct: 1946 AAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGE---AQPESEDVEA 2002
Query: 435 VSSTSEGYTASQPLYQPSHATEQRPQKE 462
+ E A + S E +P+ E
Sbjct: 2003 PEAEGEMQEAEEEAQPESDGVEAQPKSE 2030
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 42.7 bits (99), Expect = 0.001
Identities = 59/266 (22%), Positives = 119/266 (44%), Gaps = 27/266 (10%)
Query: 56 QILGVIDKKLRNLEKKKGKLDDYQERMNKGERLNQDQLDAVSKYQEVTNNLEFAKELQRS 115
++L V +K+ + ++ K ++ +E + + QL SK QE+ N L+ +E +
Sbjct: 820 ELLKVANKE-KTVQDLKQEIKALKEEIGNVQLEKAQQLSITSKVQELQNLLKGKEEQMNT 878
Query: 116 FMALSQDIQKTIKKTARREQLMREEAEQKRLKTVLELQYVLDKLGD----DEVRTDLKQG 171
A+ ++ +K + T + Q ++EE E + Q+ L + +E+ LK+
Sbjct: 879 MKAVLEEKEKDLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEK 938
Query: 172 LNGV----PILSEEELSLLDEFYKLVDPERDMSL------RLNEQ-YEHASI-----HLW 215
N + +L E E L + L D + + L +L +Q Y+ AS L
Sbjct: 939 ENELKRLEAMLKERESDLSSKTQLLQDVQDENKLFKSQIEQLKQQNYQQASSFPPHEELL 998
Query: 216 DLLEGKEKPVCGTTYKV--LKEIVERVFQSNYFDSTHNHQNGLCEEEEAASAPAVEDQVP 273
++ +EK + G ++ LK+ VE + N + +N E A++ ++D+V
Sbjct: 999 KVISEREKEISGLWNELDSLKDAVEHQRKKN---NDLREKNWEAMEALASTEKMLQDKVN 1055
Query: 274 EAEPEPAEEYTEQSEVESTEYVNRQF 299
+ E ++ E E+E+ E + + F
Sbjct: 1056 KTSKE-RQQQVEAVELEAKEVLKKLF 1080
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.125 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,743,876
Number of Sequences: 37866
Number of extensions: 1636768
Number of successful extensions: 14437
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 618
Number of HSP's that attempted gapping in prelim test: 12201
Number of HSP's gapped (non-prelim): 2607
length of query: 709
length of database: 18,247,518
effective HSP length: 109
effective length of query: 600
effective length of database: 14,120,124
effective search space: 8472074400
effective search space used: 8472074400
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.