Search of human proteins with 12597657

Search of human proteins with 12597657

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12597657 receptor accessory protein 1 [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12597657 receptor accessory protein 1 [Homo sapiens]               407   e-114
gi|42476206 receptor accessory protein 2 [Homo sapiens]               263   1e-70
gi|47679089 receptor accessory protein 3 [Homo sapiens]               259   8e-70
gi|20149695 receptor accessory protein 4 [Homo sapiens]               250   5e-67
gi|115430112 receptor accessory protein 5 [Homo sapiens]               98   4e-21
gi|19923919 receptor accessory protein 6 [Homo sapiens]                84   8e-17
gi|160948599 integrator complex subunit 1 [Homo sapiens]               34   0.096
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]                  33   0.16 
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]                  33   0.16 
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]                   33   0.16 
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]                   33   0.16 
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ...    33   0.21 
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ...    33   0.21 
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    33   0.21 
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...    33   0.21 
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    33   0.21 
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             33   0.21 
gi|145580586 kintoun isoform 2 [Homo sapiens]                          32   0.47 
gi|145580588 kintoun isoform 1 [Homo sapiens]                          32   0.47 
gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]             32   0.47 
gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]       31   0.62 
gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]               31   0.81 
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]            31   0.81 
gi|23510333 pygopus homolog 2 [Homo sapiens]                           31   0.81 
gi|53829365 potassium channel tetramerisation domain containing ...    31   0.81 
gi|118918413 MICAL C-terminal like [Homo sapiens]                      30   1.1  
gi|11067749 bromodomain containing protein 3 [Homo sapiens]            30   1.1  
gi|98986321 gliomedin [Homo sapiens]                                   30   1.1  
gi|142976757 immediate early response 5 [Homo sapiens]                 30   1.4  
gi|78499633 phospholipase C, eta 2 [Homo sapiens]                      30   1.8  

>gi|12597657 receptor accessory protein 1 [Homo sapiens]
          Length = 201

 Score =  407 bits (1047), Expect = e-114
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
           MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC
Sbjct: 1   MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60

Query: 61  WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
           WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH
Sbjct: 61  WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120

Query: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG 180
           FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG
Sbjct: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG 180

Query: 181 KHGQPKMSRSASESASSSGTA 201
           KHGQPKMSRSASESASSSGTA
Sbjct: 181 KHGQPKMSRSASESASSSGTA 201


>gi|42476206 receptor accessory protein 2 [Homo sapiens]
          Length = 252

 Score =  263 bits (671), Expect = 1e-70
 Identities = 133/180 (73%), Positives = 151/180 (83%), Gaps = 7/180 (3%)

Query: 1   MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
           MVSWIISRLVVLIFGTLYPAY SYKAVK+K++KEYVKWMMYWI+FA FTTAET TDI L 
Sbjct: 1   MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60

Query: 61  WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
           WFPFY+ELKIAFV WLLSPYTKGSS+LYRKFVHPTLS+KEKEID+ + QA+D+SY+ ++ 
Sbjct: 61  WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120

Query: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGA---PAPSG--PPPPGS 175
            GKRGLN+AA AAV AA+K  G LSE+LRSFSMQDLT IR + A     P G   P PGS
Sbjct: 121 VGKRGLNLAANAAVTAAAK--GVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGS 178


>gi|47679089 receptor accessory protein 3 [Homo sapiens]
          Length = 255

 Score =  259 bits (663), Expect = 8e-70
 Identities = 127/191 (66%), Positives = 153/191 (80%), Gaps = 3/191 (1%)

Query: 1   MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
           MVSW+ISR VVL+FG LYPAYYSYKAVK+K++KEYV+WMMYWI+FAL+T  ET  D  + 
Sbjct: 1   MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVA 60

Query: 61  WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
           WFP YYELKIAFV WLLSPYTKG+SL+YRKF+HP LSSKE+EIDD +VQAK+R Y+ +V+
Sbjct: 61  WFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVN 120

Query: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPPGSGRASG 180
           FG++GLN+AATAAV AA K QGA++ERLRSFSM DLTTI+GD    P G  P      + 
Sbjct: 121 FGRQGLNLAATAAVTAAVKSQGAITERLRSFSMHDLTTIQGD---EPVGQRPYQPLPEAK 177

Query: 181 KHGQPKMSRSA 191
           K  +P  S SA
Sbjct: 178 KKSKPAPSESA 188


>gi|20149695 receptor accessory protein 4 [Homo sapiens]
          Length = 257

 Score =  250 bits (639), Expect = 5e-67
 Identities = 121/170 (71%), Positives = 143/170 (84%)

Query: 1   MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
           MVSW+I RLVVL+FG L PAY SYKAVK+K+I+EYV+WMMYWI+FALF  AE  TDIF+ 
Sbjct: 1   MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60

Query: 61  WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
           WFPFYYE+K+AFV WLLSPYTKG+SLLYRKFVHP+LS  EKEID  +VQAK+RSY+ ++ 
Sbjct: 61  WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120

Query: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGP 170
           FGKRGLN+AA+AAV AA+K QGAL+ RLRSFSMQDL +I    APA   P
Sbjct: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDP 170


>gi|115430112 receptor accessory protein 5 [Homo sapiens]
          Length = 189

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 1/107 (0%)

Query: 9   LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
           L+  + G  YPAY S KA++S + ++  +W+ YW+++ +F+ AE F+DIFL WFPFYY L
Sbjct: 57  LLCNLIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYML 116

Query: 69  KIAFVAWLLSPY-TKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRS 114
           K  F+ W ++P  + G+ LLY++ + P     E ++D  +   KD++
Sbjct: 117 KCGFLLWCMAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKA 163


>gi|19923919 receptor accessory protein 6 [Homo sapiens]
          Length = 184

 Score = 84.0 bits (206), Expect = 8e-17
 Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 1/110 (0%)

Query: 9   LVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLCWFPFYYEL 68
           L+  + G +YPAY S KA++S    +   W+ YW+++ALF  AE F+D+ L WFPFYY  
Sbjct: 56  LLCNLIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVG 115

Query: 69  KIAFVAWLLSPYT-KGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDA 117
           K AF+ + ++P    G+ +LY++ V P        +D  +     R+ DA
Sbjct: 116 KCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALDA 165


>gi|160948599 integrator complex subunit 1 [Homo sapiens]
          Length = 2190

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 157 TTIRGDGAPA-PSGPPPPGSGRASGKHGQPKMSRSAS 192
           TT+R   A A PSG PPPG   A G  GQ   S++AS
Sbjct: 7   TTVRRPSAAAKPSGHPPPGDFIALGSKGQANESKTAS 43


>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
          Length = 1205

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 164 APAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGT 200
           +PA S PPPP SG AS +HG P    S+S  A   GT
Sbjct: 938 SPATSFPPPPSSG-ASFQHGGPGAPPSSSAYALPPGT 973


>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
          Length = 1220

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 164 APAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGT 200
           +PA S PPPP SG AS +HG P    S+S  A   GT
Sbjct: 938 SPATSFPPPPSSG-ASFQHGGPGAPPSSSAYALPPGT 973


>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
          Length = 1181

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 164 APAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGT 200
           +PA S PPPP SG AS +HG P    S+S  A   GT
Sbjct: 899 SPATSFPPPPSSG-ASFQHGGPGAPPSSSAYALPPGT 934


>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
          Length = 1220

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 164 APAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGT 200
           +PA S PPPP SG AS +HG P    S+S  A   GT
Sbjct: 938 SPATSFPPPPSSG-ASFQHGGPGAPPSSSAYALPPGT 973


>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
           sapiens]
          Length = 492

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 132 AAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP-----GSGRASGKHGQPK 186
           AAV  A  G GA   RL          IRG GA  P+  PP      G G   G  G   
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFD 466

Query: 187 MSRSASESASSSGT 200
           +S   S ++SS G+
Sbjct: 467 LSVGVSAASSSLGS 480


>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
           sapiens]
          Length = 492

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 132 AAVMAASKGQGALSERLRSFSMQDLTTIRGDGAPAPSGPPPP-----GSGRASGKHGQPK 186
           AAV  A  G GA   RL          IRG GA  P+  PP      G G   G  G   
Sbjct: 407 AAVCHALAGAGAPGGRLELGLSPGTRLIRGGGAAVPTAAPPAPLPRWGPGPLPGPTGLFD 466

Query: 187 MSRSASESASSSGT 200
           +S   S ++SS G+
Sbjct: 467 LSVGVSAASSSLGS 480


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
           [Homo sapiens]
          Length = 2000

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)

Query: 88  YRKFVHPTLSSKEKEIDDC----LVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGA 143
           + +F+ P ++ K  +I       ++ AK R + A   F      VAA AA  AA     A
Sbjct: 165 FSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAA-----A 219

Query: 144 LSERLRSFSMQDLTTIRGDGAPAPSGPP-----PPGSGRASGKHGQPKMSRSASES 194
           ++E++ S ++   T I   G PA   PP     PP   RA  K G+    +  S+S
Sbjct: 220 VAEQV-SAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKS 274


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
           [Homo sapiens]
          Length = 1966

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)

Query: 88  YRKFVHPTLSSKEKEIDDC----LVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGA 143
           + +F+ P ++ K  +I       ++ AK R + A   F      VAA AA  AA     A
Sbjct: 165 FSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAA-----A 219

Query: 144 LSERLRSFSMQDLTTIRGDGAPAPSGPP-----PPGSGRASGKHGQPKMSRSASES 194
           ++E++ S ++   T I   G PA   PP     PP   RA  K G+    +  S+S
Sbjct: 220 VAEQV-SAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKS 274


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
           [Homo sapiens]
          Length = 2059

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 15/116 (12%)

Query: 88  YRKFVHPTLSSKEKEIDDC----LVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGA 143
           + +F+ P ++ K  +I       ++ AK R + A   F      VAA AA  AA     A
Sbjct: 224 FSQFMRPLIAKKNPKIPMSKMMTILGAKWREFSANNPFKGSAAAVAAAAAAAAA-----A 278

Query: 144 LSERLRSFSMQDLTTIRGDGAPAPSGPP-----PPGSGRASGKHGQPKMSRSASES 194
           ++E++ S ++   T I   G PA   PP     PP   RA  K G+    +  S+S
Sbjct: 279 VAEQV-SAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRSKS 333


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 149 RSFSMQDLTTIRGDGAPAPSGPPPPGSGRASGKHG-----QPKMSRSASESAS 196
           RS S    ++  G G  AP   P PGS R  G HG     +P  +R AS S S
Sbjct: 421 RSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPS 473


>gi|145580586 kintoun isoform 2 [Homo sapiens]
          Length = 789

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 97  SSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDL 156
           S++E E      +A+D  +D  V  G  G  V        A     A  ER+     QDL
Sbjct: 382 SAREGEAGPARSRAEDGGHDTCVA-GAAGSGVTTLGDPEVAPPPAAAGEERVPKPGEQDL 440

Query: 157 TTIRGDGAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSG 199
           +   G   P     P PG   + G  G P +S  +    SS+G
Sbjct: 441 SRHAGS-PPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAG 482


>gi|145580588 kintoun isoform 1 [Homo sapiens]
          Length = 837

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 97  SSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDL 156
           S++E E      +A+D  +D  V  G  G  V        A     A  ER+     QDL
Sbjct: 382 SAREGEAGPARSRAEDGGHDTCVA-GAAGSGVTTLGDPEVAPPPAAAGEERVPKPGEQDL 440

Query: 157 TTIRGDGAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSG 199
           +   G   P     P PG   + G  G P +S  +    SS+G
Sbjct: 441 SRHAGS-PPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGSSAG 482


>gi|5901944 elastin microfibril interfacer 1 [Homo sapiens]
          Length = 1016

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 144 LSERLRSFSMQDLTTIRGD----GAPAPSGPP----PPGSGRASGKHG 183
           L +RL   S++DLT   G+    G P   GPP    PPGS    G+ G
Sbjct: 800 LEDRLHQLSLKDLTGPAGEAGPPGPPGLQGPPGPAGPPGSPGKDGQEG 847


>gi|5032179 tripartite motif-containing 28 protein [Homo sapiens]
          Length = 835

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 164 APAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGTA 201
           A A SG P PG G A G+      S +AS SAS++ ++
Sbjct: 13  ASAASGSPGPGEGSAGGEKRSTAPSAAASASASAAASS 50


>gi|27754778 ficolin 3 isoform 2 precursor [Homo sapiens]
          Length = 288

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 163 GAPAPSGPP-PPGSGRASGKHGQPKMSRSASESASSSG 199
           GAP P GPP PPG     G+ G        S+ A+ SG
Sbjct: 57  GAPGPQGPPGPPGKMGPKGEPGPRNCRELLSQGATLSG 94


>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 625

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 126 LNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRG--DGAPAPSG----PPPPGSGRAS 179
           L+ AA AA  AAS      S    S S+      R     +P+PS     PPP GS    
Sbjct: 184 LSPAAAAAAAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPPAGSRTGR 243

Query: 180 GKHGQPKMSRS-----ASESASSSGT 200
             H    +SR      +SES +SS +
Sbjct: 244 KSHSLDSLSRRREGALSSESGASSSS 269


>gi|23510333 pygopus homolog 2 [Homo sapiens]
          Length = 406

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 159 IRGDGAPAPSGPPPPGSGRASGKHG-QPKMSRSASESASSSGTA 201
           + G G PAP  P PP +GR  GK G Q K        +++ G A
Sbjct: 12  LEGGGGPAPP-PAPPSTGRKQGKAGLQMKSPEKKRRKSNTQGPA 54


>gi|53829365 potassium channel tetramerisation domain containing 2
           [Homo sapiens]
          Length = 263

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 159 IRGDGAPAPSGPPPPGSGRASGKHGQP-KMSRSASESASSSGTA 201
           +RG  +P P+GP P G GR +    QP +      E A   G A
Sbjct: 28  VRGPPSPRPAGPTPRGHGRPAAAVAQPLEPGPGPPERAGGGGAA 71


>gi|118918413 MICAL C-terminal like [Homo sapiens]
          Length = 695

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 108 VQAKDRSYDALVHFGK-----RGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGD 162
           ++ KD+S+++ +   +     R L  +    V+     Q AL + L+ F    L      
Sbjct: 400 LRLKDKSFESFLQESRQRKDIRDLFGSPKRKVLPEDSAQ-ALEKLLQPFKSTSLRQAAPP 458

Query: 163 GAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGTA 201
             P P  PPPP +   +     P  ++    S+S+S T+
Sbjct: 459 PPPPPPPPPPPPTAGGADSKNFPLRAQVTEASSSASSTS 497


>gi|11067749 bromodomain containing protein 3 [Homo sapiens]
          Length = 726

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 95  TLSSKEKEIDDCLVQAKDRSYDALVHFGKRGLNVAATAAVMAASKGQGALSERLRSFSMQ 154
           TL   E+ +  CL Q K R       F   G   AA +    A + +  L +RL+  S Q
Sbjct: 625 TLRELERYVKSCL-QKKQRK-----PFSASGKKQAAKSKEELAQEKKKELEKRLQDVSGQ 678

Query: 155 DLTTIRGDGAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSGTA 201
             ++ +      P+    PGS  + G       S S S S+SSSG++
Sbjct: 679 LSSSKK------PARKEKPGSAPSGGPSRLSSSSSSESGSSSSSGSS 719


>gi|98986321 gliomedin [Homo sapiens]
          Length = 551

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 163 GAPAPSGPP-PPGSGRASGKHGQPKM 187
           G P P GPP PPGS RA G   QP M
Sbjct: 242 GPPGPPGPPGPPGSRRAKGPR-QPSM 266


>gi|142976757 immediate early response 5 [Homo sapiens]
          Length = 327

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 163 GAPAPSGPPPPGSGRASGKHGQPKMSRSASESASSSG 199
           G PA  G PPP + RAS    +P+  RS+   A   G
Sbjct: 78  GPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVG 114


>gi|78499633 phospholipase C, eta 2 [Homo sapiens]
          Length = 1416

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 9/57 (15%)

Query: 137  ASKGQGALSER-LRSFSMQ-------DLTTIRGDGAPAPSGPPPPGSGRASGKHGQP 185
            A +G G+ S R  R  S Q        L TI  + AP P GPPPP +   S   G+P
Sbjct: 976  AQEGPGSGSPRDTRPLSTQRPLPPLCSLETIAEEPAPGP-GPPPPAAVPTSSSQGRP 1031


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,077,774
Number of Sequences: 37866
Number of extensions: 392824
Number of successful extensions: 4859
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 4498
Number of HSP's gapped (non-prelim): 501
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.