Guide to the Human Genome
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Name: KCTD2 Sequence: fasta or formatted (263aa) NCBI GI: 53829365
Description:

potassium channel tetramerisation domain containing 2

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         17           3
 C cysteine            1.9          5           2
 D aspartate           4.2         11           1
 E glutamate           9.5         25           3
 F phenylalanine       2.3          6           1
 G glycine            12.9         34           5
 H histidine           1.1          3           1
 I isoleucine          4.2         11           2
 K lysine              3.4          9           1
 L leucine             8.7         23           1
 M methionine          1.9          5           1
 N asparagine          3.8         10           2
 P proline             7.6         20           2
 Q glutamine           4.2         11           1
 R arginine            7.6         20           1
 S serine              5.7         15           2
 T threonine           4.6         12           2
 V valine              6.1         16           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing ... 
KCTD5                 0.598   potassium channel tetramerisation domain containing 5...
KCTD17                0.509   potassium channel tetramerisation domain containing...
KCTD9                 0.136   potassium channel tetramerisation domain containing ...
LOC647013             0.118   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.118   PREDICTED: similar to potassium channel tetramerisa...
LOC647013             0.118   PREDICTED: similar to potassium channel tetramerisa...
SHKBP1                0.113   SH3KBP1 binding protein 1 
KCTD3                 0.099   potassium channel tetramerisation domain containing ...
KCTD14                0.072   potassium channel tetramerisation domain containing...
KCTD12                0.072   potassium channel tetramerisation domain containing ...
KCTD8                 0.070   potassium channel tetramerisation domain containing ...
KCTD4                 0.070   potassium channel tetramerisation domain containing...
TNFAIP1               0.068   tumor necrosis factor, alpha-induced protein 1 [Homo...
KCNC3                 0.066   Shaw-related voltage-gated potassium channel protein...
KCTD10                0.064   potassium channel tetramerisation domain containing ...
KCTD16                0.064   potassium channel tetramerisation domain containing ...
KCTD6                 0.058   potassium channel tetramerisation domain containing...
KCTD6                 0.058   potassium channel tetramerisation domain containing...
KCTD13                0.058   potassium channel tetramerisation domain containing ...
KCTD21                0.056   potassium channel tetramerisation domain containing ...
KCTD15                0.056   potassium channel tetramerisation domain containing...
KCTD15                0.056   potassium channel tetramerisation domain containing...
KCTD15                0.056   potassium channel tetramerisation domain containing...
KCND1                 0.050   potassium voltage-gated channel, Shal-related subfam...
KCTD7                 0.050   potassium channel tetramerisation domain containing ...
KCNB1                 0.049   potassium voltage-gated channel, Shab-related subfami...
KCND2                 0.049   potassium voltage-gated channel, Shal-related subfami...
KCNRG                 0.049   potassium channel regulator isoform 2 
KCNRG                 0.049   potassium channel regulator isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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