Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SEC31A Sequence: fasta or formatted (1205aa) NCBI GI: 116256340
Description:

SEC31 homolog A isoform 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [1106aa] SEC31 homolog A isoform 4
alt prot [1220aa] SEC31 homolog A isoform 1
alt prot [1220aa] SEC31 homolog A isoform 1
alt prot [1181aa] SEC31 homolog A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3        100           3
 C cysteine            1.4         17           1
 D aspartate           4.7         57           2
 E glutamate           4.6         56           2
 F phenylalanine       3.2         38           1
 G glycine             6.6         80           2
 H histidine           2.7         32           2
 I isoleucine          5.1         61           2
 K lysine              5.4         65           4
 L leucine             9.0        108           3
 M methionine          2.2         27           1
 N asparagine          4.4         53           2
 P proline             8.8        106           4
 Q glutamine           7.4         89           5
 R arginine            3.2         39           2
 S serine              8.9        107           3
 T threonine           5.4         65           2
 V valine              5.1         61           2
 W tryptophan          1.3         16           1
 Y tyrosine            2.3         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SEC31 homolog A isoform 3 
SEC31A                0.996   SEC31 homolog A isoform 1 
SEC31A                0.996   SEC31 homolog A isoform 1 
SEC31A                0.958   SEC31 homolog A isoform 2 
SEC31A                0.763   SEC31 homolog A isoform 4 
SEC31B                0.427   SEC31 homolog B 
NCOA6                 0.020   nuclear receptor coactivator 6 
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
RERE                  0.017   atrophin-1 like protein isoform b 
RERE                  0.017   atrophin-1 like protein isoform a 
RERE                  0.017   atrophin-1 like protein isoform a 
FLJ22184              0.017   PREDICTED: hypothetical protein LOC80164 
PRB2                  0.017   proline-rich protein BstNI subfamily 2 
ATXN2                 0.017   ataxin 2 
ARHGAP17              0.017   nadrin isoform 1 
POLR2A                0.016   DNA-directed RNA polymerase II A 
ARHGAP17              0.016   nadrin isoform 2 
BRD4                  0.015   bromodomain-containing protein 4 isoform long 
WDR59                 0.015   WD repeat domain 59 
EP300                 0.014   E1A binding protein p300 
RBBP4                 0.014   retinoblastoma binding protein 4 isoform c 
RBBP4                 0.014   retinoblastoma binding protein 4 isoform b 
RBBP4                 0.014   retinoblastoma binding protein 4 isoform a 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
PRB1                  0.014   proline-rich protein BstNI subfamily 1 isoform 1 pre...
WSB1                  0.014   WD repeat and SOCS box-containing 1 isoform 1 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
WIPF3                 0.014   WAS/WASL interacting protein family, member 3 [Homo...
DIAPH1                0.013   diaphanous 1 isoform 2 
DIAPH1                0.013   diaphanous 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press