Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 42542398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42542398 acidic chitinase isoform a [Homo sapiens]
(368 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|133893286 acidic chitinase isoform c [Homo sapiens] 781 0.0
gi|42542398 acidic chitinase isoform a [Homo sapiens] 781 0.0
gi|4502809 chitotriosidase [Homo sapiens] 376 e-104
gi|68533260 chitinase 3-like 2 isoform c [Homo sapiens] 278 7e-75
gi|68533253 chitinase 3-like 2 isoform b [Homo sapiens] 278 7e-75
gi|68533255 chitinase 3-like 2 isoform a [Homo sapiens] 278 7e-75
gi|58386720 oviductal glycoprotein 1 precursor [Homo sapiens] 269 3e-72
gi|144226251 chitinase 3-like 1 [Homo sapiens] 266 3e-71
gi|4758092 chitobiase, di-N-acetyl- [Homo sapiens] 65 7e-11
gi|67782356 corneodesmosin precursor [Homo sapiens] 39 0.010
gi|122937309 leucine rich repeat containing 4B [Homo sapiens] 36 0.063
gi|4503493 early growth response 1 [Homo sapiens] 35 0.11
gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo sa... 34 0.18
gi|55750053 atrophin-1 [Homo sapiens] 33 0.41
gi|55750041 atrophin-1 [Homo sapiens] 33 0.41
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 33 0.41
gi|38788260 bromodomain PHD finger transcription factor isoform ... 33 0.53
gi|38788274 bromodomain PHD finger transcription factor isoform ... 33 0.53
gi|45827771 autoantigen RCD8 [Homo sapiens] 33 0.53
gi|46358366 zinc finger protein 746 [Homo sapiens] 33 0.53
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens] 32 0.69
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 32 0.91
gi|149363700 syntaxin binding protein 5-like [Homo sapiens] 32 0.91
gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens] 32 1.2
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 32 1.2
gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 32 1.2
gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 32 1.2
gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapi... 32 1.2
gi|116235480 leucine zipper transcription regulator 2 [Homo sapi... 31 1.5
>gi|133893286 acidic chitinase isoform c [Homo sapiens]
Length = 476
Score = 781 bits (2018), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ
Sbjct: 109 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 168
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL
Sbjct: 169 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 228
Query: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA
Sbjct: 229 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 288
Query: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW
Sbjct: 289 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 348
Query: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP 300
LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP
Sbjct: 349 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP 408
Query: 301 SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT 360
SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT
Sbjct: 409 SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT 468
Query: 361 SCDCCNWA 368
SCDCCNWA
Sbjct: 469 SCDCCNWA 476
>gi|42542398 acidic chitinase isoform a [Homo sapiens]
Length = 368
Score = 781 bits (2018), Expect = 0.0
Identities = 368/368 (100%), Positives = 368/368 (100%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ
Sbjct: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL
Sbjct: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
Query: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA
Sbjct: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
Query: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW
Sbjct: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
Query: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP 300
LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP
Sbjct: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAP 300
Query: 301 SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT 360
SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT
Sbjct: 301 SGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQAGLVFDT 360
Query: 361 SCDCCNWA 368
SCDCCNWA
Sbjct: 361 SCDCCNWA 368
>gi|4502809 chitotriosidase [Homo sapiens]
Length = 466
Score = 376 bits (966), Expect = e-104
Identities = 180/374 (48%), Positives = 241/374 (64%), Gaps = 24/374 (6%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MV+T NRQTF+ S I+FLR+Y FDGLD DWEYPGS+GSP DK FT LVQ++ AF+Q
Sbjct: 109 MVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQ 168
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
EA+ K RL+++AAV AG + + +GYE+ +++Q LD++++M YD HGSWE TG NSPL
Sbjct: 169 EAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPL 228
Query: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
YK ++G+ A LNVD + W G PA KLI+G PTYG +F L++ S+T +GAP +G+
Sbjct: 229 YKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGS 288
Query: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
G GP+ KE G+ AYYE+C++ GAT+ Q+VPY ++ N WVG+D+++SF K +
Sbjct: 289 GTPGPFTKEGGMLAYYEVCSW--KGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSY 346
Query: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKAL-------GLQSASCTAPAQPI 293
LK GGAMVWA+DLDDF G CNQG++PLI TL++ L G P QP
Sbjct: 347 LKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQELSLPYLPSGTPELEVPKPGQPS 406
Query: 294 EPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYPVANNRNAFWHCVNGVTYQQNCQ 353
EP G S G FC +A+GLYP R++F+ C G +QQ+C
Sbjct: 407 EP---------------EHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCP 451
Query: 354 AGLVFDTSCDCCNW 367
GLVF SC CC W
Sbjct: 452 TGLVFSNSCKCCTW 465
>gi|68533260 chitinase 3-like 2 isoform c [Homo sapiens]
Length = 311
Score = 278 bits (710), Expect = 7e-75
Identities = 136/282 (48%), Positives = 192/282 (68%), Gaps = 9/282 (3%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MV + +R FI S+I FLR + FDGLD W YP + ++ H FTVL+ E+ EAF++
Sbjct: 35 MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQK----ENTH-FTVLIHELAEAFQK 89
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG--YTGENS 118
+ + K RL++TA V+AG I + Y++ +L++ LD+I+++++D HGSWE TG NS
Sbjct: 90 DFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNS 149
Query: 119 PLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTS 178
PL K D G ++Y NV+Y + YW G P+EK+++G PTYGH+F L++ T +GAP S
Sbjct: 150 PLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPAS 208
Query: 179 GAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKA 238
G G AGP + SG AYYEIC FLK GA Q+VPYA +GN WVGYD++KS + K
Sbjct: 209 GPGAAGPITESSGFLAYYEICQFLK-GAKITRLQDQQVPYAVKGNQWVGYDDVKSMETKV 267
Query: 239 QWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALG 280
Q+LK+ GGAM+W+ID+DDFTG CNQG +PL+ +K++LG
Sbjct: 268 QFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSLG 309
>gi|68533253 chitinase 3-like 2 isoform b [Homo sapiens]
Length = 380
Score = 278 bits (710), Expect = 7e-75
Identities = 136/282 (48%), Positives = 192/282 (68%), Gaps = 9/282 (3%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MV + +R FI S+I FLR + FDGLD W YP + ++ H FTVL+ E+ EAF++
Sbjct: 104 MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQK----ENTH-FTVLIHELAEAFQK 158
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG--YTGENS 118
+ + K RL++TA V+AG I + Y++ +L++ LD+I+++++D HGSWE TG NS
Sbjct: 159 DFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNS 218
Query: 119 PLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTS 178
PL K D G ++Y NV+Y + YW G P+EK+++G PTYGH+F L++ T +GAP S
Sbjct: 219 PLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPAS 277
Query: 179 GAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKA 238
G G AGP + SG AYYEIC FLK GA Q+VPYA +GN WVGYD++KS + K
Sbjct: 278 GPGAAGPITESSGFLAYYEICQFLK-GAKITRLQDQQVPYAVKGNQWVGYDDVKSMETKV 336
Query: 239 QWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALG 280
Q+LK+ GGAM+W+ID+DDFTG CNQG +PL+ +K++LG
Sbjct: 337 QFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSLG 378
>gi|68533255 chitinase 3-like 2 isoform a [Homo sapiens]
Length = 390
Score = 278 bits (710), Expect = 7e-75
Identities = 136/282 (48%), Positives = 192/282 (68%), Gaps = 9/282 (3%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
MV + +R FI S+I FLR + FDGLD W YP + ++ H FTVL+ E+ EAF++
Sbjct: 114 MVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQK----ENTH-FTVLIHELAEAFQK 168
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG--YTGENS 118
+ + K RL++TA V+AG I + Y++ +L++ LD+I+++++D HGSWE TG NS
Sbjct: 169 DFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNS 228
Query: 119 PLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTS 178
PL K D G ++Y NV+Y + YW G P+EK+++G PTYGH+F L++ T +GAP S
Sbjct: 229 PLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPAS 287
Query: 179 GAGPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKA 238
G G AGP + SG AYYEIC FLK GA Q+VPYA +GN WVGYD++KS + K
Sbjct: 288 GPGAAGPITESSGFLAYYEICQFLK-GAKITRLQDQQVPYAVKGNQWVGYDDVKSMETKV 346
Query: 239 QWLKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALG 280
Q+LK+ GGAM+W+ID+DDFTG CNQG +PL+ +K++LG
Sbjct: 347 QFLKNLNLGGAMIWSIDMDDFTGKSCNQGPYPLVQAVKRSLG 388
>gi|58386720 oviductal glycoprotein 1 precursor [Homo sapiens]
Length = 678
Score = 269 bits (688), Expect = 3e-72
Identities = 138/291 (47%), Positives = 182/291 (62%), Gaps = 6/291 (2%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
M+ST NR+ FI SVI LR ++FDGLD + YPG RGSP D+ F L++E+ AF +
Sbjct: 110 MLSTFANREKFIASVISLLRTHDFDGLDLFFLYPGLRGSPMHDRWTFLFLIEELLFAFRK 169
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
EA +PRL+++AAV+ +Q+ Y++ L + LD+I+V++YDLHGSWE +TG NSPL
Sbjct: 170 EALLTMRPRLLLSAAVSGVPHIVQTSYDVRFLGRLLDFINVLSYDLHGSWERFTGHNSPL 229
Query: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
+ P D S+A Y MNYW+ GAP+EKLI+G PTYG F L S G+ A G
Sbjct: 230 FSLPEDPKSSA-----YAMNYWRKLGAPSEKLIMGIPTYGRTFRLLKASKNGLQARAIGP 284
Query: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
G Y K+ G AY+EIC+F+ GA + W Q VPYA +G WVGYDN SF KA +
Sbjct: 285 ASPGKYTKQEGFLAYFEICSFVW-GAKKHWIDYQYVPYANKGKEWVGYDNAISFSYKAWF 343
Query: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQ 291
++ FGGAMVW +D+DD GTFC G FPL+ L L S T+ Q
Sbjct: 344 IRREHFGGAMVWTLDMDDVRGTFCGTGPFPLVYVLNDILVRAEFSSTSLPQ 394
>gi|144226251 chitinase 3-like 1 [Homo sapiens]
Length = 383
Score = 266 bits (679), Expect = 3e-71
Identities = 138/280 (49%), Positives = 187/280 (66%), Gaps = 9/280 (3%)
Query: 1 MVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQ 60
+ S ++R+TFI SV FLR + FDGLD W YPG R DK FT L++EM+ F +
Sbjct: 109 IASNTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGRR-----DKQHFTTLIKEMKAEFIK 163
Query: 61 EAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPL 120
EA Q K +L+++AA++AG I S Y+I ++SQ+LD+I +MTYD HG+W G TG +SPL
Sbjct: 164 EA-QPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPL 222
Query: 121 YKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGA 180
++ D + + N DY + Y GAPA KL++G PT+G +F L++ S TG+GAP SG
Sbjct: 223 FRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLAS-SETGVGAPISGP 281
Query: 181 GPAGPYAKESGIWAYYEICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQW 240
G G + KE+G AYYEIC FL+ GAT Q+VPYA +GN WVGYD+ +S K Q+
Sbjct: 282 GIPGRFTKEAGTLAYYEICDFLR-GATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQY 340
Query: 241 LKHNKFGGAMVWAIDLDDFTGTFCNQG-KFPLISTLKKAL 279
LK + GAMVWA+DLDDF G+FC Q +FPL + +K AL
Sbjct: 341 LKDRQLAGAMVWALDLDDFQGSFCGQDLRFPLTNAIKDAL 380
>gi|4758092 chitobiase, di-N-acetyl- [Homo sapiens]
Length = 385
Score = 65.5 bits (158), Expect = 7e-11
Identities = 67/269 (24%), Positives = 111/269 (41%), Gaps = 33/269 (12%)
Query: 5 PENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQ 64
P R ++I + + DG++ D E + SP D T LV+E ++F +E +
Sbjct: 116 PAFRASWIAQKLNLAKTQYMDGINIDIEQEVNCLSPEYDA--LTALVKETTDSFHREIEG 173
Query: 65 INKPRLMVTAAVAAGISNIQSG-YEIPQLSQYLDYIHVMTYDLHGS-W-EGYTGENSPLY 121
VT VA NI Y ++ D++ VM+YD W E N+P
Sbjct: 174 SQ-----VTFDVAWSPKNIDRRCYNYTGIADACDFLFVMSYDEQSQIWSECIAAANAPYN 228
Query: 122 KYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAG 181
+ T TG N Y+ + +KL++G P YG+++ N S +
Sbjct: 229 Q--TLTGYNDYIKMSI----------NPKKLVMGVPWYGYDYTCLNLSEDHVCTIAKVPF 276
Query: 182 PAGPYAKESGIWAYYEICTFLKNGATQG--WDAPQEVPY-------AYQGNVWVGYDNIK 232
P + +G Y+ N + G WD Q PY + VW YDN +
Sbjct: 277 RGAPCSDAAGRQVPYKTIMKQINSSISGNLWDKDQRAPYYNYKDPAGHFHQVW--YDNPQ 334
Query: 233 SFDIKAQWLKHNKFGGAMVWAIDLDDFTG 261
S +KA ++++ + G +W + D++G
Sbjct: 335 SISLKATYIQNYRLRGIGMWNANCLDYSG 363
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 38.5 bits (88), Expect = 0.010
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 271 LISTLKKALGLQSASCTAPAQPIEPITAAPSGSGNGSG-SSSSGGSSGGSGFCAVRANG 328
L TL K++G S C P + P +G G+ SG SS SG SS GS + R++G
Sbjct: 27 LPGTLAKSIGTFSDPCKDPTRITSPNDPCLTGKGDSSGFSSYSGSSSSGSSISSARSSG 85
>gi|122937309 leucine rich repeat containing 4B [Homo sapiens]
Length = 713
Score = 35.8 bits (81), Expect = 0.063
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 280 GLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSG 320
G +AS T ++P+ A +GSG G G SGG GGSG
Sbjct: 443 GNTTASATLNVSAVDPVAAGGTGSG-GGGPGGSGGVGGGSG 482
>gi|4503493 early growth response 1 [Homo sapiens]
Length = 543
Score = 35.0 bits (79), Expect = 0.11
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 267 GKFPLISTLKKALGLQSASCTAPAQP-IEPITAAPSGSGNGSGSSSSGGSSGGSG 320
G FP T+ L+ + P AP GSG+ S SSSSGG GG G
Sbjct: 21 GSFPHSPTMDNYPKLEEMMLLSNGAPQFLGAAGAPEGSGSNSSSSSSGGGGGGGG 75
>gi|40538799 ataxin-1 ubiquitin-like interacting protein [Homo
sapiens]
Length = 601
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 283 SASCTAPAQPIEPITAAPSGS-----GNGSGSSSSGGSSGGSG 320
SA T PA P P + SGS G+GS SS GG S G+G
Sbjct: 106 SAPSTTPASPATPAQPSTSGSASSDAGSGSRRSSGGGPSPGAG 148
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.1 bits (74), Expect = 0.41
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 281 LQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYP 331
L AS +APA P+ ++ S S + SSSS SS S F A +A YP
Sbjct: 359 LPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYP 409
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.1 bits (74), Expect = 0.41
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 281 LQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYP 331
L AS +APA P+ ++ S S + SSSS SS S F A +A YP
Sbjct: 359 LPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYP 409
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 33.1 bits (74), Expect = 0.41
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 292 PIEPITAAPSGSGNGSGSSSSGGSSGGSG 320
PI P ++PS S N G GG GG G
Sbjct: 39 PIAPSASSPSSSSNAGGGGGGGGGGGGGG 67
Score = 29.3 bits (64), Expect = 5.9
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 13/61 (21%)
Query: 278 ALGLQSASCTAPAQPI--EPITAAPSGSGNGSGS-----------SSSGGSSGGSGFCAV 324
AL S +AP P P +++ +G G G G SSS GSSGG G A+
Sbjct: 28 ALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGGGGGGGGGGRSSSSSSSGSSGGGGSEAM 87
Query: 325 R 325
R
Sbjct: 88 R 88
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 32.7 bits (73), Expect = 0.53
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 280 GLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGG 318
G S P P P T+AP G G G +GG GG
Sbjct: 70 GSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGGG 108
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 32.7 bits (73), Expect = 0.53
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 280 GLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGG 318
G S P P P T+AP G G G +GG GG
Sbjct: 70 GSSSRRKPPPPPPAPPSTSAPGRGGRGGGGGRTGGGGGG 108
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 32.7 bits (73), Expect = 0.53
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 289 PAQPIEPITAAPSGSGNGSGSSSSGGSS 316
P+ ++ ITA+PS S +GS SSSS SS
Sbjct: 601 PSASLQQITASPSSSSSGSSSSSSSSSS 628
>gi|46358366 zinc finger protein 746 [Homo sapiens]
Length = 644
Score = 32.7 bits (73), Expect = 0.53
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 275 LKKALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSG 320
L+ +L SC AP SG G G G S SGG GGSG
Sbjct: 464 LQVSLSAHQRSCGAPDG---------SGPGTGGGGSGSGGGGGGSG 500
>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
Length = 532
Score = 32.3 bits (72), Expect = 0.69
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 273 STLKKALGLQSASCTAPAQPIEPIT--------AAPSGSGNGSGSSSSGGSSGGSG 320
S L A +A+ A A + + A GSG GSGS GG +GG G
Sbjct: 451 SNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGG 506
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 32.0 bits (71), Expect = 0.91
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 280 GLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSG 320
G Q S +A A P P+ A S S +GS SS GG SG +G
Sbjct: 30 GGQRNSTSARAPPPPPL-APSSSSSSGSSGSSGGGGSGSAG 69
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 32.0 bits (71), Expect = 0.91
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 292 PIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVR 325
P + + P G G G GSS GG +GG A R
Sbjct: 10 PAKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACR 43
>gi|149363700 syntaxin binding protein 5-like [Homo sapiens]
Length = 1186
Score = 32.0 bits (71), Expect = 0.91
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 293 IEPITAAPSGSGNGSGSSSSGGSSGGS 319
++ +TA+ GSG+ SGS+S GG+ GS
Sbjct: 10 LDGLTASSPGSGSSSGSNSGGGAGSGS 36
>gi|239582720 ATG9 autophagy related 9 homolog B [Homo sapiens]
Length = 924
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 278 ALGLQSASCTAPAQPIEPITAAPSGSGNGSGSSSSGGSSGGSGFCAVRANGLYP 331
A + S C++P+QP P PS S +GS +SS G+ +A L+P
Sbjct: 855 AASILSRPCSSPSQPPSPDEEKPSWSSDGSSPASSPRQQWGT----QKARNLFP 904
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 227 GYDNIKSFDIKA-QWLKHNKFGGAMVWAIDLDDFTGT--FCNQGKFPLISTLKKALGLQS 283
G +++ +K+ QWL+ K G A++L T FC + T+ + L
Sbjct: 6 GKESVSLLQMKSVQWLQ--KVGCLKKRAVNLWFLTSCTFFCRRAPLRAKRTVLSSPSLGG 63
Query: 284 ASCTAPAQPIEPITAAPSGSGNGS-GSSSSG-GSSGGSGFCAVRANGLYPVANN 335
A + + +P G+G G+ G ++G G +GG G C R G +P A +
Sbjct: 64 GPAAGSAI-LRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGS 116
>gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo
sapiens]
Length = 304
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 227 GYDNIKSFDIKA-QWLKHNKFGGAMVWAIDLDDFTGT--FCNQGKFPLISTLKKALGLQS 283
G +++ +K+ QWL+ K G A++L T FC + T+ + L
Sbjct: 6 GKESVSLLQMKSVQWLQ--KVGCLKKRAVNLWFLTSCTFFCRRAPLRAKRTVLSSPSLGG 63
Query: 284 ASCTAPAQPIEPITAAPSGSGNGS-GSSSSG-GSSGGSGFCAVRANGLYPVANN 335
A + + +P G+G G+ G ++G G +GG G C R G +P A +
Sbjct: 64 GPAAGSAI-LRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGS 116
>gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo
sapiens]
Length = 304
Score = 31.6 bits (70), Expect = 1.2
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 227 GYDNIKSFDIKA-QWLKHNKFGGAMVWAIDLDDFTGT--FCNQGKFPLISTLKKALGLQS 283
G +++ +K+ QWL+ K G A++L T FC + T+ + L
Sbjct: 6 GKESVSLLQMKSVQWLQ--KVGCLKKRAVNLWFLTSCTFFCRRAPLRAKRTVLSSPSLGG 63
Query: 284 ASCTAPAQPIEPITAAPSGSGNGS-GSSSSG-GSSGGSGFCAVRANGLYPVANN 335
A + + +P G+G G+ G ++G G +GG G C R G +P A +
Sbjct: 64 GPAAGSAI-LRAGSRSPRGAGPGAAGPRAAGRGGAGGGGRCCTRGRGRFPCAGS 116
>gi|194248068 synaptic Ras GTPase activating protein 1 [Homo sapiens]
Length = 1343
Score = 31.6 bits (70), Expect = 1.2
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 289 PAQPIEPITAAPSGSGNGSGSSSSGGSSG 317
P I P APSG G GSG S GG G
Sbjct: 1035 PQITIGPQRPAPSGPGGGSGGGSGGGGGG 1063
Score = 30.0 bits (66), Expect = 3.4
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 295 PITAAPSGSGN--GSGSSSSGGSSGGSG 320
P+T P+GSG G GS GGS GGSG
Sbjct: 364 PVTL-PTGSGGSGGMGSGGGGGSGGGSG 390
>gi|116235480 leucine zipper transcription regulator 2 [Homo
sapiens]
Length = 1060
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 280 GLQSASCTAPAQPIEPITAAPS---GSGNGSGSSSSGGSSGGSG 320
GL + +P P P +A S G G G GS+SSGG++ G+G
Sbjct: 953 GLGLSLTPSPESPPLPDVSAFSRGRGGGEGRGSASSGGAAAGAG 996
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,213,133
Number of Sequences: 37866
Number of extensions: 824899
Number of successful extensions: 7086
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 6051
Number of HSP's gapped (non-prelim): 820
length of query: 368
length of database: 18,247,518
effective HSP length: 104
effective length of query: 264
effective length of database: 14,309,454
effective search space: 3777695856
effective search space used: 3777695856
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.