Guide to the Human Genome
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Name: CTBS Sequence: fasta or formatted (385aa) NCBI GI: 4758092
Description:

chitobiase, di-N-acetyl-

Referenced in:

Lysosomes and Related Organelles
Ovary, Uterus and Placenta

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         32           3
 C cysteine            3.1         12           1
 D aspartate           7.0         27           1
 E glutamate           4.2         16           2
 F phenylalanine       2.9         11           1
 G glycine             5.2         20           1
 H histidine           1.8          7           2
 I isoleucine          5.7         22           2
 K lysine              5.7         22           2
 L leucine             8.3         32           2
 M methionine          2.3          9           1
 N asparagine          4.4         17           1
 P proline             5.7         22           2
 Q glutamine           4.9         19           2
 R arginine            4.7         18           2
 S serine              6.8         26           2
 T threonine           4.7         18           2
 V valine              5.7         22           2
 W tryptophan          2.9         11           1
 Y tyrosine            5.7         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chitobiase, di-N-acetyl- 
CHIA                  0.051   acidic chitinase isoform c 
CHIA                  0.051   acidic chitinase isoform a 
CHI3L2                0.037   chitinase 3-like 2 isoform c 
CHI3L2                0.037   chitinase 3-like 2 isoform b 
CHI3L2                0.037   chitinase 3-like 2 isoform a 
CHIT1                 0.029   chitotriosidase 
OVGP1                 0.027   oviductal glycoprotein 1 precursor 
CHI3L1                0.026   chitinase 3-like 1 
DMTF1                 0.009   cyclin D binding myb-like transcription factor 1 is...
DMTF1                 0.009   cyclin D binding myb-like transcription factor 1 is...
DMTF1                 0.009   cyclin D binding myb-like transcription factor 1 is...
KRT84                 0.008   keratin, hair, basic, 4 
CHID1                 0.008   chitinase domain containing 1 isoform b 
CHID1                 0.008   chitinase domain containing 1 isoform a 
CHID1                 0.008   chitinase domain containing 1 isoform a 
CHID1                 0.008   chitinase domain containing 1 isoform a 
KRT9                  0.008   keratin 9 
LRP5                  0.006   low density lipoprotein receptor-related protein 5 ...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
NEDD1                 0.005   neural precursor cell expressed, developmentally dow...
NEDD1                 0.005   neural precursor cell expressed, developmentally do...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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