Guide to the Human Genome
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Name: CHI3L2 Sequence: fasta or formatted (380aa) NCBI GI: 68533253
Description:

chitinase 3-like 2 isoform b

Referenced in:

Ovary, Uterus and Placenta

Other entries for this name:
alt prot [390aa] chitinase 3-like 2 isoform a
alt prot [311aa] chitinase 3-like 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         21           2
 C cysteine            1.1          4           1
 D aspartate           5.3         20           2
 E glutamate           4.5         17           1
 F phenylalanine       5.3         20           1
 G glycine             8.2         31           2
 H histidine           2.4          9           1
 I isoleucine          6.1         23           2
 K lysine              7.6         29           1
 L leucine             9.2         35           3
 M methionine          2.6         10           1
 N asparagine          4.7         18           2
 P proline             4.5         17           1
 Q glutamine           4.5         17           2
 R arginine            2.1          8           1
 S serine              9.2         35           2
 T threonine           5.5         21           2
 V valine              5.3         20           2
 W tryptophan          2.1          8           1
 Y tyrosine            4.5         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chitinase 3-like 2 isoform b 
CHI3L2                0.989   chitinase 3-like 2 isoform a 
CHI3L2                0.811   chitinase 3-like 2 isoform c 
CHIT1                 0.507   chitotriosidase 
CHI3L1                0.494   chitinase 3-like 1 
CHIA                  0.470   acidic chitinase isoform c 
OVGP1                 0.407   oviductal glycoprotein 1 precursor 
CHIA                  0.335   acidic chitinase isoform a 
CTBS                  0.038   chitobiase, di-N-acetyl- 
CHID1                 0.013   chitinase domain containing 1 isoform b 
CHID1                 0.013   chitinase domain containing 1 isoform a 
CHID1                 0.013   chitinase domain containing 1 isoform a 
CHID1                 0.013   chitinase domain containing 1 isoform a 
F5                    0.008   coagulation factor V precursor 
MED9                  0.005   mediator complex subunit 9 
VSTM2A                0.005   V-set and transmembrane domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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