Guide to the Human Genome
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Name: C1orf113 Sequence: fasta or formatted (756aa) NCBI GI: 242117953
Description:

SH3 domain-containing protein C1orf113 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {645aa} SH3 domain-containing protein C1orf113 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         45           1
 C cysteine            0.7          5           1
 D aspartate           4.1         31           2
 E glutamate          11.6         88           3
 F phenylalanine       1.9         14           1
 G glycine             5.4         41           2
 H histidine           1.5         11           2
 I isoleucine          2.2         17           2
 K lysine              7.8         59           2
 L leucine             7.5         57           2
 M methionine          1.5         11           1
 N asparagine          2.0         15           1
 P proline            13.2        100           4
 Q glutamine           4.5         34           2
 R arginine            6.7         51           3
 S serine              8.3         63           2
 T threonine           5.8         44           2
 V valine              6.7         51           2
 W tryptophan          1.1          8           2
 Y tyrosine            1.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 domain-containing protein C1orf113 isoform 1 [H... 
C1orf113              0.848   SH3 domain-containing protein C1orf113 isoform 2 [H...
CD2AP                 0.087   CD2-associated protein 
SH3KBP1               0.057   SH3-domain kinase binding protein 1 isoform a 
NEFH                  0.056   neurofilament, heavy polypeptide 200kDa 
TTN                   0.050   titin isoform N2-A 
SH3D19                0.050   SH3 domain containing 19 isoform c 
SH3D19                0.050   SH3 domain containing 19 isoform b 
SH3D19                0.050   SH3 domain containing 19 isoform a 
ITSN1                 0.048   intersectin 1 isoform ITSN-s 
ITSN1                 0.048   intersectin 1 isoform ITSN-l 
DNMBP                 0.048   dynamin binding protein 
SORBS1                0.044   sorbin and SH3 domain containing 1 isoform 7 
SORBS1                0.044   sorbin and SH3 domain containing 1 isoform 6 
SORBS1                0.044   sorbin and SH3 domain containing 1 isoform 2 
SORBS1                0.044   sorbin and SH3 domain containing 1 isoform 1 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 8 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 7 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 6 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 5 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 4 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 3 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 2 
SORBS2                0.042   sorbin and SH3 domain containing 2 isoform 1 
SORBS1                0.041   sorbin and SH3 domain containing 1 isoform 5 
PRG4                  0.039   proteoglycan 4 isoform D 
PRG4                  0.039   proteoglycan 4 isoform C 
PRG4                  0.039   proteoglycan 4 isoform B 
PRG4                  0.039   proteoglycan 4 isoform A 
FSCB                  0.039   fibrous sheath CABYR binding protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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