Search of human proteins with 40549411

Search of human proteins with 40549411

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40549411 glial cell derived neurotrophic factor isoform 2
precursor [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40549411 glial cell derived neurotrophic factor isoform 2 pre...   381   e-106
gi|4503975 glial cell derived neurotrophic factor isoform 1 prep...   365   e-102
gi|40549413 glial cell derived neurotrophic factor isoform 3 [Ho...   241   3e-64
gi|4758826 neurturin preproprotein [Homo sapiens]                     100   9e-22
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]       69   3e-12
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho...    69   3e-12
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho...    69   3e-12
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho...    69   3e-12
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho...    69   3e-12
gi|4758974 persephin precursor [Homo sapiens]                          68   4e-12
gi|7705308 growth differentiation factor 2 [Homo sapiens]              33   0.11 
gi|4503969 growth differentiation factor 5 preproprotein [Homo s...    32   0.41 
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is...    29   2.0  
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is...    29   2.0  
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is...    29   2.0  
gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo s...    29   2.6  
gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo sa...    29   2.6  
gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens]                      29   2.6  
gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]             28   4.5  
gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo sapi...    28   4.5  
gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]            28   5.9  
gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]             28   5.9  
gi|88974375 PREDICTED: hypothetical protein [Homo sapiens]             28   5.9  
gi|56237021 fibrillin 3 precursor [Homo sapiens]                       28   5.9  
gi|41281808 harmonin isoform b3 [Homo sapiens]                         27   7.7  
gi|71480164 harmonin isoform a [Homo sapiens]                          27   7.7  

>gi|40549411 glial cell derived neurotrophic factor isoform 2
           precursor [Homo sapiens]
          Length = 185

 Score =  381 bits (978), Expect = e-106
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MKLWDVVAVCLVLLHTASAFPLPAANMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVL 60
           MKLWDVVAVCLVLLHTASAFPLPAANMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVL
Sbjct: 1   MKLWDVVAVCLVLLHTASAFPLPAANMPEDYPDQFDDVMDFIQATIKRLKRSPDKQMAVL 60

Query: 61  PRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCS 120
           PRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCS
Sbjct: 61  PRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCS 120

Query: 121 GSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAK 180
           GSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAK
Sbjct: 121 GSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAK 180

Query: 181 RCGCI 185
           RCGCI
Sbjct: 181 RCGCI 185


>gi|4503975 glial cell derived neurotrophic factor isoform 1
           preproprotein [Homo sapiens]
          Length = 211

 Score =  365 bits (938), Expect = e-102
 Identities = 184/211 (87%), Positives = 185/211 (87%), Gaps = 26/211 (12%)

Query: 1   MKLWDVVAVCLVLLHTASAFPLPA--------------------------ANMPEDYPDQ 34
           MKLWDVVAVCLVLLHTASAFPLPA                          +NMPEDYPDQ
Sbjct: 1   MKLWDVVAVCLVLLHTASAFPLPAGKRPPEAPAEDRSLGRRRAPFALSSDSNMPEDYPDQ 60

Query: 35  FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL 94
           FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL
Sbjct: 61  FDDVMDFIQATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVL 120

Query: 95  TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR 154
           TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR
Sbjct: 121 TAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCR 180

Query: 155 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 185
           PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
Sbjct: 181 PIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 211


>gi|40549413 glial cell derived neurotrophic factor isoform 3 [Homo
           sapiens]
          Length = 133

 Score =  241 bits (615), Expect = 3e-64
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 71  AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 130
           AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY
Sbjct: 19  AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 78

Query: 131 DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 185
           DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
Sbjct: 79  DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 133


>gi|4758826 neurturin preproprotein [Homo sapiens]
          Length = 197

 Score =  100 bits (248), Expect = 9e-22
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 5/115 (4%)

Query: 72  ANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYD 131
           A P   R + R G R     C L  + + V++LGLGY + E ++FRYC+G+C+AA   YD
Sbjct: 87  AGPRRRRARARLGARP----CGLRELEVRVSELGLGYASDETVLFRYCAGACEAAARVYD 142

Query: 132 KILKNLSRNRRLVSDKV-GQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 185
             L+ L + RRL  ++V  Q CCRP A++D++SFLD +  YH + + SA+ C C+
Sbjct: 143 LGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVSFLDAHSRYHTVHELSARECACV 197


>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
          Length = 237

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 53  PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
           P    + LPR  R  +A         G G R +    RGC L +  + V  LGLG+ + E
Sbjct: 109 PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 160

Query: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
            + FR+CSGSC  A + +D  L +L     L     S  V Q CCRP  + + +SF+D N
Sbjct: 161 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 219

Query: 169 LVYHILRKHSAKRCGCI 185
             +  + + SA  CGC+
Sbjct: 220 STWRTVDRLSATACGCL 236


>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 53  PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
           P    + LPR  R  +A         G G R +    RGC L +  + V  LGLG+ + E
Sbjct: 92  PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 143

Query: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
            + FR+CSGSC  A + +D  L +L     L     S  V Q CCRP  + + +SF+D N
Sbjct: 144 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 202

Query: 169 LVYHILRKHSAKRCGCI 185
             +  + + SA  CGC+
Sbjct: 203 STWRTVDRLSATACGCL 219


>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 53  PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
           P    + LPR  R  +A         G G R +    RGC L +  + V  LGLG+ + E
Sbjct: 100 PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 151

Query: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
            + FR+CSGSC  A + +D  L +L     L     S  V Q CCRP  + + +SF+D N
Sbjct: 152 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 210

Query: 169 LVYHILRKHSAKRCGCI 185
             +  + + SA  CGC+
Sbjct: 211 STWRTVDRLSATACGCL 227


>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
           sapiens]
          Length = 220

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 53  PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
           P    + LPR  R  +A         G G R +    RGC L +  + V  LGLG+ + E
Sbjct: 92  PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 143

Query: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
            + FR+CSGSC  A + +D  L +L     L     S  V Q CCRP  + + +SF+D N
Sbjct: 144 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 202

Query: 169 LVYHILRKHSAKRCGCI 185
             +  + + SA  CGC+
Sbjct: 203 STWRTVDRLSATACGCL 219


>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
           sapiens]
          Length = 228

 Score = 68.6 bits (166), Expect = 3e-12
 Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 13/137 (9%)

Query: 53  PDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 112
           P    + LPR  R  +A         G G R +    RGC L +  + V  LGLG+ + E
Sbjct: 100 PPAPPSALPRGGRAARAG--------GPGSRARAAGARGCRLRSQLVPVRALGLGHRSDE 151

Query: 113 ELIFRYCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDN 168
            + FR+CSGSC  A + +D  L +L     L     S  V Q CCRP  + + +SF+D N
Sbjct: 152 LVRFRFCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVN 210

Query: 169 LVYHILRKHSAKRCGCI 185
             +  + + SA  CGC+
Sbjct: 211 STWRTVDRLSATACGCL 227


>gi|4758974 persephin precursor [Homo sapiens]
          Length = 156

 Score = 68.2 bits (165), Expect = 4e-12
 Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)

Query: 83  RGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCD-AAETTYDKILKNLSRNR 141
           R +R  +  C L ++ L+V +LGLGY ++E++IFRYC+GSC   A T +   L  L    
Sbjct: 57  RLRRALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQG 116

Query: 142 RLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGC 184
           R      G  CCRP  +  D++FLDD   +  L + SA  CGC
Sbjct: 117 R----AHGGPCCRPTRY-TDVAFLDDRHRWQRLPQLSAAACGC 154


>gi|7705308 growth differentiation factor 2 [Homo sapiens]
          Length = 429

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 28/159 (17%)

Query: 43  QATIKRLKRSPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVT 102
           ++ +K+L +    +       E      AA    +R   R+   G    C  T++ +N  
Sbjct: 281 ESVLKKLSKDGSTEAGESSHEEDTDGHVAAGSTLAR---RKRSAGAGSHCQKTSLRVNFE 337

Query: 103 DLGLG--------YETKEELIFRYCSGSC-----DAAETTYDKILKNLSRNRRLVSDKVG 149
           D+G          YE  E      C G C     D    T   I++ L   +     KVG
Sbjct: 338 DIGWDSWIIAPKEYEAYE------CKGGCFFPLADDVTPTKHAIVQTLVHLK--FPTKVG 389

Query: 150 QACCRPIAFDDDLSFLDDNLVYHILRKH----SAKRCGC 184
           +ACC P           D++    L+ H    S   CGC
Sbjct: 390 KACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGC 428


>gi|4503969 growth differentiation factor 5 preproprotein [Homo
           sapiens]
          Length = 501

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 17/132 (12%)

Query: 63  RERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR--YCS 120
           + R R+A  A  +     G+R  +     C   A+H+N  D+G        L +   +C 
Sbjct: 376 QRRKRRAPLATRQ-----GKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCE 430

Query: 121 GSCD-----AAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDD-DLSFLD--DNLVYH 172
           G C+       E T   +++ L  +  +  +     CC P       + F+D  +N+VY 
Sbjct: 431 GLCEFPLRSHLEPTNHAVIQTLMNS--MDPESTPPTCCVPTRLSPISILFIDSANNVVYK 488

Query: 173 ILRKHSAKRCGC 184
                  + CGC
Sbjct: 489 QYEDMVVESCGC 500


>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
           isoform a [Homo sapiens]
          Length = 260

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 63  RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 117
           +E NR+  AA    + G+GR G   +  G V     L A+   +  L +G E   EL   
Sbjct: 9   QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68

Query: 118 YCSGS--CDAA 126
             +GS  C+AA
Sbjct: 69  KANGSAVCEAA 79


>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
           isoform c [Homo sapiens]
          Length = 189

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 63  RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 117
           +E NR+  AA    + G+GR G   +  G V     L A+   +  L +G E   EL   
Sbjct: 9   QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68

Query: 118 YCSGS--CDAA 126
             +GS  C+AA
Sbjct: 69  KANGSAVCEAA 79


>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
           isoform b [Homo sapiens]
          Length = 214

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 63  RERNRQAAAANPENSRGKGRRGQRGKNRGCV-----LTAIHLNVTDLGLGYETKEELIFR 117
           +E NR+  AA    + G+GR G   +  G V     L A+   +  L +G E   EL   
Sbjct: 9   QEENRRRGAAGRRRAHGQGRSGLTPEREGKVKLALLLAAVGATLAVLSVGTEFWVELNTY 68

Query: 118 YCSGS--CDAA 126
             +GS  C+AA
Sbjct: 69  KANGSAVCEAA 79


>gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo
           sapiens]
          Length = 680

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 69  AAAANPENSRGKGRRGQRGKN 89
           +AA N    RG+GRRG RG+N
Sbjct: 563 SAATNKGRGRGRGRRGGRGQN 583


>gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo
           sapiens]
          Length = 708

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 15/21 (71%)

Query: 69  AAAANPENSRGKGRRGQRGKN 89
           +AA N    RG+GRRG RG+N
Sbjct: 563 SAATNKGRGRGRGRRGGRGQN 583


>gi|20336477 B-cell CLL/lymphoma 7C [Homo sapiens]
          Length = 217

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 55 KQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRG 91
          K + V+  +E  R+ A    E SRG+ RRG+    RG
Sbjct: 47 KWVPVVDPQEEERRRAGGGAERSRGRERRGRGASPRG 83


>gi|8922112 carbohydrate sulfotransferase 12 [Homo sapiens]
          Length = 414

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 15/121 (12%)

Query: 4   WDVVAVCLVLLHTASAFPLPAANMPEDYPDQ---------FDDVMD-FIQATIKR--LKR 51
           WD        LHT+ + P     +P   PD+          D+ +D F+ A +K+  L R
Sbjct: 26  WDSAGAAHFYLHTSFSRPHTGPPLPTPGPDRDRELTADSDVDEFLDKFLSAGVKQSDLPR 85

Query: 52  SPDKQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETK 111
              +Q       E + +    +P ++R    +G++   R  VL     N +   L + TK
Sbjct: 86  KETEQPPAPGSMEESVRGYDWSPRDARRSPDQGRQQAERRSVLRGFCANSS---LAFPTK 142

Query: 112 E 112
           E
Sbjct: 143 E 143


>gi|122937301 G protein-coupled receptor 108 isoform 1 [Homo
           sapiens]
          Length = 543

 Score = 28.1 bits (61), Expect = 4.5
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 55  KQMAVLPRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHLNVT-----DLGLGYE 109
           K  A +PR+      +AA+   S     +G  GK++  VL   HLN +      + +G +
Sbjct: 155 KPQATVPRKVDGGGTSAASKPKSTPAVIQGPSGKDKDLVLGLSHLNNSYNFSFHVVIGSQ 214

Query: 110 TKE---ELIFRYCSGSCDAAETTYD 131
            +E    L F  C+ S    E  +D
Sbjct: 215 AEEGQYSLNFHNCNNSVPGKEHPFD 239


>gi|169166958 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 60 LPRRERNRQAAAANPENSRGKGRRGQRGKNR 90
          +P +   R AAAA P  S G+ RRG  G  R
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPR 31


>gi|88980290 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 60 LPRRERNRQAAAANPENSRGKGRRGQRGKNR 90
          +P +   R AAAA P  S G+ RRG  G  R
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPR 31


>gi|88974375 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 54

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 60 LPRRERNRQAAAANPENSRGKGRRGQRGKNR 90
          +P +   R AAAA P  S G+ RRG  G  R
Sbjct: 1  MPGQAPGRAAAAAAPRRSPGRPRRGSGGPPR 31


>gi|56237021 fibrillin 3 precursor [Homo sapiens]
          Length = 2809

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 89   NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV 148
            N  CV  A +L V       + ++ + FR+ +G+C       +++  N++R     S  +
Sbjct: 1627 NYTCVCPAEYLQVNGGNNCMDMRKSVCFRHYNGTCQ------NELAFNVTRKMCCCSYNI 1680

Query: 149  GQACCRP 155
            GQA  RP
Sbjct: 1681 GQAWNRP 1687


>gi|41281808 harmonin isoform b3 [Homo sapiens]
          Length = 899

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 61  PRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHL----NVTDLGLGYETKEELIF 116
           PRR R  +    +  +  G G   + G   GC L   HL        +GL    +   I 
Sbjct: 79  PRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRIN 138

Query: 117 RYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDD 161
            Y   SC     T+++++ NL R ++ VS KV      P+    D
Sbjct: 139 GYSISSC-----THEEVI-NLIRTKKTVSIKVRHIGLIPVKSSPD 177


>gi|71480164 harmonin isoform a [Homo sapiens]
          Length = 552

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 61  PRRERNRQAAAANPENSRGKGRRGQRGKNRGCVLTAIHL----NVTDLGLGYETKEELIF 116
           PRR R  +    +  +  G G   + G   GC L   HL        +GL    +   I 
Sbjct: 79  PRRSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRIN 138

Query: 117 RYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDD 161
            Y   SC     T+++++ NL R ++ VS KV      P+    D
Sbjct: 139 GYSISSC-----THEEVI-NLIRTKKTVSIKVRHIGLIPVKSSPD 177


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,094,039
Number of Sequences: 37866
Number of extensions: 296611
Number of successful extensions: 1153
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1123
Number of HSP's gapped (non-prelim): 27
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.