Guide to the Human Genome
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Name: MRE11A Sequence: fasta or formatted (680aa) NCBI GI: 24234690
Description:

meiotic recombination 11 homolog A isoform 2

Referenced in:

DNases, Recombination, and DNA Repair
Spindle, M phase, and Meiosis

Other entries for this name:
alt prot [708aa] meiotic recombination 11 homolog A isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         32           2
 C cysteine            0.9          6           1
 D aspartate           7.6         52           5
 E glutamate           8.8         60           2
 F phenylalanine       5.7         39           2
 G glycine             5.7         39           2
 H histidine           2.6         18           1
 I isoleucine          5.4         37           2
 K lysine              6.5         44           2
 L leucine             7.8         53           2
 M methionine          2.4         16           1
 N asparagine          5.0         34           1
 P proline             3.5         24           1
 Q glutamine           4.7         32           2
 R arginine            7.2         49           2
 S serine              8.4         57           3
 T threonine           5.0         34           2
 V valine              6.0         41           2
 W tryptophan          0.6          4           1
 Y tyrosine            1.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   meiotic recombination 11 homolog A isoform 2 
MRE11A                0.989   meiotic recombination 11 homolog A isoform 1 
CROP                  0.020   cisplatin resistance-associated overexpressed protei...
CROP                  0.020   cisplatin resistance-associated overexpressed protei...
ZRANB2                0.018   zinc finger protein 265 isoform 1 
ZRANB2                0.018   zinc finger protein 265 isoform 2 
NBPF10                0.014   hypothetical protein LOC100132406 
BAZ1A                 0.014   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.014   bromodomain adjacent to zinc finger domain, 1A isofo...
CENPE                 0.012   centromere protein E 
USP8                  0.011   ubiquitin specific peptidase 8 
USP8                  0.011   ubiquitin specific peptidase 8 
USP8                  0.011   ubiquitin specific peptidase 8 
NBPF11                0.011   hypothetical protein LOC728912 
LOC200030             0.011   neuroblastoma breakpoint family, member 11-like [Ho...
FAM186A               0.011   family with sequence similarity 186, member A [Homo...
LOC100288142          0.011   PREDICTED: hypothetical protein XP_002344485 
NBPF9                 0.011   PREDICTED: neuroblastoma breakpoint family, member ...
TNRC18                0.011   trinucleotide repeat containing 18 
NBPF1                 0.011   hypothetical protein LOC55672 
MSN                   0.011   moesin 
RDX                   0.011   radixin 
MYO6                  0.011   myosin VI 
NBPF20                0.010   hypothetical protein LOC400818 
DSPP                  0.009   dentin sialophosphoprotein preproprotein 
FAM184A               0.009   hypothetical protein LOC79632 isoform 2 
FAM184A               0.009   hypothetical protein LOC79632 isoform 1 
NCOR1                 0.009   nuclear receptor co-repressor 1 
WDR87                 0.009   NYD-SP11 protein 
LMNA                  0.009   lamin A/C isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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