Guide to the Human Genome
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Name: CACNG6 Sequence: fasta or formatted (214aa) NCBI GI: 22027557
Description:

voltage-dependent calcium channel gamma-6 subunit isoform b

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [260aa] voltage-dependent calcium channel gamma-6 subunit isoform a
alt prot [189aa] voltage-dependent calcium channel gamma-6 subunit isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         22           2
 C cysteine            3.3          7           1
 D aspartate           1.4          3           1
 E glutamate           6.1         13           2
 F phenylalanine       4.2          9           2
 G glycine            10.3         22           1
 H histidine           1.9          4           1
 I isoleucine          0.9          2           1
 K lysine              4.2          9           2
 L leucine            14.5         31           4
 M methionine          0.9          2           2
 N asparagine          2.8          6           1
 P proline             5.6         12           3
 Q glutamine           2.3          5           1
 R arginine            8.4         18           3
 S serine              5.1         11           1
 T threonine           6.5         14           2
 V valine              6.1         13           1
 W tryptophan          3.3          7           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-6 subunit is... 
CACNG6                0.948   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.843   voltage-dependent calcium channel gamma-6 subunit is...
CACNG1                0.207   voltage-dependent calcium channel gamma-1 subunit [Ho...
BAT2L                 0.017   HLA-B associated transcript 2-like 
CACNG4                0.014   voltage-dependent calcium channel gamma-4 subunit [Ho...
NKG7                  0.012   natural killer cell group 7 sequence 
GDNF                  0.010   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.010   glial cell derived neurotrophic factor isoform 1 prep...
MPHOSPH9              0.010   M-phase phosphoprotein 9 
PERP                  0.010   PERP, TP53 apoptosis effector 
CACNG2                0.010   voltage-dependent calcium channel gamma-2 subunit [Ho...
LOC100293006          0.007   PREDICTED: hypothetical protein 
LOC100291332          0.007   PREDICTED: hypothetical protein XP_002347440 
LOC100289447          0.007   PREDICTED: hypothetical protein XP_002344275 
TSPO                  0.007   translocator protein isoform PBR 
ADCY4                 0.007   adenylate cyclase 4 
CACNG7                0.007   voltage-dependent calcium channel gamma-7 subunit [H...
LOC100131405          0.007   PREDICTED: hypothetical protein 
LOC100132799          0.007   PREDICTED: hypothetical protein 
BCL7C                 0.007   B-cell CLL/lymphoma 7C 
FBXO24                0.007   F-box only protein 24 isoform 1 
SLC23A3               0.005   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.005   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.005   solute carrier family 23 (nucleobase transporters),...
LOC100292403          0.005   PREDICTED: hypothetical protein 
TMEM114               0.005   PREDICTED: transmembrane protein 114, partial [Homo...
LOC100287541          0.005   PREDICTED: hypothetical protein XP_002344230 
SPEF2                 0.005   KPL2 protein isoform 1 
CLDN23                0.005   claudin 23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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