Guide to the Human Genome
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Name: LOC643783 Sequence: fasta or formatted (54aa) NCBI GI: 169166958
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {54aa} PREDICTED: hypothetical protein
alt mRNA {54aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8          8           6
 C cysteine            0.0          0           0
 D aspartate           0.0          0           0
 E glutamate           1.9          1           1
 F phenylalanine       0.0          0           0
 G glycine            16.7          9           2
 H histidine           1.9          1           1
 I isoleucine          5.6          3           1
 K lysine              0.0          0           0
 L leucine             3.7          2           1
 M methionine          1.9          1           1
 N asparagine          0.0          0           0
 P proline            16.7          9           2
 Q glutamine           1.9          1           1
 R arginine           25.9         14           3
 S serine              7.4          4           1
 T threonine           1.9          1           1
 V valine              0.0          0           0
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC643783             1.000   PREDICTED: hypothetical protein 
LOC643783             1.000   PREDICTED: hypothetical protein 
LOC338758             0.091   PREDICTED: hypothetical protein 
LOC338758             0.091   PREDICTED: hypothetical protein 
LOC338758             0.091   PREDICTED: hypothetical protein 
MARCH11               0.091   membrane-associated ring finger (C3HC4) 11 
LOC100292172          0.080   PREDICTED: hypothetical protein 
LOC100289763          0.080   PREDICTED: hypothetical protein XP_002347867 
LOC100289681          0.080   PREDICTED: hypothetical protein XP_002343623 
MAGI2                 0.068   membrane associated guanylate kinase, WW and PDZ dom...
LOC729570             0.068   PREDICTED: hypothetical protein 
LOC729570             0.068   PREDICTED: hypothetical protein 
LOC729570             0.068   PREDICTED: hypothetical protein 
ZNF318                0.068   zinc finger protein 318 
MATN3                 0.057   matrilin 3 precursor 
FLJ37078              0.057   hypothetical protein LOC222183 
LOC100293879          0.057   PREDICTED: hypothetical protein 
JUB                   0.057   ajuba isoform 1 
ZSWIM5                0.057   zinc finger, SWIM domain containing 5 
SYNCRIP               0.057   synaptotagmin binding, cytoplasmic RNA interacting ...
SYNCRIP               0.057   synaptotagmin binding, cytoplasmic RNA interacting ...
LOC100291828          0.057   PREDICTED: hypothetical protein XP_002344932 
LOC100128127          0.057   PREDICTED: hypothetical protein 
LOC100128127          0.057   PREDICTED: hypothetical protein 
LOC100288926          0.057   PREDICTED: hypothetical protein XP_002343509 
LOC100128127          0.057   PREDICTED: hypothetical protein 
SYNCRIP               0.045   synaptotagmin binding, cytoplasmic RNA interacting ...
AGAP2                 0.045   centaurin, gamma 1 isoform PIKE-L 
LOC100292793          0.045   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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