Guide to the Human Genome
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Name: CHST12 Sequence: fasta or formatted (414aa) NCBI GI: 8922112
Description:

carbohydrate sulfotransferase 12

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         32           2
 C cysteine            1.2          5           1
 D aspartate           6.3         26           2
 E glutamate           5.6         23           2
 F phenylalanine       6.5         27           1
 G glycine             3.9         16           1
 H histidine           3.4         14           1
 I isoleucine          2.9         12           2
 K lysine              5.3         22           2
 L leucine            11.6         48           2
 M methionine          1.4          6           1
 N asparagine          2.7         11           1
 P proline             7.0         29           2
 Q glutamine           3.4         14           2
 R arginine            9.4         39           2
 S serine              6.8         28           2
 T threonine           3.4         14           1
 V valine              5.3         22           1
 W tryptophan          2.2          9           1
 Y tyrosine            4.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbohydrate sulfotransferase 12 
CHST11                0.229   carbohydrate sulfotransferase 11 
CHST8                 0.187   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.187   carbohydrate (N-acetylgalactosamine 4-0) sulfotrans...
CHST8                 0.187   carbohydrate (N-acetylgalactosamine 4-0) sulfotransf...
CHST13                0.181   carbohydrate sulfotransferase 13 
CHST9                 0.167   GalNAc-4-sulfotransferase 2 
CHST14                0.156   dermatan 4 sulfotransferase 1 
CHST10                0.122   HNK-1 sulfotransferase 
PLEKHO2               0.014   pleckstrin homology domain containing, family O memb...
TTBK1                 0.011   tau tubulin kinase 1 
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC729570             0.010   PREDICTED: hypothetical protein 
ALPK3                 0.010   alpha-kinase 3 
BAZ1B                 0.010   bromodomain adjacent to zinc finger domain, 1B [Homo...
LOC100292419          0.008   PREDICTED: hypothetical protein 
LOC100288674          0.008   PREDICTED: hypothetical protein XP_002343540 
LOC100290297          0.008   PREDICTED: hypothetical protein XP_002347742 
RUFY3                 0.008   RUN and FYVE domain containing 3 isoform 3 
TET1                  0.007   CXXC finger 6 
FOXD4L2               0.007   forkhead box D4-like 2 
FOXD4L5               0.007   forkhead box D4-like 5 
FOXD4L4               0.007   forkhead box D4-like 4 
FOXD4                 0.007   forkhead box D4 
CACNA1G               0.006   voltage-dependent calcium channel alpha 1G subunit i...
LRRC68                0.006   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.006   PREDICTED: leucine rich repeat containing 68 
LRRC68                0.006   PREDICTED: leucine rich repeat containing 68 
FOXD4L3               0.006   forkhead box D4-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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