Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: NRTN Sequence: fasta or formatted (197aa) NCBI GI: 4758826
Description:

neurturin preproprotein

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         27           3
 C cysteine            4.6          9           2
 D aspartate           3.0          6           1
 E glutamate           6.6         13           1
 F phenylalanine       1.0          2           1
 G glycine             6.1         12           1
 H histidine           2.5          5           1
 I isoleucine          1.0          2           1
 K lysine              0.5          1           1
 L leucine            14.2         28           3
 M methionine          1.5          3           1
 N asparagine          0.0          0           0
 P proline             6.1         12           2
 Q glutamine           2.5          5           1
 R arginine           18.8         37           4
 S serine              5.1         10           2
 T threonine           2.5          5           1
 V valine              5.6         11           1
 W tryptophan          1.5          3           1
 Y tyrosine            3.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   neurturin preproprotein 
GDNF                  0.199   glial cell derived neurotrophic factor isoform 3 [Ho...
GDNF                  0.199   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.199   glial cell derived neurotrophic factor isoform 1 prep...
ARTN                  0.186   neurotrophic factor artemin isoform 2 
ARTN                  0.186   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.186   neurotrophic factor artemin isoform 3 precursor [Ho...
ARTN                  0.186   neurotrophic factor artemin isoform 1 precursor [Ho...
ARTN                  0.186   neurotrophic factor artemin isoform 3 precursor [Ho...
PSPN                  0.167   persephin precursor 
GDF15                 0.058   growth differentiation factor 15 
LOC100292463          0.058   PREDICTED: similar to growth differentiation factor...
AMH                   0.058   anti-Mullerian hormone 
LOC100292572          0.029   PREDICTED: hypothetical protein 
LOC100288181          0.029   PREDICTED: hypothetical protein 
LOC100288181          0.029   PREDICTED: hypothetical protein XP_002342920 
REM1                  0.019   RAS-like GTP-binding protein REM 
SPTBN4                0.016   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
PRM1                  0.013   protamine 1 
LOC100289242          0.013   PREDICTED: hypothetical protein XP_002342243 
BRF1                  0.013   transcription initiation factor IIIB isoform 3 [Homo...
BRF1                  0.013   transcription initiation factor IIIB isoform 1 [Homo...
JUND                  0.011   jun D proto-oncogene 
ARHGEF2               0.011   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.011   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.011   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
GPX4                  0.011   glutathione peroxidase 4 isoform C precursor 
GALNT12               0.011   N-acetylgalactosaminyltransferase 12 
C17orf51              0.011   hypothetical protein LOC339263 
LOC342346             0.008   hypothetical protein LOC342346 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press