Guide to the Human Genome
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Name: GDF2 Sequence: fasta or formatted (429aa) NCBI GI: 7705308
Description:

growth differentiation factor 2

Referenced in:

TGF-beta Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         24           2
 C cysteine            2.3         10           2
 D aspartate           6.3         27           2
 E glutamate           6.5         28           2
 F phenylalanine       3.5         15           2
 G glycine             7.2         31           3
 H histidine           3.5         15           1
 I isoleucine          4.0         17           2
 K lysine              6.5         28           2
 L leucine             9.1         39           2
 M methionine          1.6          7           1
 N asparagine          2.8         12           1
 P proline             5.4         23           2
 Q glutamine           2.8         12           1
 R arginine            4.4         19           2
 S serine             10.5         45           2
 T threonine           6.5         28           2
 V valine              7.5         32           2
 W tryptophan          1.6          7           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   growth differentiation factor 2 
BMP10                 0.323   bone morphogenetic protein 10 preproprotein 
BMP4                  0.140   bone morphogenetic protein 4 preproprotein 
BMP4                  0.140   bone morphogenetic protein 4 preproprotein 
BMP4                  0.140   bone morphogenetic protein 4 preproprotein 
BMP2                  0.140   bone morphogenetic protein 2 preproprotein 
GDF6                  0.127   growth differentiation factor 6 precursor 
BMP6                  0.122   bone morphogenetic protein 6 preproprotein 
BMP5                  0.117   bone morphogenetic protein 5 preproprotein 
BMP8B                 0.115   bone morphogenetic protein 8B preproprotein 
BMP8A                 0.114   bone morphogenetic protein 8A 
BMP7                  0.113   bone morphogenetic protein 7 precursor 
GDF5                  0.110   growth differentiation factor 5 preproprotein 
GDF7                  0.106   growth differentiation factor 7 preproprotein 
NODAL                 0.102   nodal precursor 
GDF3                  0.083   growth differentiation factor 3 precursor 
BMP3                  0.081   bone morphogenetic protein 3 preproprotein 
GDF10                 0.079   growth differentiation factor 10 precursor 
GDF1                  0.079   growth differentiation factor 1 
BMP15                 0.077   bone morphogenetic protein 15 precursor 
INHBA                 0.063   inhibin beta A precursor 
GDF9                  0.061   growth differentiation factor 9 precursor 
INHBE                 0.056   activin beta E 
MSTN                  0.055   myostatin 
GDF15                 0.052   growth differentiation factor 15 
LOC100292463          0.052   PREDICTED: similar to growth differentiation factor...
GDF11                 0.049   growth differentiation factor 11 precursor 
INHBB                 0.047   inhibin beta B subunit preproprotein 
INHBC                 0.042   inhibin beta C chain preproprotein 
TGFB2                 0.036   transforming growth factor, beta 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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