Guide to the Human Genome
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Name: BCL7C Sequence: fasta or formatted (217aa) NCBI GI: 20336477
Description:

B-cell CLL/lymphoma 7C

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         17           2
 C cysteine            0.5          1           1
 D aspartate           5.1         11           2
 E glutamate          12.0         26           3
 F phenylalanine       1.4          3           1
 G glycine            10.6         23           3
 H histidine           0.5          1           1
 I isoleucine          2.8          6           1
 K lysine              4.1          9           2
 L leucine             5.1         11           2
 M methionine          1.4          3           1
 N asparagine          1.8          4           1
 P proline            14.3         31           2
 Q glutamine           3.2          7           1
 R arginine           10.1         22           3
 S serine              6.0         13           1
 T threonine           5.1         11           1
 V valine              6.5         14           2
 W tryptophan          1.4          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   B-cell CLL/lymphoma 7C 
BCL7B                 0.347   B-cell CLL/lymphoma 7B 
BCL7A                 0.231   B-cell CLL/lymphoma 7A isoform b 
BCL7A                 0.226   B-cell CLL/lymphoma 7A isoform a 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.052   mitogen-activated protein kinase 7 isoform 2 
DGKK                  0.052   diacylglycerol kinase kappa 
CPSF6                 0.047   cleavage and polyadenylation specific factor 6, 68 ...
LOC100130837          0.045   PREDICTED: hypothetical protein 
LOC100130837          0.045   PREDICTED: hypothetical protein 
SYN1                  0.045   synapsin I isoform Ia 
SYN1                  0.045   synapsin I isoform Ib 
SLC16A2               0.042   solute carrier family 16, member 2 
TTC15                 0.042   tetratricopeptide repeat domain 15 
RPH3A                 0.042   rabphilin 3A homolog isoform 1 
RPH3A                 0.042   rabphilin 3A homolog isoform 2 
PALM3                 0.040   hypothetical protein LOC342979 
BAG3                  0.040   BCL2-associated athanogene 3 
RERE                  0.040   atrophin-1 like protein isoform b 
RERE                  0.040   atrophin-1 like protein isoform a 
RERE                  0.040   atrophin-1 like protein isoform a 
ANXA11                0.038   annexin A11 
ANXA11                0.038   annexin A11 
ANXA11                0.038   annexin A11 
SFPQ                  0.038   splicing factor proline/glutamine rich (polypyrimidin...
PRG4                  0.038   proteoglycan 4 isoform D 
PRG4                  0.038   proteoglycan 4 isoform C 
PRG4                  0.038   proteoglycan 4 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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