Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CACNG6 Sequence: fasta or formatted (189aa) NCBI GI: 22027560
Description:

voltage-dependent calcium channel gamma-6 subunit isoform c

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [260aa] voltage-dependent calcium channel gamma-6 subunit isoform a
alt prot [214aa] voltage-dependent calcium channel gamma-6 subunit isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.6         20           2
 C cysteine            3.2          6           1
 D aspartate           1.6          3           1
 E glutamate           5.8         11           2
 F phenylalanine       2.6          5           2
 G glycine            11.1         21           2
 H histidine           2.1          4           1
 I isoleucine          0.5          1           1
 K lysine              3.2          6           1
 L leucine            16.4         31           4
 M methionine          1.1          2           2
 N asparagine          2.1          4           1
 P proline             6.3         12           3
 Q glutamine           2.1          4           1
 R arginine            8.5         16           3
 S serine              5.8         11           1
 T threonine           4.8          9           1
 V valine              6.9         13           1
 W tryptophan          3.7          7           1
 Y tyrosine            1.6          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   voltage-dependent calcium channel gamma-6 subunit is... 
CACNG6                0.962   voltage-dependent calcium channel gamma-6 subunit is...
CACNG6                0.554   voltage-dependent calcium channel gamma-6 subunit is...
CACNG1                0.103   voltage-dependent calcium channel gamma-1 subunit [Ho...
NKG7                  0.019   natural killer cell group 7 sequence 
BAT2L                 0.019   HLA-B associated transcript 2-like 
CACNG4                0.016   voltage-dependent calcium channel gamma-4 subunit [Ho...
GDNF                  0.011   glial cell derived neurotrophic factor isoform 2 pre...
GDNF                  0.011   glial cell derived neurotrophic factor isoform 1 prep...
PERP                  0.011   PERP, TP53 apoptosis effector 
CACNG2                0.011   voltage-dependent calcium channel gamma-2 subunit [Ho...
LOC100293006          0.008   PREDICTED: hypothetical protein 
HMCN2                 0.008   PREDICTED: hemicentin 2 
LOC100291332          0.008   PREDICTED: hypothetical protein XP_002347440 
HMCN2                 0.008   PREDICTED: hemicentin 2 
LOC100289447          0.008   PREDICTED: hypothetical protein XP_002344275 
HMCN2                 0.008   PREDICTED: hemicentin 2 
TSPO                  0.008   translocator protein isoform PBR 
ADCY4                 0.008   adenylate cyclase 4 
CACNG7                0.008   voltage-dependent calcium channel gamma-7 subunit [H...
LOC100131405          0.008   PREDICTED: hypothetical protein 
LOC338667             0.008   PREDICTED: hypothetical protein LOC338667 
LOC338667             0.008   PREDICTED: hypothetical protein LOC338667 
LOC100132799          0.008   PREDICTED: hypothetical protein 
LOC338667             0.008   PREDICTED: hypothetical protein LOC338667 
BCL7C                 0.008   B-cell CLL/lymphoma 7C 
CLDN23                0.008   claudin 23 
FBXO24                0.008   F-box only protein 24 isoform 1 
SLC23A3               0.005   solute carrier family 23 (nucleobase transporters),...
SLC23A3               0.005   solute carrier family 23 (nucleobase transporters),...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press