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Search of human proteins with 40353736
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
(653 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40353736 c-Mpl binding protein isoform c [Homo sapiens] 1318 0.0
gi|40353738 c-Mpl binding protein isoform a [Homo sapiens] 778 0.0
gi|40353740 c-Mpl binding protein isoform b [Homo sapiens] 778 0.0
gi|57634536 La ribonucleoprotein domain family, member 4B [Homo ... 253 4e-67
gi|61102725 la related protein isoform 2 [Homo sapiens] 74 6e-13
gi|39725634 la related protein isoform 1 [Homo sapiens] 74 6e-13
gi|30061565 La ribonucleoprotein domain family member 2 isoform ... 69 2e-11
gi|30061569 La ribonucleoprotein domain family member 2 isoform ... 69 2e-11
gi|30061567 La ribonucleoprotein domain family member 2 isoform ... 69 2e-11
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ... 56 1e-07
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ... 56 1e-07
gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens] 54 6e-07
gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens] 54 6e-07
gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens] 54 6e-07
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 45 2e-04
gi|21536423 amphiphysin isoform 2 [Homo sapiens] 45 2e-04
gi|4502081 amphiphysin isoform 1 [Homo sapiens] 45 2e-04
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens] 45 2e-04
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens] 45 2e-04
gi|10835067 autoantigen La [Homo sapiens] 40 0.005
gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo ... 40 0.005
gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo ... 40 0.005
gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo ... 40 0.005
gi|149944526 additional sex combs like 3 [Homo sapiens] 37 0.075
gi|112382212 SEC24 (S. cerevisiae) homolog B isoform a [Homo sap... 36 0.13
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 35 0.17
gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo sap... 35 0.17
gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H... 35 0.28
gi|4557719 DNA ligase I [Homo sapiens] 35 0.28
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 34 0.37
>gi|40353736 c-Mpl binding protein isoform c [Homo sapiens]
Length = 653
Score = 1318 bits (3410), Expect = 0.0
Identities = 653/653 (100%), Positives = 653/653 (100%)
Query: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL 60
MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL
Sbjct: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL 60
Query: 61 SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK 120
SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK
Sbjct: 61 SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK 120
Query: 121 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS
Sbjct: 121 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
Query: 181 PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI 240
PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI
Sbjct: 181 PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI 240
Query: 241 TFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQ 300
TFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQ
Sbjct: 241 TFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQ 300
Query: 301 KNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPTVTGHQEQTYLQKETS 360
KNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPTVTGHQEQTYLQKETS
Sbjct: 301 KNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPTVTGHQEQTYLQKETS 360
Query: 361 TLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSS 420
TLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSS
Sbjct: 361 TLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSS 420
Query: 421 SRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAE 480
SRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAE
Sbjct: 421 SRMPGELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAE 480
Query: 481 LTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVAL 540
LTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVAL
Sbjct: 481 LTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVAL 540
Query: 541 QEPRKLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEAR 600
QEPRKLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEAR
Sbjct: 541 QEPRKLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEAR 600
Query: 601 ASKDYSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGKEQYVPPRSPK 653
ASKDYSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGKEQYVPPRSPK
Sbjct: 601 ASKDYSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGKEQYVPPRSPK 653
>gi|40353738 c-Mpl binding protein isoform a [Homo sapiens]
Length = 724
Score = 778 bits (2009), Expect = 0.0
Identities = 385/386 (99%), Positives = 386/386 (100%)
Query: 268 MAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG 327
+APFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG
Sbjct: 339 LAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG 398
Query: 328 QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD 387
QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD
Sbjct: 399 QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD 458
Query: 388 RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE 447
RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE
Sbjct: 459 RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE 518
Query: 448 ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT 507
ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT
Sbjct: 519 ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT 578
Query: 508 TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL 567
TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL
Sbjct: 579 TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL 638
Query: 568 RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ 627
RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ
Sbjct: 639 RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ 698
Query: 628 FSHRAIPQGVTRRNGKEQYVPPRSPK 653
FSHRAIPQGVTRRNGKEQYVPPRSPK
Sbjct: 699 FSHRAIPQGVTRRNGKEQYVPPRSPK 724
Score = 545 bits (1404), Expect = e-155
Identities = 271/287 (94%), Positives = 274/287 (95%), Gaps = 3/287 (1%)
Query: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL 60
MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL
Sbjct: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEGNAEL 60
Query: 61 SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK 120
SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK
Sbjct: 61 SEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVSTEDLK 120
Query: 121 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS
Sbjct: 121 ECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
Query: 181 PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI 240
PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI
Sbjct: 181 PMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYI 240
Query: 241 TFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYK 287
TFQSDTDAQQAFKYLREEVKTFQGKPIM +N F + Y+
Sbjct: 241 TFQSDTDAQQAFKYLREEVKTFQGKPIMVRI---KAINTFFAKNGYR 284
>gi|40353740 c-Mpl binding protein isoform b [Homo sapiens]
Length = 730
Score = 778 bits (2009), Expect = 0.0
Identities = 385/386 (99%), Positives = 386/386 (100%)
Query: 268 MAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG 327
+APFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG
Sbjct: 345 LAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDG 404
Query: 328 QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD 387
QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD
Sbjct: 405 QLNRYSSRNFPAERHNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDD 464
Query: 388 RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE 447
RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE
Sbjct: 465 RISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNE 524
Query: 448 ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT 507
ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT
Sbjct: 525 ELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQT 584
Query: 508 TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL 567
TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL
Sbjct: 585 TIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPL 644
Query: 568 RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ 627
RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ
Sbjct: 645 RELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKDYSGFRGNIIPRGAAGKIREQRRQ 704
Query: 628 FSHRAIPQGVTRRNGKEQYVPPRSPK 653
FSHRAIPQGVTRRNGKEQYVPPRSPK
Sbjct: 705 FSHRAIPQGVTRRNGKEQYVPPRSPK 730
Score = 540 bits (1391), Expect = e-153
Identities = 272/293 (92%), Positives = 275/293 (93%), Gaps = 9/293 (3%)
Query: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPE----- 55
MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPE
Sbjct: 1 MLLFVEQVASKGTGLNPNAKVWQEIAPGNTDATPVTHGTESSWHEIAATSGAHPEVSVFN 60
Query: 56 -GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAV 114
GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAV
Sbjct: 61 TGNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAV 120
Query: 115 STEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLIL 174
STEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLIL
Sbjct: 121 STEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLIL 180
Query: 175 EVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAH 234
EVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAH
Sbjct: 181 EVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAH 240
Query: 235 NSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYK 287
NSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMA +N F + Y+
Sbjct: 241 NSNWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARI---KAINTFFAKNGYR 290
>gi|57634536 La ribonucleoprotein domain family, member 4B [Homo
sapiens]
Length = 738
Score = 253 bits (646), Expect = 4e-67
Identities = 135/264 (51%), Positives = 183/264 (69%), Gaps = 10/264 (3%)
Query: 9 ASKGTGLNPNAKVWQEIAPG-NTDATPVTHGTESSWHEIAATSGAHPEGNAELSEDICKE 67
A+K + LNPNA+VW AP + +A+ G ++W E+A ++ + D +
Sbjct: 50 ATKVSELNPNAEVWG--APVLHLEASSAADGVSAAWEEVAGHHADRGPQGSDANGDGDQG 107
Query: 68 YEVMYSSSCETTRNTTGIEESTDGMILGPEDLSY--QIYDVSGESNSAVSTEDLKECLKK 125
+E +++ + + + + + LGP + + + G + S ED +E LKK
Sbjct: 108 HE---NAALPDPQESDPAD--MNALALGPSEYDSLPENSETGGNESQPDSQEDPREVLKK 162
Query: 126 QLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQV 185
LEFC SRENL+ D+YLISQMDSDQ++PI TVAN++ IKKL+TD DLI+EVLRS P+VQV
Sbjct: 163 TLEFCLSRENLASDMYLISQMDSDQYVPITTVANLDHIKKLSTDVDLIVEVLRSLPLVQV 222
Query: 186 DEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSD 245
DEKGEKVRP+ RCIVILREI E+TP+EEV+ LFK +N PK I+CEFA+N NW+ITF+++
Sbjct: 223 DEKGEKVRPNQNRCIVILREISESTPVEEVEALFKGDNLPKFINCEFAYNDNWFITFETE 282
Query: 246 TDAQQAFKYLREEVKTFQGKPIMA 269
DAQQA+KYLREEVKTFQGKPI A
Sbjct: 283 ADAQQAYKYLREEVKTFQGKPIKA 306
Score = 128 bits (322), Expect = 1e-29
Identities = 117/409 (28%), Positives = 174/409 (42%), Gaps = 65/409 (15%)
Query: 266 PIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLG 325
P++ PFPN F+NGF SP ++K A+ + R + P S H+ S G
Sbjct: 374 PLVTPFPNTGFINGFTSP-AFKPAASPLTSLRQYPPRSRNP---SKSHLRHAIP-SAERG 428
Query: 326 DGQLNRYSSRNFPAER--------------------HNPTVTGHQEQTYLQKETSTLQVE 365
G L S NF A+R NP+ +E + E +L E
Sbjct: 429 PGLLESPSIFNFTADRLINGVRSPQTRQAGQTRTRIQNPSAYAKREAGPGRVEPGSL--E 486
Query: 366 QNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPG 425
+ GRGR+ F R++RE+ S S K P+P F+L S+FPPLPG++ +
Sbjct: 487 SSPGLGRGRKNSFGYRKKREEKFTSSQTQSPTPPKPPSPSFELGLSSFPPLPGAAGNLKT 546
Query: 426 ELVLENRMSDVVKGVYKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALS 485
E + ENR+S ++ G KE+ T+S + S + S + CA T
Sbjct: 547 EDLFENRLSSLIIGPSKER-----TLSADASVNTLPVVVSREP---SVPASCAVSAT-YE 597
Query: 486 TTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRASTASPCNN-NINAATAVALQEPR 544
+ L +D V + ++ P A TA+ C + +N A E R
Sbjct: 598 RSPSPAHLPDDPKVAEKQRETHSVDRLP-------SALTATACKSVQVNGAAT----ELR 646
Query: 545 KLSYAEVCQKPPKEPSSVLVQPLRELRSNVVSPTKNEDNGAPENSVEKPHEKPEARASKD 604
K SYAE+CQ+ KEP S +QP +E + N V K E A E+ E P +++
Sbjct: 647 KPSYAEICQRTSKEPPSSPLQPQKEQKPNTVGCGKEEKKLA--EPAERYREPPALKST-- 702
Query: 605 YSGFRGNIIPRGAAGKIREQRRQFSHRAIPQGVTRRNGKEQYVPPRSPK 653
G R+QRR R P + +R +EQ PP+SP+
Sbjct: 703 -------------PGAPRDQRRPAGGRPSPSAMGKRLSREQSTPPKSPQ 738
>gi|61102725 la related protein isoform 2 [Homo sapiens]
Length = 1096
Score = 73.6 bits (179), Expect = 6e-13
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 382 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 441
Query: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 442 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 490
Query: 218 LFKSE-----NCPKVI 228
+++ NCP+ +
Sbjct: 491 YSQTDFSQLLNCPEFV 506
>gi|39725634 la related protein isoform 1 [Homo sapiens]
Length = 1019
Score = 73.6 bits (179), Expect = 6e-13
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 16/136 (11%)
Query: 98 DLSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTV 157
+++Y +VS +V E LK+ +K+Q+E+ FS +NL +D +L +MD+D F+PI +
Sbjct: 305 NITYYFDNVSSTELYSVDQELLKDYIKRQIEYYFSVDNLERDFFLRRKMDADGFLPITLI 364
Query: 158 ANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKG 217
A+ ++ LTTD LI L+ S +V++ + EKVR RE PE P+ +
Sbjct: 365 ASFHRVQALTTDISLIFAALKDSKVVEIVD--EKVR---------RREEPEKWPLPPIVD 413
Query: 218 LFKSE-----NCPKVI 228
+++ NCP+ +
Sbjct: 414 YSQTDFSQLLNCPEFV 429
>gi|30061565 La ribonucleoprotein domain family member 2 isoform 2
[Homo sapiens]
Length = 522
Score = 68.6 bits (166), Expect = 2e-11
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 56 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 115
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
Query: 116 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 175
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
Query: 176 VLRSSPMVQ-VDEKGEK 191
L+ S V+ VDEK K
Sbjct: 272 ALKDSTEVEIVDEKMRK 288
>gi|30061569 La ribonucleoprotein domain family member 2 isoform 3
[Homo sapiens]
Length = 358
Score = 68.6 bits (166), Expect = 2e-11
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 56 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 115
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
Query: 116 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 175
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
Query: 176 VLRSSPMVQ-VDEKGEK 191
L+ S V+ VDEK K
Sbjct: 272 ALKDSTEVEIVDEKMRK 288
>gi|30061567 La ribonucleoprotein domain family member 2 isoform 1
[Homo sapiens]
Length = 914
Score = 68.6 bits (166), Expect = 2e-11
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 56 GNAELSEDICKEYEVMYSSSCETTRNTTGIEESTDGMILGPEDLSYQIYDVSGESNSAVS 115
GN L+ D Y Y E T E +T M + Q+Y V
Sbjct: 164 GNPRLNFD----YSYGYQEHGERTDQPFQTELNTSMMYYYDDGTGVQVYPVEEAL----- 214
Query: 116 TEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVANMEEIKKLTTDPDLILE 175
LKE +K+Q+E+ FS ENL +D +L +MD F+PI +A + ++ LTT+ +LILE
Sbjct: 215 ---LKEYIKRQIEYYFSVENLERDFFLRGKMDEQGFLPISLIAGFQRVQALTTNLNLILE 271
Query: 176 VLRSSPMVQ-VDEKGEK 191
L+ S V+ VDEK K
Sbjct: 272 ALKDSTEVEIVDEKMRK 288
>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 55.8 bits (133), Expect = 1e-07
Identities = 75/346 (21%), Positives = 131/346 (37%), Gaps = 55/346 (15%)
Query: 123 LKKQLEFCFSRENLSKDLYLISQMDS--DQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
+ KQ++F F NL KD +L Q++ D ++ I + + ++KKLTTD LI LRSS
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 181 PMVQVDEKGEKVR---------PSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCE 231
+V++D +G ++R V + +P+ ++ +F C V+
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF--GKCGNVVYIS 155
Query: 232 FAHNSNW-------YITFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPG 284
H + ++ F++ A +A ++L P AP G F +
Sbjct: 156 IPHYKSTGDPKGFAFVEFETKEQAAKAIEFL-------NNPPEEAPRKPGIFPKTVKNKP 208
Query: 285 SYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNP 344
+ +K R+K + E+ + S+ +R P
Sbjct: 209 IPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSIS------------KMKRSRP 256
Query: 345 TVTGHQ-EQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPT 403
T G E T QK+ S + +++ + G+R+R AES AP
Sbjct: 257 TSEGSDIESTEPQKQCSKKKKKRDRVEASSLPEVRTGKRKRSSS-------EDAESLAPR 309
Query: 404 PKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEEL 449
K + + + E ENR D+ +EKD +L
Sbjct: 310 SKVKKI------IQKDIIKEASEASKENR--DIEISTEEEKDTGDL 347
>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
sapiens]
Length = 582
Score = 55.8 bits (133), Expect = 1e-07
Identities = 75/346 (21%), Positives = 131/346 (37%), Gaps = 55/346 (15%)
Query: 123 LKKQLEFCFSRENLSKDLYLISQMDS--DQFIPIWTVANMEEIKKLTTDPDLILEVLRSS 180
+ KQ++F F NL KD +L Q++ D ++ I + + ++KKLTTD LI LRSS
Sbjct: 38 IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMKKLTTDGKLIARALRSS 97
Query: 181 PMVQVDEKGEKVR---------PSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCE 231
+V++D +G ++R V + +P+ ++ +F C V+
Sbjct: 98 AVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSWIERVF--GKCGNVVYIS 155
Query: 232 FAHNSNW-------YITFQSDTDAQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPG 284
H + ++ F++ A +A ++L P AP G F +
Sbjct: 156 IPHYKSTGDPKGFAFVEFETKEQAAKAIEFL-------NNPPEEAPRKPGIFPKTVKNKP 208
Query: 285 SYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNP 344
+ +K R+K + E+ + S+ +R P
Sbjct: 209 IPALRVVEEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSIS------------KMKRSRP 256
Query: 345 TVTGHQ-EQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPT 403
T G E T QK+ S + +++ + G+R+R AES AP
Sbjct: 257 TSEGSDIESTEPQKQCSKKKKKRDRVEASSLPEVRTGKRKRSSS-------EDAESLAPR 309
Query: 404 PKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEEL 449
K + + + E ENR D+ +EKD +L
Sbjct: 310 SKVKKI------IQKDIIKEASEASKENR--DIEISTEEEKDTGDL 347
>gi|239753842 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 99 LSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVA 158
+ Y D +G V LKEC+K+Q+E F+ EN +D +L + +PI+ +A
Sbjct: 201 MMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLPIFLIA 260
Query: 159 NMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKR 198
+ ++ LTT +LI E L+ S V++ EK+R +++
Sbjct: 261 GFQRVQALTT--NLITEALKDSTEVEI--MNEKMRKKNQK 296
>gi|169166778 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 99 LSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVA 158
+ Y D +G V LKEC+K+Q+E F+ EN +D +L + +PI+ +A
Sbjct: 201 MMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLPIFLIA 260
Query: 159 NMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKR 198
+ ++ LTT +LI E L+ S V++ EK+R +++
Sbjct: 261 GFQRVQALTT--NLITEALKDSTEVEI--MNEKMRKKNQK 296
>gi|169166363 PREDICTED: similar to hCG2040199 [Homo sapiens]
Length = 315
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 99 LSYQIYDVSGESNSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFIPIWTVA 158
+ Y D +G V LKEC+K+Q+E F+ EN +D +L + +PI+ +A
Sbjct: 201 MMYYYDDGTGVQVYRVEEALLKECIKRQIEHYFNAENSERDYFLRGKRGEQDSLPIFLIA 260
Query: 159 NMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKR 198
+ ++ LTT +LI E L+ S V++ EK+R +++
Sbjct: 261 GFQRVQALTT--NLITEALKDSTEVEI--MNEKMRKKNQK 296
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 45.4 bits (106), Expect = 2e-04
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 117 EDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ--FIPIWTVANMEEIKKLTTDPDLIL 174
E+L + L Q+EF FS ENL KD +L+ + ++ ++ + + + +++K LT D
Sbjct: 90 EELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTA 149
Query: 175 EVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCP 225
L+ S +++++E KVR TTP+ LF +EN P
Sbjct: 150 HALKYSVVLELNEDHRKVR--------------RTTPVP----LFPNENLP 182
>gi|21536423 amphiphysin isoform 2 [Homo sapiens]
Length = 653
Score = 45.4 bits (106), Expect = 2e-04
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 512 SPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPLRELR 571
SPP P + TASP N+ A + A PR S +K P P V P +EL+
Sbjct: 262 SPPEEPSPLPSPTASP--NHTLAPASPAPARPRSPSQT---RKGPPVPPLPKVTPTKELQ 316
Query: 572 S-NVVSPTKNEDNGAPENSVEKP--HEKPEARASK-----DYSGFRGNIIPRGAAG 619
N++S EDN PE SV P +E PE + + D+ F+ + P G+AG
Sbjct: 317 QENIISFF--EDNFVPEISVTTPSQNEVPEVKKEETLLDLDFDPFKPEVTPAGSAG 370
>gi|4502081 amphiphysin isoform 1 [Homo sapiens]
Length = 695
Score = 45.4 bits (106), Expect = 2e-04
Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 512 SPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPLRELR 571
SPP P + TASP N+ A + A PR S +K P P V P +EL+
Sbjct: 262 SPPEEPSPLPSPTASP--NHTLAPASPAPARPRSPSQT---RKGPPVPPLPKVTPTKELQ 316
Query: 572 S-NVVSPTKNEDNGAPENSVEKP--HEKPEARASK-----DYSGFRGNIIPRGAAG 619
N++S EDN PE SV P +E PE + + D+ F+ + P G+AG
Sbjct: 317 QENIISFF--EDNFVPEISVTTPSQNEVPEVKKEETLLDLDFDPFKPEVTPAGSAG 370
>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
Length = 2087
Score = 45.1 bits (105), Expect = 2e-04
Identities = 63/281 (22%), Positives = 107/281 (38%), Gaps = 41/281 (14%)
Query: 299 FQKNRVKPQFR----SSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPT-VTGHQ-EQ 352
FQ +R QF + G +H + + GD +S+ E+H+ +TG+Q Q
Sbjct: 1098 FQTDRPAEQFHLQNNAPGNCDHPLPETTATGDPT---HSNTTESGEQHHQVDLTGNQPHQ 1154
Query: 353 TYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASN 412
YL +GD + R T + DD +S P + ++ PT F L
Sbjct: 1155 AYL-----------SGDPEKARITSVPLDSEKSDDHVSFPEDQSGKNSMPTVSF-LDQDQ 1202
Query: 413 FPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELTISCP-----VPADEQTECTSAQ 467
PP S + P L D + + D + P P+ E TS
Sbjct: 1203 SPPRFYSGDQPPSYL---GASVDKLHHPLEFADKSPTPPNLPSDKIYPPSGSPEENTSTA 1259
Query: 468 QLNMSTSSPCAAELTALSTTQQEKDLIED------SSVQKDGLNQTTIPVSPPSTTKPSR 521
+ T++P A+ +ST + D+ E ++ ++T P+ PP + R
Sbjct: 1260 TMTYMTTTPATAQ---MSTKEASWDVAEQPTTADFAAATLQRTHRTNRPLPPPPS---QR 1313
Query: 522 ASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSV 562
++ P + AAT + L K+ + P EP ++
Sbjct: 1314 SAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPEPRAM 1354
>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
Length = 1738
Score = 45.1 bits (105), Expect = 2e-04
Identities = 63/281 (22%), Positives = 107/281 (38%), Gaps = 41/281 (14%)
Query: 299 FQKNRVKPQFR----SSGGSEHSTEGSVSLGDGQLNRYSSRNFPAERHNPT-VTGHQ-EQ 352
FQ +R QF + G +H + + GD +S+ E+H+ +TG+Q Q
Sbjct: 749 FQTDRPAEQFHLQNNAPGNCDHPLPETTATGDPT---HSNTTESGEQHHQVDLTGNQPHQ 805
Query: 353 TYLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPSTAESKAPTPKFDLLASN 412
YL +GD + R T + DD +S P + ++ PT F L
Sbjct: 806 AYL-----------SGDPEKARITSVPLDSEKSDDHVSFPEDQSGKNSMPTVSF-LDQDQ 853
Query: 413 FPPLPGSSSRMPGELVLENRMSDVVKGVYKEKDNEELTISCP-----VPADEQTECTSAQ 467
PP S + P L D + + D + P P+ E TS
Sbjct: 854 SPPRFYSGDQPPSYL---GASVDKLHHPLEFADKSPTPPNLPSDKIYPPSGSPEENTSTA 910
Query: 468 QLNMSTSSPCAAELTALSTTQQEKDLIED------SSVQKDGLNQTTIPVSPPSTTKPSR 521
+ T++P A+ +ST + D+ E ++ ++T P+ PP + R
Sbjct: 911 TMTYMTTTPATAQ---MSTKEASWDVAEQPTTADFAAATLQRTHRTNRPLPPPPS---QR 964
Query: 522 ASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSV 562
++ P + AAT + L K+ + P EP ++
Sbjct: 965 SAEQPPVVGQVQAATNIGLNNSHKVQGVVPVPERPPEPRAM 1005
>gi|10835067 autoantigen La [Homo sapiens]
Length = 408
Score = 40.4 bits (93), Expect = 0.005
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 111 NSAVSTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQ-FIPIWTVANMEEIKKLTTD 169
N ++ + K C Q+E+ F NL +D +L Q+ D+ ++P+ + + +LTTD
Sbjct: 7 NEKMAALEAKIC--HQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTD 64
Query: 170 PDLILEVLRSS--PMVQVDEKGEKVRPSHKRCIVILREIPETT 210
++I+E L S ++++ E K+R S + +PE T
Sbjct: 65 FNVIVEALSKSKAELMEISEDKTKIRRSPS------KPLPEVT 101
>gi|34335264 zinc finger, MYND-type containing 8 isoform c [Homo
sapiens]
Length = 1135
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 398 ESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMS---DVVKGVYKEKDNEELTISCP 454
E K P+PK D++ PP S P E + R S + +T++ P
Sbjct: 727 EPKEPSPKQDVVGKT-PPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAP 785
Query: 455 VPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPP 514
PA + + L ++P + S+T Q+K++ + S L T+ SP
Sbjct: 786 APAATGSPVKKQRPLLPKETAPAVQRVVWNSSTVQQKEITQSPSTSTITL-VTSTQSSPL 844
Query: 515 STTKPSRASTASPCNNNINAATAVA 539
T+ S ++ S N ++ ATA A
Sbjct: 845 VTSSGSMSTLVSSVNADLPIATASA 869
>gi|34335262 zinc finger, MYND-type containing 8 isoform a [Homo
sapiens]
Length = 1188
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 398 ESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMS---DVVKGVYKEKDNEELTISCP 454
E K P+PK D++ PP S P E + R S + +T++ P
Sbjct: 752 EPKEPSPKQDVVGKT-PPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAP 810
Query: 455 VPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPP 514
PA + + L ++P + S+T Q+K++ + S L T+ SP
Sbjct: 811 APAATGSPVKKQRPLLPKETAPAVQRVVWNSSTVQQKEITQSPSTSTITL-VTSTQSSPL 869
Query: 515 STTKPSRASTASPCNNNINAATAVA 539
T+ S ++ S N ++ ATA A
Sbjct: 870 VTSSGSMSTLVSSVNADLPIATASA 894
>gi|34335266 zinc finger, MYND-type containing 8 isoform b [Homo
sapiens]
Length = 1160
Score = 40.4 bits (93), Expect = 0.005
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 398 ESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMS---DVVKGVYKEKDNEELTISCP 454
E K P+PK D++ PP S P E + R S + +T++ P
Sbjct: 752 EPKEPSPKQDVVGKT-PPSTTVGSHSPPETPVLTRSSAQTSAAGATATTSTSSTVTVTAP 810
Query: 455 VPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPP 514
PA + + L ++P + S+T Q+K++ + S L T+ SP
Sbjct: 811 APAATGSPVKKQRPLLPKETAPAVQRVVWNSSTVQQKEITQSPSTSTITL-VTSTQSSPL 869
Query: 515 STTKPSRASTASPCNNNINAATAVA 539
T+ S ++ S N ++ ATA A
Sbjct: 870 VTSSGSMSTLVSSVNADLPIATASA 894
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 36.6 bits (83), Expect = 0.075
Identities = 45/149 (30%), Positives = 63/149 (42%), Gaps = 12/149 (8%)
Query: 459 EQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDL---IEDSSVQKDGLNQTTIPVSPPS 515
E +E + L +++ + + L S T DL E SSV L T VS S
Sbjct: 688 EISEASLMSNLPLTSEASPVSNLPLTSETSPMSDLPLTSETSSVSSMLLTSETTFVS--S 745
Query: 516 TTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPLRELRSNVV 575
PS S S N++IN +A Q+ + S +E P K+ SS +PL E N+
Sbjct: 746 LPLPSETSPIS--NSSINER--MAHQQRKSPSVSEEPLSPQKDESSATAKPLGE---NLT 798
Query: 576 SPTKNEDNGAPENSVEKPHEKPEARASKD 604
S KN N + PEA S+D
Sbjct: 799 SQQKNLSNTPEPIIMSSSSIAPEAFPSED 827
>gi|112382212 SEC24 (S. cerevisiae) homolog B isoform a [Homo
sapiens]
Length = 1268
Score = 35.8 bits (81), Expect = 0.13
Identities = 66/324 (20%), Positives = 111/324 (34%), Gaps = 66/324 (20%)
Query: 272 PNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNR 331
P SFVN +NSP Y +++ + G P S+ + S+ GD
Sbjct: 151 PYSSFVNHYNSPAMYSASSSVASQGFPSTCGHYAMSTVSNAAYPSVSYPSLPAGDTYGQM 210
Query: 332 YSSRNFPAER---------------------HNPTVTGHQEQT----------------- 353
++S+N P R P+ HQ+Q+
Sbjct: 211 FTSQNAPTVRPVKDNSFSGQNTAISHPSPLPPLPSQQHHQQQSLSGYSTLTWSSPGLPST 270
Query: 354 ---YLQKETSTLQVEQNGDYGRGRRTLFRGRRRREDDRISRPHPST------AESKAPTP 404
++ T +L V N +L + S P ST S TP
Sbjct: 271 QDNLIRNHTGSLAVANNNPTITVADSLSCPVMQNVQPPKSSPVVSTVLSGSSGSSSTRTP 330
Query: 405 KFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGV-YKEKDNEELTISCPVPADEQTEC 463
+N P P +S P EL+ + KGV Y E N + + S P P ++
Sbjct: 331 P----TANHPVEPVTSVTQPSELLQQ-------KGVQYGEYVNNQAS-SAPTPLSSTSDD 378
Query: 464 TSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPVSPPSTTKPSRAS 523
++ + ++ ++ S D +E S D L+ + +P +P AS
Sbjct: 379 EEEEEEDEEAGVDSSSTTSSASPMPNSYDALEGGS-YPDMLSSSASSPAPDPAPEPDPAS 437
Query: 524 TASPCNNNINAATAVALQEPRKLS 547
+P +A A + +P K++
Sbjct: 438 APAPA-----SAPAPVVPQPSKMA 456
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 35.4 bits (80), Expect = 0.17
Identities = 47/202 (23%), Positives = 72/202 (35%), Gaps = 11/202 (5%)
Query: 394 PSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMS--DVVKGVYKEKDNEELTI 451
PS A SK PKF +L ++ LP S + E++ E S + ++ +E+ T
Sbjct: 328 PSAASSKTKLPKFTILQTSEVSLPSDPSCVE-EILREMTHSWPTPLTSMHTAGHSEQSTF 386
Query: 452 SCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKDGLNQTTIPV 511
S +P E T L A ++S +D ++ SS + D T+
Sbjct: 387 S--IPGQESQHLTPGFTLQKWNDPTTRASTKSVSFKSMLEDDLKLSSDEDDLEPVKTLTT 444
Query: 512 SPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPSSVLVQPLRELR 571
+T A P NN +N A P + E SS
Sbjct: 445 QCTATELYQAVEKAKPRNNPVNPPLATPQPPPAVQASGGSGSSSESESSS------ESDS 498
Query: 572 SNVVSPTKNEDNGAPENSVEKP 593
S T +E N AP + +P
Sbjct: 499 DTESSTTDSESNEAPRVATPEP 520
>gi|112382214 SEC24 (S. cerevisiae) homolog B isoform b [Homo
sapiens]
Length = 1233
Score = 35.4 bits (80), Expect = 0.17
Identities = 57/285 (20%), Positives = 95/285 (33%), Gaps = 23/285 (8%)
Query: 272 PNGSFVNGFNSPGSYKTNAAAMNMGRPFQKNRVKPQFRSSGGSEHSTEGSVSLGDGQLNR 331
P SFVN +NSP Y +++ + G P S+ + S+ GD
Sbjct: 151 PYSSFVNHYNSPAMYSASSSVASQGFPSTCGHYAMSTVSNAAYPSVSYPSLPAGDTYGQM 210
Query: 332 YSSRNFPAER------HNPTVTGHQEQTYLQKETSTLQVEQNGDYGRGRRTLFRGRRRRE 385
++S+N P R + T + L S +Q G T
Sbjct: 211 FTSQNAPTVRPVKDNSFSGQNTAISHPSPLPPLPSQQHHQQQSLSGYSTLTWSSPGLPST 270
Query: 386 DDRISRPHPSTAESKAPTPKFDLLASNFPPLPGSSSRMPGELVLENRMSDVVKGVYKEKD 445
D + R H + P + S P+ + V + S VV V
Sbjct: 271 QDNLIRNHTGSLAVANNNPTITVADSLSCPVM--------QNVQPPKSSPVVSTVLSGSS 322
Query: 446 NEELTISCPV---PADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQKD 502
T + P P + T T +L ++ ++ S D +E S D
Sbjct: 323 GSSSTRTPPTANHPVEPVTSVTQPSELLQQKGVDSSSTTSSASPMPNSYDALEGGS-YPD 381
Query: 503 GLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLS 547
L+ + +P +P AS +P +A A + +P K++
Sbjct: 382 MLSSSASSPAPDPAPEPDPASAPAPA-----SAPAPVVPQPSKMA 421
>gi|6005743 DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [Homo
sapiens]
Length = 479
Score = 34.7 bits (78), Expect = 0.28
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)
Query: 188 KGEKVRPSHKRCIVILREIPETTPIEEVKGLFKSENCPKVISCEFAHNSNWYITFQSDTD 247
K EK++P +V E T EE + K+I N+N Q D +
Sbjct: 26 KEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIRSNLVDNTNQVEVLQRDPN 85
Query: 248 AQQAFKYLREEVKTFQGKPIMAPFPNGSFVNGFNSPGSYKTNAAAMNMGRPFQ 300
+ VK+F+ + G + GFN P + NA + + P Q
Sbjct: 86 SPLY------SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQ 132
>gi|4557719 DNA ligase I [Homo sapiens]
Length = 919
Score = 34.7 bits (78), Expect = 0.28
Identities = 48/215 (22%), Positives = 78/215 (36%), Gaps = 52/215 (24%)
Query: 388 RISRPHPSTAE----SKAPTPKFDLLASNFPPLPGSSSRMPGEL---VLENRMSDVVKGV 440
++S P P+T+ S + T D S P + ++P VLE + D +
Sbjct: 89 QVSPPRPATSPENNASLSDTSPMDSSPSGIPKRRTARKQLPKRTIQEVLEEQSEDEDREA 148
Query: 441 YKEKDNEELTISCPVPADEQTECTSAQQLNMSTSSPCAAELTALSTTQQEKDLIEDSSVQ 500
++K+ EE E+T S + ++T +
Sbjct: 149 KRKKEEEE----------EETPKESLTEAEVAT--------------------------E 172
Query: 501 KDGLNQTTIPVSPPSTTKPSRASTASPCNNNINAATAVALQEPRKLSYAEVCQKPPKEPS 560
K+G + P +PP K S+A T + + AT LQE + + KPP+
Sbjct: 173 KEGEDGDQ-PTTPPKPLKTSKAETPTESVSEPEVATKQELQEEEEQT------KPPRRAP 225
Query: 561 SVLVQPLRELRSNVVSPTKNEDNGAP--ENSVEKP 593
L + V K E+ GAP E + E P
Sbjct: 226 KTLSSFFTPRKPAVKKEVKEEEPGAPGKEGAAEGP 260
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 34.3 bits (77), Expect = 0.37
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 371 GRGRRTLFRGRRRREDDRISRPHPSTAESKAPT--PKFDLLASNFPPLP 417
GRGR+ +GR++ ++ S P P +AE++ T PK + A N PP P
Sbjct: 256 GRGRKG--KGRKKNKEIWTSSPPPDSAENQTSTDIPKTETPAPNLPPTP 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.127 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,695,907
Number of Sequences: 37866
Number of extensions: 1386835
Number of successful extensions: 4246
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 4019
Number of HSP's gapped (non-prelim): 320
length of query: 653
length of database: 18,247,518
effective HSP length: 109
effective length of query: 544
effective length of database: 14,120,124
effective search space: 7681347456
effective search space used: 7681347456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.