LIG1 29966

Name: LIG1	Sequence: fasta or formatted (919aa)		NCBI GI: 4557719
Description: DNA ligase I		Referenced in: DNases, Recombination, and DNA Repair Replication Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.3 76 2 C cysteine 1.2 11 1 D aspartate 5.2 48 1 E glutamate 10.9 100 6 F phenylalanine 2.7 25 2 G glycine 6.2 57 2 H histidine 1.3 12 2 I isoleucine 3.8 35 2 K lysine 7.7 71 2 L leucine 9.6 88 2 M methionine 1.0 9 1 N asparagine 1.7 16 2 P proline 7.8 72 4 Q glutamine 4.6 42 2 R arginine 6.3 58 3 S serine 7.8 72 2 T threonine 4.9 45 2 V valine 6.2 57 2 W tryptophan 0.8 7 1 Y tyrosine 2.0 18 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 DNA ligase I LIG3 0.084 ligase III, DNA, ATP-dependent isoform beta precurso... LIG3 0.084 ligase III, DNA, ATP-dependent isoform alpha precurs... LIG4 0.055 DNA ligase IV LIG4 0.055 DNA ligase IV LIG4 0.055 DNA ligase IV NEFH 0.028 neurofilament, heavy polypeptide 200kDa NEFM 0.023 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.023 neurofilament, medium polypeptide 150kDa isoform 2 ... NOLC1 0.022 nucleolar and coiled-body phosphoprotein 1 EIF5B 0.020 eukaryotic translation initiation factor 5B HDGF2 0.020 hepatoma-derived growth factor-related protein 2 iso... HDGF2 0.020 hepatoma-derived growth factor-related protein 2 iso... TULP1 0.018 tubby like protein 1 MAP1B 0.018 microtubule-associated protein 1B C14orf174 0.018 hypothetical protein LOC161394 ZC3H18 0.017 zinc finger CCCH-type containing 18 TCOF1 0.016 Treacher Collins-Franceschetti syndrome 1 isoform e... TCOF1 0.016 Treacher Collins-Franceschetti syndrome 1 isoform d... TCOF1 0.016 Treacher Collins-Franceschetti syndrome 1 isoform a ... TCOF1 0.016 Treacher Collins-Franceschetti syndrome 1 isoform c ... TXNDC2 0.015 thioredoxin domain-containing 2 isoform 1 TXNDC2 0.015 thioredoxin domain-containing 2 isoform 2 TXNDC2 0.015 thioredoxin domain-containing 2 isoform 1 FSCB 0.015 fibrous sheath CABYR binding protein TTN 0.015 titin isoform N2-A AKAP12 0.015 A kinase (PRKA) anchor protein 12 isoform 1 AKAP12 0.015 A kinase (PRKA) anchor protein 12 isoform 2 ANK2 0.015 ankyrin 2 isoform 1 SRRM2 0.015 splicing coactivator subunit SRm300 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.