SSB 210

Name: SSB	Sequence: fasta or formatted (408aa)		NCBI GI: 10835067
Description: autoantigen La		Referenced in: DEAD / H Helicase Family RNA-binding Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.6 27 2 C cysteine 0.7 3 1 D aspartate 7.4 30 2 E glutamate 12.0 49 2 F phenylalanine 4.7 19 1 G glycine 6.6 27 1 H histidine 1.5 6 1 I isoleucine 5.4 22 2 K lysine 15.0 61 2 L leucine 7.8 32 2 M methionine 1.5 6 1 N asparagine 4.9 20 2 P proline 2.5 10 1 Q glutamine 4.7 19 2 R arginine 4.2 17 2 S serine 4.2 17 1 T threonine 3.7 15 2 V valine 4.2 17 2 W tryptophan 1.2 5 1 Y tyrosine 1.5 6 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 autoantigen La LARP7 0.074 La ribonucleoprotein domain family, member 7 LARP7 0.074 La ribonucleoprotein domain family, member 7 LARP1 0.053 la related protein isoform 2 LARP1 0.053 la related protein isoform 1 LARP1B 0.043 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.043 La ribonucleoprotein domain family member 2 isoform ... LARP1B 0.043 La ribonucleoprotein domain family member 2 isoform ... LARP6 0.040 La ribonucleoprotein domain family, member 6 isoform... CALD1 0.029 caldesmon 1 isoform 1 PABPC4L 0.026 poly(A) binding protein, cytoplasmic 4-like MYO18A 0.025 myosin 18A isoform a RDX 0.024 radixin TULP1 0.023 tubby like protein 1 THRAP3 0.021 thyroid hormone receptor associated protein 3 [Homo... C11orf58 0.021 small acidic protein isoform a HTATSF1 0.020 HIV-1 Tat specific factor 1 HTATSF1 0.020 HIV-1 Tat specific factor 1 LOC283685 0.020 PREDICTED: golgi autoantigen, golgin subfamily a-li... PABPC4 0.020 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... PABPC4 0.020 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... PABPC4 0.020 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... LARP4 0.019 c-Mpl binding protein isoform a LARP4 0.019 c-Mpl binding protein isoform c LARP4 0.019 c-Mpl binding protein isoform b DNAJC2 0.019 DnaJ (Hsp40) homolog, subfamily C, member 2 isoform ... PTMS 0.019 parathymosin RPGR 0.019 retinitis pigmentosa GTPase regulator isoform C [Hom... C10orf118 0.019 CTCL tumor antigen L14-2 HOOK3 0.018 golgi-associated microtubule-binding protein HOOK3 [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.