Guide to the Human Genome
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Name: DDX19B Sequence: fasta or formatted (479aa) NCBI GI: 6005743
Description:

DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1

Referenced in:

DEAD / H Helicase Family

Other entries for this name:
alt prot [370aa] DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3
alt prot [448aa] DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         39           3
 C cysteine            1.7          8           1
 D aspartate           5.4         26           2
 E glutamate           8.4         40           3
 F phenylalanine       3.1         15           1
 G glycine             4.6         22           1
 H histidine           1.5          7           1
 I isoleucine          5.6         27           1
 K lysine              7.9         38           2
 L leucine            10.2         49           2
 M methionine          2.7         13           2
 N asparagine          5.4         26           1
 P proline             4.0         19           2
 Q glutamine           6.1         29           1
 R arginine            4.8         23           1
 S serine              5.4         26           2
 T threonine           4.8         23           2
 V valine              7.3         35           2
 W tryptophan          0.8          4           1
 Y tyrosine            2.1         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H... 
DDX19A                0.966   DDX19-like protein 
DDX19B                0.916   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [...
DDX19B                0.774   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [...
DDX25                 0.647   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
EIF4A2                0.268   eukaryotic translation initiation factor 4A2 
EIF4A1                0.266   eukaryotic translation initiation factor 4A isoform 1...
EIF4A3                0.248   eukaryotic translation initiation factor 4A, isoform ...
BAT1                  0.202   HLA-B associated transcript 1 
BAT1                  0.202   HLA-B associated transcript 1 
DDX39                 0.199   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
DDX6                  0.193   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX20                 0.187   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX47                 0.154   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX27                 0.147   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX3X                 0.140   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX3Y                 0.140   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.140   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX42                 0.138   DEAD box polypeptide 42 protein 
DDX42                 0.138   DEAD box polypeptide 42 protein 
DDX49                 0.134   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX52                 0.130   ATP-dependent RNA helicase ROK1 isoform a 
DDX56                 0.129   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
DDX52                 0.125   ATP-dependent RNA helicase ROK1 isoform b 
DDX23                 0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX4                  0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX47                 0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX59                 0.124   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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