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Search of human proteins with 40316924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform alpha [Homo sapiens]
(89 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 182 4e-47
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 182 4e-47
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 182 4e-47
gi|10834978 interleukin 8 precursor [Homo sapiens] 44 2e-05
gi|22538814 small inducible cytokine A5 precursor [Homo sapiens] 43 5e-05
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 43 6e-05
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 42 1e-04
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 40 4e-04
gi|4759074 small inducible cytokine A16 precursor [Homo sapiens] 40 4e-04
gi|4885587 small inducible cytokine A13 precursor [Homo sapiens] 39 9e-04
gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo sapiens] 38 0.001
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 37 0.004
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 36 0.007
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 35 0.010
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 35 0.013
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 34 0.022
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 34 0.028
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 33 0.037
gi|22538804 small inducible cytokine A22 precursor [Homo sapiens] 32 0.082
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 32 0.11
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 32 0.11
gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens] 31 0.18
gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Hom... 31 0.18
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 31 0.18
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 31 0.18
gi|4506841 small inducible cytokine A2 precursor [Homo sapiens] 30 0.53
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens] 30 0.53
gi|22165427 small inducible cytokine A24 precursor [Homo sapiens] 30 0.53
gi|4506827 small inducible cytokine A11 precursor [Homo sapiens] 29 0.91
gi|4506855 chemokine (C motif) ligand 2 [Homo sapiens] 29 0.91
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
ARLKNNNRQVCIDPKLKWIQEYLEKALNK
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
ARLKNNNRQVCIDPKLKWIQEYLEKALNK
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal
cell-derived factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 182 bits (463), Expect = 4e-47
Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
Sbjct: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV 60
Query: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
ARLKNNNRQVCIDPKLKWIQEYLEKALNK
Sbjct: 61 ARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN 54
M +K+ V L+ L+ ALC P S RC C + + +K L+++ + P+
Sbjct: 1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 60
Query: 55 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
CA +I+ +L ++ R++C+DPK W+Q +EK L +
Sbjct: 61 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKR 95
>gi|22538814 small inducible cytokine A5 precursor [Homo sapiens]
Length = 91
Score = 43.1 bits (100), Expect = 5e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 7 VVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVK-HLK--ILNTPNCALQIVARL 63
+ ++L+ TALC S PC F +++AR + H+K + C+ V +
Sbjct: 8 LAVILIATALCAPASASPYSSDTTPCCF--AYIARPLPRAHIKEYFYTSGKCSNPAVVFV 65
Query: 64 KNNNRQVCIDPKLKWIQEYL 83
NRQVC +P+ KW++EY+
Sbjct: 66 TRKNRQVCANPEKKWVREYI 85
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 42.7 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G V RC C + N++ + + + P+CA +++A
Sbjct: 17 RVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNK 89
LKN ++ C++P +Q+ +EK LNK
Sbjct: 77 TLKNG-KKACLNPASPMVQKIIEKILNK 103
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G P++ RC C + N++ +K+ + P+CA +++A
Sbjct: 17 RVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSVKVKSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKAL 87
LKN + C++P +++ +EK L
Sbjct: 77 TLKNGQK-ACLNPASPMVKKIIEKML 101
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 40.0 bits (92), Expect = 4e-04
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
+V ++L+L++ A + G V+ RC C + N++ + + + P+CA +++A
Sbjct: 17 RVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSVNVKSPGPHCAQTEVIA 76
Query: 62 RLKNNNRQVCIDPKLKWIQEYLEKALN 88
LKN R+ C++P +++ +EK LN
Sbjct: 77 TLKNG-RKACLNPASPIVKKIIEKMLN 102
>gi|4759074 small inducible cytokine A16 precursor [Homo sapiens]
Length = 120
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 6 VVVLVLVLTALCLSDGKP---VSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVAR 62
++VL+L++T+ S K V+ C +++E + R V + NC L +
Sbjct: 10 LLVLILIITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYR--KALNCHLPAIIF 67
Query: 63 LKNNNRQVCIDPKLKWIQEYLE 84
+ NR+VC +P W+QEY++
Sbjct: 68 VTKRNREVCTNPNDDWVQEYIK 89
>gi|4885587 small inducible cytokine A13 precursor [Homo sapiens]
Length = 98
Score = 38.9 bits (89), Expect = 9e-04
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 1 MNAKVVVVLVLVLTALCLSDG--KPVSLSYRCPCRFFESHVARANVKHLK--ILNTPNCA 56
M V++ +L++TA G +P +L+ C F S + +++ LK ++ T C
Sbjct: 1 MKVSAVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSS-KKISLQRLKSYVITTSRCP 59
Query: 57 LQIVARLKNNNRQVCIDPKLKWIQEYLE 84
+ V +++C DPK KW+Q Y++
Sbjct: 60 QKAVIFRTKLGKEICADPKEKWVQNYMK 87
>gi|13435402 chemokine (C-C motif) ligand 7 precursor [Homo
sapiens]
Length = 99
Score = 38.1 bits (87), Expect = 0.001
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 8 VLVLVLTALCLSD---GKPVSLSYRCPC--RFFESHVARANVKHLKILNTPNCALQIVAR 62
+L L+LTA S +PV ++ C RF + + ++ + + +C + V
Sbjct: 7 LLCLLLTAAAFSPQGLAQPVGINTSTTCCYRFINKKIPKQRLESYRRTTSSHCPREAVIF 66
Query: 63 LKNNNRQVCIDPKLKWIQEYLE 84
++++C DP KW+Q++++
Sbjct: 67 KTKLDKEICADPTQKWVQDFMK 88
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSL---SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQI 59
++ +L+L+ L+ PVS RC C V + L++ P C+ +++
Sbjct: 21 LLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGPQCSKVEV 80
Query: 60 VARLKNNNRQVCIDPKLKWIQEYLEKALN 88
VA LKN +QVC+DP+ ++++ ++K L+
Sbjct: 81 VASLKNG-KQVCLDPEAPFLKKVIQKILD 108
>gi|149999382 small inducible cytokine B10 precursor [Homo
sapiens]
Length = 98
Score = 35.8 bits (81), Expect = 0.007
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESH-VARANVKHLKILNTPNCA--L 57
MN +++ L+ L G P+S + RC C + V +++ L+I+ +
Sbjct: 1 MNQTAILICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRV 60
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
+I+A +K + C++P+ K I+ L KA++K
Sbjct: 61 EIIATMKKKGEKRCLNPESKAIKNLL-KAVSK 91
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 35.4 bits (80), Expect = 0.010
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 19/102 (18%)
Query: 4 KVVVVLVLVLTALC----------LSDGKPVSLS------YRCPCRFFESHVARANVKHL 47
+V+++L L+LTAL L+ GK SL RC C S + N++ L
Sbjct: 21 QVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSL 80
Query: 48 KILNT-PNC-ALQIVARLKNNNRQVCIDPKLKWIQEYLEKAL 87
+++ +C ++++A LK+ R++C+DP I++ ++K L
Sbjct: 81 EVIGKGTHCNQVEVIATLKDG-RKICLDPDAPRIKKIVQKKL 121
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 35.0 bits (79), Expect = 0.013
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 52 TPNCALQIVARLKNNNRQVCIDPKLKWIQEYL 83
+P C V L RQ+C DP KW+Q+Y+
Sbjct: 51 SPQCPKPGVILLTKRGRQICADPNKKWVQKYI 82
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 34.3 bits (77), Expect = 0.022
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 3 AKVVVVLVLVLTALCLSDGKPVSL--SYRCPCRFFESHVARANVKHLKILNT-PNCA-LQ 58
A +V++L+L S G ++ RC C V + +L++ P C+ ++
Sbjct: 20 ALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQCSKVE 79
Query: 59 IVARLKNNNRQVCIDPKLKWIQEYLEKALN 88
+VA LKN +++C+DP+ ++++ ++K L+
Sbjct: 80 VVASLKNG-KEICLDPEAPFLKKVIQKILD 108
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 33.9 bits (76), Expect = 0.028
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 7 VVLVLVLTALCLSDG--KPVSLSYRCPCRFFES-HVARANVKHLKILNTPN-CALQIVAR 62
++L+L++++L G + S RC C S + R + ++IL N C + +
Sbjct: 8 LLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCPRKEIIV 67
Query: 63 LKNNNRQVCIDPKLKWIQEYLE 84
K N VC+DP+ +WIQ +E
Sbjct: 68 WKKNKSIVCVDPQAEWIQRMME 89
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILN----TPNC-ALQI 59
V+ +L ++L L G PV RC C ++ +++ LK L +P+C ++I
Sbjct: 6 VLFLLGIILLVLIGVQGTPVVRKGRCSC--ISTNQGTIHLQSLKDLKQFAPSPSCEKIEI 63
Query: 60 VARLKNNNRQVCIDPKLKWIQEYLEK 85
+A LK N Q C++P ++E ++K
Sbjct: 64 IATLK-NGVQTCLNPDSADVKELIKK 88
>gi|22538804 small inducible cytokine A22 precursor [Homo sapiens]
Length = 93
Score = 32.3 bits (72), Expect = 0.082
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYR---CPCRFFESHVARANVKHLKILNTPNCAL 57
+ ++VVLVL+ AL ++ P + C + + VKH + +C
Sbjct: 4 LQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHF-YWTSDSCPR 62
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEK 85
V L ++++C DP++ W++ L K
Sbjct: 63 PGVVLLTFRDKEICADPRVPWVKMILNK 90
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCALQIVA 61
V+ +LVLV L+ P+ C F S+ AR ++ + + C+ V
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCF--SYTARKLPRNFVVDYYETSSLCSQPAVV 64
Query: 62 RLKNNNRQVCIDPKLKWIQEYL 83
+QVC DP W+QEY+
Sbjct: 65 FQTKRGKQVCADPSESWVQEYV 86
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 VVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCALQIVA 61
V+ +LVLV L+ P+ C F S+ AR ++ + + C+ V
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCF--SYTARKLPRNFVVDYYETSSLCSQPAVV 64
Query: 62 RLKNNNRQVCIDPKLKWIQEYL 83
+QVC DP W+QEY+
Sbjct: 65 FQTKRGKQVCADPSESWVQEYV 86
>gi|4506843 chemokine (C-C motif) ligand 3 [Homo sapiens]
Length = 92
Score = 31.2 bits (69), Expect = 0.18
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 9 LVLVLTALCLSDGKPVSLSYRCP---CRFFESHVARANVKHLKILNTPNCALQIVARLKN 65
L ++L + L + SL+ P C + S N + C+ V L
Sbjct: 8 LAVLLCTMALCNQFSASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTK 67
Query: 66 NNRQVCIDPKLKWIQEYL 83
+RQVC DP +W+Q+Y+
Sbjct: 68 RSRQVCADPSEEWVQKYV 85
>gi|4506845 chemokine C-C motif ligand 4 isoform 1 precursor [Homo
sapiens]
Length = 92
Score = 31.2 bits (69), Expect = 0.18
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKI---LNTPNCAL 57
M V V+ +L+L A S + P S+ AR ++ + + C+
Sbjct: 1 MKLCVTVLSLLMLVAAFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQ 60
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYL 83
V ++QVC DP W+QEY+
Sbjct: 61 PAVVFQTKRSKQVCADPSESWVQEYV 86
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 55 CALQIVARLKNNNRQVCIDPKLKWIQEYL 83
C+ V L RQVC DP +W+Q+Y+
Sbjct: 58 CSKPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 55 CALQIVARLKNNNRQVCIDPKLKWIQEYL 83
C+ V L RQVC DP +W+Q+Y+
Sbjct: 58 CSKPSVIFLTKRGRQVCADPSEEWVQKYV 86
>gi|4506841 small inducible cytokine A2 precursor [Homo sapiens]
Length = 99
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 1 MNAKVVVVLVLVLTALCLSDG----KPVSLSYRCPCRFFESHVARANVKHLKILNTPNCA 56
M ++ +L++ A + G ++ C F ++ + + + + C
Sbjct: 1 MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCP 60
Query: 57 LQIVARLKNNNRQVCIDPKLKWIQEYLE 84
+ V +++C DPK KW+Q+ ++
Sbjct: 61 KEAVIFKTIVAKEICADPKQKWVQDSMD 88
>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
Length = 94
Score = 29.6 bits (65), Expect = 0.53
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 1 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVAR-ANVKHLKILN-TPNC-AL 57
M+ K + + + V+ + G P+ RC C + A+++ I+ + NC +
Sbjct: 1 MSVKGMAIALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKI 60
Query: 58 QIVARLKNNNRQVCIDPKLKWIQEYLEKALNK 89
+++ LK N Q C++PK K + ++K K
Sbjct: 61 EVIITLKENKGQRCLNPKSKQARLIIKKVERK 92
>gi|22165427 small inducible cytokine A24 precursor [Homo sapiens]
Length = 119
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 32 CRFFES-HVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYLE 84
C FF S + V ++ + C V +Q C DPK +W+Q Y++
Sbjct: 34 CMFFVSKRIPENRVVSYQLSSRSTCLKAGVIFTTKKGQQFCGDPKQEWVQRYMK 87
>gi|4506827 small inducible cytokine A11 precursor [Homo sapiens]
Length = 97
Score = 28.9 bits (63), Expect = 0.91
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1 MNAKVVVVLVLVLTALCLSDGK--PVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQ 58
M ++ +L++ A G P S+ C + ++ + + + C +
Sbjct: 1 MKVSAALLWLLLIAAAFSPQGLAGPASVPTTCCFNLANRKIPLQRLESYRRITSGKCPQK 60
Query: 59 IVARLKNNNRQVCIDPKLKWIQEYLE 84
V + +C DPK KW+Q+ ++
Sbjct: 61 AVIFKTKLAKDICADPKKKWVQDSMK 86
>gi|4506855 chemokine (C motif) ligand 2 [Homo sapiens]
Length = 114
Score = 28.9 bits (63), Expect = 0.91
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 8 VLVLVLTALC-----LSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVAR 62
+L+L L +C + +G +S+R C + R V +K +L+ V
Sbjct: 3 LLILALLGICSLTAYIVEGVGSEVSHRRTCVSLTTQ--RLPVSRIKTYTITEGSLRAVIF 60
Query: 63 LKNNNRQVCIDPKLKWIQE 81
+ +VC DP+ W+++
Sbjct: 61 ITKRGLKVCADPQATWVRD 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,187,417
Number of Sequences: 37866
Number of extensions: 109381
Number of successful extensions: 323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 291
Number of HSP's gapped (non-prelim): 38
length of query: 89
length of database: 18,247,518
effective HSP length: 61
effective length of query: 28
effective length of database: 15,937,692
effective search space: 446255376
effective search space used: 446255376
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.