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Search of human proteins with 40255094
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40255094 hypothetical protein LOC159090 [Homo sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40255094 hypothetical protein LOC159090 [Homo sapiens] 491 e-139
gi|49472830 hypothetical protein LOC116224 [Homo sapiens] 296 1e-80
gi|20270387 hypothetical protein LOC159091 [Homo sapiens] 92 5e-19
gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens] 37 0.012
gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens] 37 0.016
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 36 0.027
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 36 0.027
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 36 0.027
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.046
gi|10190674 fibroblast growth factor 23 precursor [Homo sapiens] 35 0.079
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 35 0.079
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 35 0.079
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 35 0.079
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 34 0.14
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 34 0.14
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 34 0.14
gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens] 33 0.18
gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens] 33 0.18
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 33 0.18
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 33 0.18
gi|19924099 synapsin I isoform Ia [Homo sapiens] 33 0.23
gi|19924097 synapsin I isoform Ib [Homo sapiens] 33 0.23
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 33 0.23
gi|91982772 mucin 17 [Homo sapiens] 32 0.39
gi|117938768 GNAS complex locus alex [Homo sapiens] 32 0.51
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 32 0.51
gi|197276600 microtubule-associated protein 4 isoform 4 [Homo sa... 32 0.51
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 32 0.51
gi|47519639 microtubule-associated protein 4 isoform 1 [Homo sap... 32 0.51
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 32 0.51
>gi|40255094 hypothetical protein LOC159090 [Homo sapiens]
Length = 248
Score = 491 bits (1264), Expect = e-139
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE 60
MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE
Sbjct: 1 MAQEKMELDLEPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLE 60
Query: 61 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP 120
EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP
Sbjct: 61 EGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP 120
Query: 121 TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL 180
TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL
Sbjct: 121 TRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL 180
Query: 181 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI 240
FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI
Sbjct: 181 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFI 240
Query: 241 LMDDLSPK 248
LMDDLSPK
Sbjct: 241 LMDDLSPK 248
>gi|49472830 hypothetical protein LOC116224 [Homo sapiens]
Length = 287
Score = 296 bits (757), Expect = 1e-80
Identities = 175/290 (60%), Positives = 196/290 (67%), Gaps = 45/290 (15%)
Query: 1 MAQEKMELDLE--PDTSY----------GGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
MAQEKMELDLE P T GG LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 49 NSTTIMSRHSL-------------------EEGLDMVNRETAHEREMQTAMQISQSWDES 89
NSTT SRH L EEG+D++NRET HERE+QTAMQIS SW+ES
Sbjct: 61 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 120
Query: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKM--------FVSSSGLPPSPVPS 141
SLSD+D EK SPKRIDF PVSPAPSPTRG GK FVSS+GLPPSP+PS
Sbjct: 121 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPS 177
Query: 142 PR-RFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSS 200
P RF++RRSQSP+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 178 PTTRFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 237
Query: 201 C--SDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSSFILMDDLSPK 248
C SD LDG+SSS+G S + AK S T +SPV+ + + S FI +D+LS K
Sbjct: 238 CVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPLDELSSK 287
>gi|20270387 hypothetical protein LOC159091 [Homo sapiens]
Length = 152
Score = 91.7 bits (226), Expect = 5e-19
Identities = 62/149 (41%), Positives = 79/149 (53%), Gaps = 26/149 (17%)
Query: 1 MAQEKMELDLEP----DTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSR 56
MAQEKM+L + T+ G LRR +SAPLI+GL SQV Q LR R N TT +R
Sbjct: 1 MAQEKMKLGFKSLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRIRTNRTTFRNR 60
Query: 57 HSL-------------------EEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDF 97
SL EE +D++NRET E ++Q+ +QIS SW+E L L+D+
Sbjct: 61 RSLLLPPPPFHGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEGLKLNDNGL 120
Query: 98 DKPEKLYSPKRIDFTPVSPAPSPTRGFGK 126
K L K ID TPVS S + GK
Sbjct: 121 QKSSSL---KCIDLTPVSSMASSIKKTGK 146
>gi|37577175 ring finger protein 38 isoform 1 [Homo sapiens]
Length = 515
Score = 37.4 bits (85), Expect = 0.012
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 75 EMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGL 134
+ T +Q + DS K ++L S D+T SPAPSP +M +S+
Sbjct: 38 DQNTTVQEDAHFKAFFQSEDSPSPKRQRL-SHSVFDYTSASPAPSPPMRPWEM--TSNRQ 94
Query: 135 PPSPVPSPRRFSSRRSQSPVK 155
PPS PS FS R +P +
Sbjct: 95 PPSVRPSQHHFSGERCNTPAR 115
>gi|37577179 ring finger protein 38 isoform 3 [Homo sapiens]
Length = 465
Score = 37.0 bits (84), Expect = 0.016
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 99 KPEKLYSPKR-------IDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQ 151
K E SPKR D+T SPAPSP +M +S+ PPS PS FS R
Sbjct: 4 KSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWEM--TSNRQPPSVRPSQHHFSGERCN 61
Query: 152 SPVK 155
+P +
Sbjct: 62 TPAR 65
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.2 bits (82), Expect = 0.027
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 113 PVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEME 172
P P P+P SS P P PSP S+ +QSP+ + P+V
Sbjct: 790 PTVPLPAP----------SSSASPHPCPSP--LSNATAQSPLPILSPTV-------SPSP 830
Query: 173 TESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAES 228
+ P + P + S SS S SSSSS S PL+ S+ S
Sbjct: 831 SPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSS 886
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 36.2 bits (82), Expect = 0.027
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 113 PVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEME 172
P P P+P SS P P PSP S+ +QSP+ + P+V
Sbjct: 991 PTVPLPAP----------SSSASPHPCPSP--LSNATAQSPLPILSPTV-------SPSP 1031
Query: 173 TESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAES 228
+ P + P + S SS S SSSSS S PL+ S+ S
Sbjct: 1032 SPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSS 1087
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 36.2 bits (82), Expect = 0.027
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 113 PVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEME 172
P P P+P SS P P PSP S+ +QSP+ + P+V
Sbjct: 991 PTVPLPAP----------SSSASPHPCPSP--LSNATAQSPLPILSPTV-------SPSP 1031
Query: 173 TESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAES 228
+ P + P + S SS S SSSSS S PL+ S+ S
Sbjct: 1032 SPIPPVEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSS 1087
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.4 bits (80), Expect = 0.046
Identities = 41/163 (25%), Positives = 55/163 (33%), Gaps = 23/163 (14%)
Query: 69 ETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMF 128
+ A ER ++ S S S S S S S PV P + R
Sbjct: 2525 QPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKR------ 2578
Query: 129 VSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNML 188
PSP P+P+ V+ RP P KRK + S +++
Sbjct: 2579 ------VPSPTPAPKE--------AVREGRPPEPTPAKRKRRSSSSSSSS---SSSSSSS 2621
Query: 189 SPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVA 231
S ++ S SS S SSSSS S P G P +
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPAS 2664
Score = 32.3 bits (72), Expect = 0.39
Identities = 30/121 (24%), Positives = 43/121 (35%), Gaps = 3/121 (2%)
Query: 40 QPYTLRTRRNSTTIMSRHSLEEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDK 99
QP R S T + ++ EG +R ++ S S S S S S
Sbjct: 2571 QPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSS 2630
Query: 100 PEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRP 159
S + S +PSP + G + P P P RR SR + P+ +R
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKP-GPQALPKPASPKKPPPGERR--SRSPRKPIDSLRD 2687
Query: 160 S 160
S
Sbjct: 2688 S 2688
Score = 28.5 bits (62), Expect = 5.7
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 100 PEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSP---RRFSS-----RRSQ 151
PEKL + +P SP P+ SSS P P P+P R SS RS
Sbjct: 409 PEKLPQSSSSESSPPSPQPTKV----SRHASSSPESPKPAPAPGSHREISSSPTSKNRSH 464
Query: 152 SPVKCIRPSVLGPLKRKGEMETESQPKR 179
K + P +R G + + KR
Sbjct: 465 GRAKRDKSHSHTPSRRMGRSRSPATAKR 492
Score = 27.7 bits (60), Expect = 9.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 89 SLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFS-- 146
+ +SDS D + P+R PAP P + + + SSS P+P ++
Sbjct: 138 AFGISDSYVDGSS--FDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKD 195
Query: 147 -SRRSQSPVKCIRPSVLGPLKRKGEMETESQPKR 179
RRS+S R K+K E+ES+ ++
Sbjct: 196 RGRRSESS-SPRRERKKSSKKKKHRSESESKKRK 228
>gi|10190674 fibroblast growth factor 23 precursor [Homo sapiens]
Length = 251
Score = 34.7 bits (78), Expect = 0.079
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 134 LPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAA 193
LP P +F SRR++ P+ + R E ++E P N+L P A
Sbjct: 146 LPGMNPPPYSQFLSRRNEIPLIHFNTPIPRRHTRSAEDDSERDP-------LNVLKPRAR 198
Query: 194 QLSDLSSCSDILDGSSSSSGLSSDPL 219
+SCS L + +S ++SDPL
Sbjct: 199 MTPAPASCSQELPSAEDNSPMASDPL 224
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 34.7 bits (78), Expect = 0.079
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 69 ETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMF 128
+ A E E ++ + +S + + SD KP+ +P P P P P G GK
Sbjct: 154 QNAQENENESQVSTDESENSRSPGNKSDNIKPKS--APWNSFLPPPPPMPGPRLGPGKPG 211
Query: 129 VSSSGLPPSPVPSP 142
+ +G PP P P P
Sbjct: 212 LKFNGPPPPPPPPP 225
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 34.7 bits (78), Expect = 0.079
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 69 ETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMF 128
+ A E E ++ + +S + + SD KP+ +P P P P P G GK
Sbjct: 154 QNAQENENESQVSTDESENSRSPGNKSDNIKPKS--APWNSFLPPPPPMPGPRLGPGKPG 211
Query: 129 VSSSGLPPSPVPSP 142
+ +G PP P P P
Sbjct: 212 LKFNGPPPPPPPPP 225
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 34.7 bits (78), Expect = 0.079
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 69 ETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMF 128
+ A E E ++ + +S + + SD KP+ +P P P P P G GK
Sbjct: 154 QNAQENENESQVSTDESENSRSPGNKSDNIKPKS--APWNSFLPPPPPMPGPRLGPGKPG 211
Query: 129 VSSSGLPPSPVPSP 142
+ +G PP P P P
Sbjct: 212 LKFNGPPPPPPPPP 225
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 33.9 bits (76), Expect = 0.14
Identities = 37/131 (28%), Positives = 53/131 (40%), Gaps = 30/131 (22%)
Query: 130 SSSGLPPSPVPSPRRFSSRRSQSP----------VKCIRPSVLGPLKRKGEMETESQPKR 179
SS P P P + QSP + + P LGP + GE ET +Q +
Sbjct: 2767 SSQQQPTLPTPPALGEVPQELQSPAGEGGSSTQLLMPVEPEELGPTRPSGEAET-TQMEL 2825
Query: 180 LFQGTTNMLSPDAAQLSD-LSSCSDILDGS------------------SSSSGLSSDPLA 220
T LSP+ A+ SD L++ S L+GS +S++G S P A
Sbjct: 2826 SPAPTITSLSPERAEDSDALTAVSSQLEGSPMDTSSLASCTLEEAVGDTSAAGSSEQPRA 2885
Query: 221 KGSATAESPVA 231
S ++P A
Sbjct: 2886 GSSTPGDAPPA 2896
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 33.9 bits (76), Expect = 0.14
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 98 DKPEKLYSPKRIDFTP-VSPAPSPTRGF------GKMFVSSSGLPPSPVPSPRRFSSRRS 150
+ P P + P V+P P P R F S+GLPPSP P+ +
Sbjct: 367 NSPSSQRLPSKSSLDPAVNPVPKPKRTFEYEADKNPKSKPSNGLPPSPTPA--------A 418
Query: 151 QSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSS 210
P+ PS P +PK+ +G S + + D SS + S +
Sbjct: 419 PPPL----PSTPAP-------PVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYPSSPT 467
Query: 211 SSGLSSDPLAKGSATAE 227
+G + P +T E
Sbjct: 468 ENGTENQPKFGSKSTLE 484
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo
sapiens]
Length = 1137
Score = 33.9 bits (76), Expect = 0.14
Identities = 33/137 (24%), Positives = 50/137 (36%), Gaps = 26/137 (18%)
Query: 98 DKPEKLYSPKRIDFTP-VSPAPSPTRGF------GKMFVSSSGLPPSPVPSPRRFSSRRS 150
+ P P + P V+P P P R F S+GLPPSP P+ +
Sbjct: 367 NSPSSQRLPSKSSLDPAVNPVPKPKRTFEYEADKNPKSKPSNGLPPSPTPA--------A 418
Query: 151 QSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSS 210
P+ PS P +PK+ +G S + + D SS + S +
Sbjct: 419 PPPL----PSTPAP-------PVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYPSSPT 467
Query: 211 SSGLSSDPLAKGSATAE 227
+G + P +T E
Sbjct: 468 ENGTENQPKFGSKSTLE 484
>gi|39812496 Sp8 transcription factor isoform 1 [Homo sapiens]
Length = 508
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 111 FTPVSP------APSPTRGFGKMFVSSSGLPP---SPVPSPRRFSSRRSQSPVKCIRPSV 161
F PV P APSP G G +S+ P SP S RR+S R + C
Sbjct: 301 FKPVLPGSYPDSAPSPLAGAGGSMLSAGPSAPLGGSPRSSARRYSGRATCDCPNCQEAER 360
Query: 162 LGP----LKRKG 169
LGP L+RKG
Sbjct: 361 LGPAGASLRRKG 372
>gi|39812501 Sp8 transcription factor isoform 2 [Homo sapiens]
Length = 490
Score = 33.5 bits (75), Expect = 0.18
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 111 FTPVSP------APSPTRGFGKMFVSSSGLPP---SPVPSPRRFSSRRSQSPVKCIRPSV 161
F PV P APSP G G +S+ P SP S RR+S R + C
Sbjct: 283 FKPVLPGSYPDSAPSPLAGAGGSMLSAGPSAPLGGSPRSSARRYSGRATCDCPNCQEAER 342
Query: 162 LGP----LKRKG 169
LGP L+RKG
Sbjct: 343 LGPAGASLRRKG 354
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.5 bits (75), Expect = 0.18
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 159 PSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDP 218
P P G++ E P F+ + N SPD AQ ++ + SSSSSG SS
Sbjct: 2513 PKAPWPKATDGDLAQEPGPGLTFEDSGNPKSPDKAQ-AEQDGAEESESSSSSSSGSSSSS 2571
Query: 219 LAKGSATAES 228
+ S+ +E+
Sbjct: 2572 SSSSSSGSET 2581
Score = 28.5 bits (62), Expect = 5.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 189 SPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSS 238
S ++ S SS S SSSSS SS + S+++ S +SCSS
Sbjct: 2632 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCSS 2681
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 33.5 bits (75), Expect = 0.18
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 12/134 (8%)
Query: 106 PKRIDFTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPL 165
P+ + + P P T+ G + P V + PV + P
Sbjct: 502 PEDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKL-----TEVPVEPVLTVHP------ 550
Query: 166 KRKGEMETESQPK-RLFQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSA 224
+ K + +T S+ + R T+ S ++ S SS + GSSSSSG SS + S+
Sbjct: 551 ESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610
Query: 225 TAESPVACSNSCSS 238
++ S + +S SS
Sbjct: 611 SSTSGSSSRDSSSS 624
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 100 PEKLYSPKRIDFTPVSPAPSPTRGFGKM---FVSSSGLPPSPVPSPRRFSSRRSQSPVKC 156
P++L SP P S A PT+G G+ G PP+ P R++ P
Sbjct: 505 PQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQAT 564
Query: 157 IRPSVLGPLKRK 168
+ SV GP K
Sbjct: 565 RQTSVSGPAPPK 576
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 33.1 bits (74), Expect = 0.23
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 100 PEKLYSPKRIDFTPVSPAPSPTRGFGKM---FVSSSGLPPSPVPSPRRFSSRRSQSPVKC 156
P++L SP P S A PT+G G+ G PP+ P R++ P
Sbjct: 505 PQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQAT 564
Query: 157 IRPSVLGPLKRK 168
+ SV GP K
Sbjct: 565 RQTSVSGPAPPK 576
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 33.1 bits (74), Expect = 0.23
Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 43/238 (18%)
Query: 11 EPDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLEEGLDMVNRET 70
+P+ S+ R S + + H + + + Q Y + + T + R +G+ + +
Sbjct: 1989 DPELSFMAAQRNYSQSKMAHSRTS-TPLLQQYQVALSASPLTSLPRLLDAKGIILEEMKV 2047
Query: 71 AHER---EMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGK- 126
E E Q++ + S S E+ +L S+ P+ P+ A + GK
Sbjct: 2048 KSENLKEEPQSSEEESMSSVETRTLIKSEPVSPKNGVLPQ---------ATGDQKSGGKC 2098
Query: 127 ------MFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRL 180
+ + L P+P R R S+S +++S +R
Sbjct: 2099 ETDRRMVAARTEPLTPNPASKKPRVHKRGSES-----------------SSDSDSDSER- 2140
Query: 181 FQGTTNMLSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSNSCSS 238
+ S ++ S SSCS GSSSSS S + S+++ S + S+S SS
Sbjct: 2141 -----SSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSS 2193
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 32.3 bits (72), Expect = 0.39
Identities = 51/227 (22%), Positives = 81/227 (35%), Gaps = 22/227 (9%)
Query: 24 SSAPLIHGLSDLSQVFQPYTLRTRRN-----STTIMSRHSLEEGLDMVNRETAHEREMQT 78
+S P+ H L S+V T N ST S EG M ++ T
Sbjct: 2282 TSIPVSHTLVANSEVSTLSTTPVDSNTPFTTSTEASSPPPTAEGTSMPTSTSSEGNTPLT 2341
Query: 79 AMQISQSWDES-----LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSSG 133
M +S + S LS + +D P YS T PT + + +
Sbjct: 2342 RMPVSTTMVASFETSTLSTTPADTSTPVTTYSQAGSSPTTADDTSMPTSTYSEGSTPLTS 2401
Query: 134 LPPSPVPSPRRFSSRRSQSPVKCIRP------SVLGPLKRKGEMETESQPKRLFQGTTNM 187
+P S +P +S S +PV P + P +G S P +GTT +
Sbjct: 2402 VPVSTMPVVSSEASTHSTTPVDTSTPVTTSTEASSSPTTAEGTSIPTSPPS---EGTTPL 2458
Query: 188 LSPDAAQLSDLSSCSDILDGSSSSSGLSSDPLAKGSATAESPVACSN 234
S + +SS + L S++ +S P+ + + SP +
Sbjct: 2459 ASMPVSTTPVVSSEAGTL---STTPVDTSTPMTTSTEASSSPTTAED 2502
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 32.0 bits (71), Expect = 0.51
Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 99 KPEKLYSPKRID--FTPVSPAPSPTRGFGKMFVSSSGLPPSPVPSP-RRFSSRRSQSPVK 155
+P+K+ +P + TP P PT G LPP P+P+P R + + +P +
Sbjct: 344 QPQKIPTPGQHQPILTPGHSQPIPTPG--------QPLPPQPIPTPGRPLTPQPIPTPGR 395
Query: 156 CIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSSCSDIL-DGSSSSSGL 214
+ P P++ G P RL + M SP Q L +L G S+G
Sbjct: 396 PLTPQ---PIQMPGRPLRLPPPLRLLRPGQPM-SPQLRQTQGLPLPQPLLPPGQPKSAGR 451
Query: 215 SSDPLAKG 222
PL G
Sbjct: 452 PLQPLPPG 459
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 113 PVSPAPSPTRGFGK--MFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGE 170
P PAP+ G K M ++S +P +P P S+R S P K ++P + K +
Sbjct: 460 PKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEK 519
Query: 171 METESQP 177
+ S+P
Sbjct: 520 RASPSKP 526
>gi|197276600 microtubule-associated protein 4 isoform 4 [Homo
sapiens]
Length = 1135
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 113 PVSPAPSPTRGFGK--MFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGE 170
P PAP+ G K M ++S +P +P P S+R S P K ++P + K +
Sbjct: 725 PKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEK 784
Query: 171 METESQP 177
+ S+P
Sbjct: 785 RASPSKP 791
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 113 PVSPAPSPTRGFGK--MFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGE 170
P PAP+ G K M ++S +P +P P S+R S P K ++P + K +
Sbjct: 460 PKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEK 519
Query: 171 METESQP 177
+ S+P
Sbjct: 520 RASPSKP 526
>gi|47519639 microtubule-associated protein 4 isoform 1 [Homo
sapiens]
Length = 1152
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 113 PVSPAPSPTRGFGK--MFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGE 170
P PAP+ G K M ++S +P +P P S+R S P K ++P + K +
Sbjct: 725 PKQPAPTTIGGLNKKPMSLASGLVPAAPPKRPAVASARPSILPSKDVKPKPIADAKAPEK 784
Query: 171 METESQP 177
+ S+P
Sbjct: 785 RASPSKP 791
>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
Length = 1385
Score = 32.0 bits (71), Expect = 0.51
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 59 LEEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPE-KLYSPKRIDF--TPVS 115
+ G + N ++ + ++Q S S DF +P +L S + P S
Sbjct: 1220 MRRGESLDNLDSPRSNSWRQPPWLNQPTGFYASSSVQDFSRPPPQLVSTSNRAYMRNPSS 1279
Query: 116 PAPSPTRGFGKMFVSSSGLPPSPVPSPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETES 175
P P+ G K S++G+ + P+PR S SQS + +R SVL P+ + +E+
Sbjct: 1280 SVPPPSAGSVK--TSTTGVATTQSPTPRSHSPSASQSGSQ-LRNSVL-PV----SVTSEA 1331
Query: 176 QPKRLFQG--TTNMLSPDAAQLSDL 198
P+ L G TTN + A S+L
Sbjct: 1332 LPQELKSGSETTNCTATTAISDSNL 1356
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.125 0.353
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,327,006
Number of Sequences: 37866
Number of extensions: 547489
Number of successful extensions: 2845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 2625
Number of HSP's gapped (non-prelim): 382
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.