SMN1 29475

Name: SMN1	Sequence: fasta or formatted (294aa)		NCBI GI: 4507091
Description: survival of motor neuron 1, telomeric isoform d		Referenced in: DEAD / H Helicase Family Nucleus and Nucleolus Capping and Splicing
Other entries for this name: alt prot [262aa] survival of motor neuron 1, telomeric isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.8 17 2 C cysteine 2.7 8 1 D aspartate 6.1 18 2 E glutamate 5.1 15 2 F phenylalanine 2.4 7 1 G glycine 8.5 25 3 H histidine 1.4 4 1 I isoleucine 4.8 14 2 K lysine 7.5 22 2 L leucine 5.8 17 2 M methionine 2.0 6 1 N asparagine 5.8 17 2 P proline 13.3 39 10 Q glutamine 3.7 11 2 R arginine 3.1 9 2 S serine 10.5 31 2 T threonine 3.7 11 2 V valine 3.1 9 3 W tryptophan 2.0 6 1 Y tyrosine 2.7 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 survival of motor neuron 1, telomeric isoform d [Homo... SMN2 1.000 survival of motor neuron 2, centromeric isoform d [H... SMN2 0.944 survival of motor neuron 2, centromeric isoform a [H... SMN2 0.843 survival of motor neuron 2, centromeric isoform b [H... SMN1 0.843 survival of motor neuron 1, telomeric isoform b [Hom... SMN2 0.785 survival of motor neuron 2, centromeric isoform c [H... FMN1 0.065 formin 1 FMNL1 0.061 formin-like 1 DIAPH1 0.060 diaphanous 1 isoform 2 DIAPH1 0.060 diaphanous 1 isoform 1 SETD1B 0.058 SET domain containing 1B ZC3H4 0.058 zinc finger CCCH-type containing 4 SMNDC1 0.058 survival motor neuron domain containing 1 FMN2 0.058 formin 2 ENAH 0.056 enabled homolog isoform a ENAH 0.056 enabled homolog isoform b DIAPH3 0.055 diaphanous homolog 3 isoform b DIAPH3 0.055 diaphanous homolog 3 isoform a INF2 0.053 inverted formin 2 isoform 2 INF2 0.053 inverted formin 2 isoform 1 WASL 0.053 Wiskott-Aldrich syndrome gene-like protein SETD1A 0.053 SET domain containing 1A LOC645529 0.053 PREDICTED: similar to Putative acrosin-like proteas... CCNK 0.050 cyclin K isoform 1 CPSF6 0.050 cleavage and polyadenylation specific factor 6, 68 ... WASF2 0.050 WAS protein family, member 2 ZFHX4 0.050 zinc finger homeodomain 4 PRR12 0.048 proline rich 12 DIAPH2 0.048 diaphanous 2 isoform 12C DIAPH2 0.048 diaphanous 2 isoform 156 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.