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Name: SMN1 Sequence: fasta or formatted (294aa) NCBI GI: 4507091
Description:

survival of motor neuron 1, telomeric isoform d

Referenced in:

DEAD / H Helicase Family
Nucleus and Nucleolus
Capping and Splicing

Other entries for this name:
alt prot [262aa] survival of motor neuron 1, telomeric isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         17           2
 C cysteine            2.7          8           1
 D aspartate           6.1         18           2
 E glutamate           5.1         15           2
 F phenylalanine       2.4          7           1
 G glycine             8.5         25           3
 H histidine           1.4          4           1
 I isoleucine          4.8         14           2
 K lysine              7.5         22           2
 L leucine             5.8         17           2
 M methionine          2.0          6           1
 N asparagine          5.8         17           2
 P proline            13.3         39          10
 Q glutamine           3.7         11           2
 R arginine            3.1          9           2
 S serine             10.5         31           2
 T threonine           3.7         11           2
 V valine              3.1          9           3
 W tryptophan          2.0          6           1
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   survival of motor neuron 1, telomeric isoform d [Homo... 
SMN2                  1.000   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.944   survival of motor neuron 2, centromeric isoform a [H...
SMN2                  0.843   survival of motor neuron 2, centromeric isoform b [H...
SMN1                  0.843   survival of motor neuron 1, telomeric isoform b [Hom...
SMN2                  0.785   survival of motor neuron 2, centromeric isoform c [H...
FMN1                  0.065   formin 1 
FMNL1                 0.061   formin-like 1 
DIAPH1                0.060   diaphanous 1 isoform 2 
DIAPH1                0.060   diaphanous 1 isoform 1 
SETD1B                0.058   SET domain containing 1B 
ZC3H4                 0.058   zinc finger CCCH-type containing 4 
SMNDC1                0.058   survival motor neuron domain containing 1 
FMN2                  0.058   formin 2 
ENAH                  0.056   enabled homolog isoform a 
ENAH                  0.056   enabled homolog isoform b 
DIAPH3                0.055   diaphanous homolog 3 isoform b 
DIAPH3                0.055   diaphanous homolog 3 isoform a 
INF2                  0.053   inverted formin 2 isoform 2 
INF2                  0.053   inverted formin 2 isoform 1 
WASL                  0.053   Wiskott-Aldrich syndrome gene-like protein 
SETD1A                0.053   SET domain containing 1A 
LOC645529             0.053   PREDICTED: similar to Putative acrosin-like proteas...
CCNK                  0.050   cyclin K isoform 1 
CPSF6                 0.050   cleavage and polyadenylation specific factor 6, 68 ...
WASF2                 0.050   WAS protein family, member 2 
ZFHX4                 0.050   zinc finger homeodomain 4 
PRR12                 0.048   proline rich 12 
DIAPH2                0.048   diaphanous 2 isoform 12C 
DIAPH2                0.048   diaphanous 2 isoform 156 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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