Guide to the Human Genome
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Name: FAM122C Sequence: fasta or formatted (152aa) NCBI GI: 20270387
Description:

hypothetical protein LOC159091

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          6           1
 C cysteine            0.7          1           1
 D aspartate           3.3          5           1
 E glutamate           5.3          8           2
 F phenylalanine       3.3          5           1
 G glycine             5.3          8           1
 H histidine           2.0          3           1
 I isoleucine          6.6         10           1
 K lysine              7.2         11           2
 L leucine            11.8         18           3
 M methionine          3.9          6           1
 N asparagine          5.9          9           1
 P proline             4.6          7           4
 Q glutamine           5.3          8           1
 R arginine            6.6         10           2
 S serine             14.5         22           3
 T threonine           5.9          9           2
 V valine              2.0          3           1
 W tryptophan          1.3          2           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC159091 
FAM122A               0.396   hypothetical protein LOC116224 
FAM122B               0.244   hypothetical protein LOC159090 
SLC25A17              0.018   solute carrier family 25 (mitochondrial carrier; pero...
LOC643677             0.015   hypothetical protein LOC643677 
LOC643677             0.015   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.015   PREDICTED: hypothetical protein LOC643677 
LOC643677             0.015   PREDICTED: hypothetical protein LOC643677 
APOO                  0.015   apolipoprotein O 
UTRN                  0.015   utrophin 
CHD6                  0.011   chromodomain helicase DNA binding protein 6 
RNF2                  0.007   ring finger protein 2 
MAGEL2                0.007   MAGE-like protein 2 
ROCK2                 0.007   Rho-associated, coiled-coil containing protein kinas...
RPAP3                 0.007   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.007   RNA polymerase II associated protein 3 isoform 1 [H...
KCNH2                 0.007   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.007   voltage-gated potassium channel, subfamily H, member ...
POTED                 0.007   pote protein 
TJP3                  0.007   tight junction protein 3 
CGNL1                 0.007   cingulin-like 1 
SLC41A2               0.007   solute carrier family 41, member 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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