Guide to the Human Genome
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Name: FAM122B Sequence: fasta or formatted (248aa) NCBI GI: 40255094
Description:

hypothetical protein LOC159090

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         11           2
 C cysteine            1.6          4           1
 D aspartate           6.5         16           2
 E glutamate           5.6         14           2
 F phenylalanine       3.2          8           1
 G glycine             5.2         13           2
 H histidine           1.2          3           1
 I isoleucine          2.8          7           1
 K lysine              4.4         11           1
 L leucine             9.7         24           1
 M methionine          4.0         10           1
 N asparagine          1.6          4           1
 P proline             8.9         22           2
 Q glutamine           4.0         10           1
 R arginine            6.9         17           2
 S serine             19.4         48           5
 T threonine           5.6         14           2
 V valine              3.2          8           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.2          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC159090 
FAM122A               0.582   hypothetical protein LOC116224 
FAM122C               0.144   hypothetical protein LOC159091 
RNF38                 0.026   ring finger protein 38 isoform 1 
RNF38                 0.026   ring finger protein 38 isoform 3 
PRDM2                 0.024   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.024   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.024   retinoblastoma protein-binding zinc finger protein i...
SRRM2                 0.021   splicing coactivator subunit SRm300 
FGF23                 0.021   fibroblast growth factor 23 precursor 
SMN2                  0.021   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.021   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.021   survival of motor neuron 1, telomeric isoform d [Homo...
HUWE1                 0.019   HECT, UBA and WWE domain containing 1 
ST5                   0.019   suppression of tumorigenicity 5 isoform 1 
ST5                   0.019   suppression of tumorigenicity 5 isoform 1 
SP8                   0.017   Sp8 transcription factor isoform 1 
SP8                   0.017   Sp8 transcription factor isoform 2 
TNRC18                0.017   trinucleotide repeat containing 18 
PNN                   0.017   pinin, desmosome associated protein 
SYN1                  0.017   synapsin I isoform Ia 
SYN1                  0.017   synapsin I isoform Ib 
CHD9                  0.017   chromodomain helicase DNA binding protein 9 
MUC17                 0.015   mucin 17 
GNAS                  0.015   GNAS complex locus alex 
MAP4                  0.015   microtubule-associated protein 4 isoform 5 
MAP4                  0.015   microtubule-associated protein 4 isoform 4 
MAP4                  0.015   microtubule-associated protein 4 isoform 2 
MAP4                  0.015   microtubule-associated protein 4 isoform 1 
LMO7                  0.015   LIM domain only 7 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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