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Search of human proteins with 40255016
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40255016 membrane-associated RING-CH protein IX [Homo
sapiens]
(346 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens] 722 0.0
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 399 e-111
gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo sa... 305 5e-83
gi|50539414 cellular modulator of immune recognition isoform 7 [... 72 1e-12
gi|50539412 cellular modulator of immune recognition isoform 6 [... 72 1e-12
gi|50539410 cellular modulator of immune recognition isoform 8 [... 72 1e-12
gi|8923613 membrane-associated RING-CH protein I [Homo sapiens] 70 3e-12
gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo sapi... 65 7e-11
gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2 ... 58 1e-08
gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 58 1e-08
gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1 ... 58 1e-08
gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo sapi... 49 7e-06
gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens] 44 3e-04
gi|30425428 deltex homolog 3 [Homo sapiens] 42 8e-04
gi|12383066 axotrophin [Homo sapiens] 41 0.001
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 40 0.002
gi|154937342 ring finger protein 190 [Homo sapiens] 39 0.005
gi|154937340 ring finger protein 190 [Homo sapiens] 39 0.005
gi|157311635 FAM83H [Homo sapiens] 38 0.015
gi|4504733 insulin receptor substrate 4 [Homo sapiens] 37 0.020
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 37 0.020
gi|26051273 voltage-gated potassium channel, subfamily H, member... 37 0.034
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 37 0.034
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.034
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 37 0.034
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 37 0.034
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 37 0.034
gi|30039694 zinc finger protein 598 [Homo sapiens] 37 0.034
gi|222144283 hypothetical protein LOC65998 [Homo sapiens] 36 0.044
gi|148886760 nanos homolog 3 [Homo sapiens] 36 0.044
>gi|40255016 membrane-associated RING-CH protein IX [Homo sapiens]
Length = 346
Score = 722 bits (1863), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG 60
MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG
Sbjct: 1 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYG 60
Query: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG 120
SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG
Sbjct: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQG 120
Query: 121 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI 180
ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI
Sbjct: 121 ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVI 180
Query: 181 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH 240
EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH
Sbjct: 181 EKVQIAAIVLGSLFLVASISWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIH 240
Query: 241 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP 300
EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP
Sbjct: 241 EGSSVYRIFKRWQAVNQQWKVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPP 300
Query: 301 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV 346
AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV
Sbjct: 301 AAQRMRTLLPQRCGYTILHLLGQLRPPDARSSSHSGREVVMRVTTV 346
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 399 bits (1025), Expect = e-111
Identities = 224/391 (57%), Positives = 250/391 (63%), Gaps = 62/391 (15%)
Query: 1 MLKSRLRMFLNELKLLVLTGGGRPRAEPQPRGGRGGGCGWA-----PFAGCSTRDGDGDE 55
+LK R RM N+LK+ +L RP P P G G A P G G
Sbjct: 37 LLKCRCRMLFNDLKVFLLR---RPPQAPLPMHGDPQPPGLAANNTLPALGAGGWAGWRGP 93
Query: 56 EEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPP--------------PGAL--------- 92
E G EP P+PPP PPLPP P +L
Sbjct: 94 REVVGREPP-------------PVPPP-PPLPPSSVEDDWGGPATEPPASLLSSASSDDF 139
Query: 93 ------DALSLSSSLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISE 146
D SL SSLDSG+RTP CRICFQGPEQGELLSPCRCDGSV+CTHQPCLI+WISE
Sbjct: 140 CKEKTEDRYSLGSSLDSGMRTPLCRICFQGPEQGELLSPCRCDGSVKCTHQPCLIKWISE 199
Query: 147 RGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWSS 206
RG WSCELCY+KY V+AISTKNPLQWQAISLTVIEKVQ+AA +LGSLFL+ASISWLIWS+
Sbjct: 200 RGCWSCELCYYKYHVIAISTKNPLQWQAISLTVIEKVQVAAAILGSLFLIASISWLIWST 259
Query: 207 LSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQWKVLNYDK 266
SPSA+WQRQDLLFQICYGMYGFMDVVCIGLIIHEG SVYRIFKRWQAVNQQWKVLNYDK
Sbjct: 260 FSPSARWQRQDLLFQICYGMYGFMDVVCIGLIIHEGPSVYRIFKRWQAVNQQWKVLNYDK 319
Query: 267 TKDIGGD-AGGGTAGKSGPRNSRTGPTS-GATSRPPAAQR---------MRTLLPQRCGY 315
TKD+ AGG T ++ P+S T+ PA ++ L C Y
Sbjct: 320 TKDLEDQKAGGRTNPRTSSSTQANIPSSEEETAGTPAPEQGPAQAAGHPSGPLSHHHCAY 379
Query: 316 TILHLLGQLRPPDARSSSHSGREVVMRVTTV 346
TILH+L LRP + RS S RE+VMRVTTV
Sbjct: 380 TILHILSHLRPHEQRSPPGSSRELVMRVTTV 410
>gi|156523244 membrane-associated ring finger (C3HC4) 11 [Homo
sapiens]
Length = 402
Score = 305 bits (780), Expect = 5e-83
Identities = 157/327 (48%), Positives = 203/327 (62%), Gaps = 28/327 (8%)
Query: 21 GGRPRAEPQPRGGRGG-GCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPL 79
G PR P+ +GG G A G R G GD+ E +G + RAG
Sbjct: 103 GEGPRRLPEAAAAKGGPGESEAGAGGERERRGAGDQPETRSVCSSRSSSSGGGDQRAGHQ 162
Query: 80 PPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPC 139
P+ C+ICFQG EQGELL+PCRCDGSVR THQ C
Sbjct: 163 HQHHQPI-----------------------CKICFQGAEQGELLNPCRCDGSVRYTHQLC 199
Query: 140 LIRWISERGSWSCELCYFKYQVLAISTKNPLQWQAISLTVIEKVQIAAIVLGSLFLVASI 199
L++WISERGSW+CELC ++Y V+AI K P QWQ+IS+T++EKVQ+ A++LGSLFL+AS+
Sbjct: 200 LLKWISERGSWTCELCCYRYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASV 259
Query: 200 SWLIWSSLSPSAKWQRQDLLFQICYGMYGFMDVVCIGLIIHEGSSVYRIFKRWQAVNQQW 259
+WL+WS+ SP A WQR+D+LFQICYGMYGFMD+VCIGLI+HEG++VYR+FKRW+AVN W
Sbjct: 260 TWLLWSAFSPYAVWQRKDILFQICYGMYGFMDLVCIGLIVHEGAAVYRVFKRWRAVNLHW 319
Query: 260 KVLNYDKTKDIGGDAGGGTAGKSGPRNSRTGPTSGATSRPPAAQRMRTLLPQRCGYTILH 319
VLNYDK DI + G+S + P + +R T +CGY +LH
Sbjct: 320 DVLNYDKATDI----EESSRGESSTSRTLWLPLTALRNRNLVHPTQLTSPRFQCGYVLLH 375
Query: 320 LLGQLRPPDARSSSHSGREVVMRVTTV 346
L ++RP + S +S EVVMRVT+V
Sbjct: 376 LFNRMRPHEDLSEDNSSGEVVMRVTSV 402
Score = 34.3 bits (77), Expect = 0.17
Identities = 17/28 (60%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 64 RARGL-AGDKEPRAGPLPPPAPPLPPPG 90
R RG +GD EP P PPP PP PPPG
Sbjct: 11 RCRGAESGDAEPPPQP-PPPPPPTPPPG 37
>gi|50539414 cellular modulator of immune recognition isoform 7
[Homo sapiens]
Length = 291
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 80 PPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQP 138
PP A P + S++ S CRIC +G ++ L++PC C GS+ HQ
Sbjct: 55 PPSASAPAPVSSFSRTSITPSSQD-----ICRICHCEGDDESPLITPCHCTGSLHFVHQA 109
Query: 139 CLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVA 197
CL +WI + CELC KY+ + + PL +W+ + +T E+ +I V + +
Sbjct: 110 CLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAIT 167
Query: 198 SISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFK 250
+ W ++ + +A+ +Q I + + + VV IG L ++ VY +++K
Sbjct: 168 CVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWK 227
Query: 251 RWQAVNQQWKVLNYDKT 267
R +A N+ V N +T
Sbjct: 228 RLKAYNRVIYVQNCPET 244
>gi|50539412 cellular modulator of immune recognition isoform 6
[Homo sapiens]
Length = 291
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 80 PPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQP 138
PP A P + S++ S CRIC +G ++ L++PC C GS+ HQ
Sbjct: 55 PPSASAPAPVSSFSRTSITPSSQD-----ICRICHCEGDDESPLITPCHCTGSLHFVHQA 109
Query: 139 CLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVA 197
CL +WI + CELC KY+ + + PL +W+ + +T E+ +I V + +
Sbjct: 110 CLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAIT 167
Query: 198 SISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFK 250
+ W ++ + +A+ +Q I + + + VV IG L ++ VY +++K
Sbjct: 168 CVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWK 227
Query: 251 RWQAVNQQWKVLNYDKT 267
R +A N+ V N +T
Sbjct: 228 RLKAYNRVIYVQNCPET 244
>gi|50539410 cellular modulator of immune recognition isoform 8
[Homo sapiens]
Length = 291
Score = 71.6 bits (174), Expect = 1e-12
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 16/197 (8%)
Query: 80 PPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICF-QGPEQGELLSPCRCDGSVRCTHQP 138
PP A P + S++ S CRIC +G ++ L++PC C GS+ HQ
Sbjct: 55 PPSASAPAPVSSFSRTSITPSSQD-----ICRICHCEGDDESPLITPCHCTGSLHFVHQA 109
Query: 139 CLIRWISERGSWSCELCYFKYQVLAISTKNPL-QWQAISLTVIEKVQIAAIVLGSLFLVA 197
CL +WI + CELC KY+ + + PL +W+ + +T E+ +I V + +
Sbjct: 110 CLQQWIKSSDTRCCELC--KYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAIT 167
Query: 198 SISWLIWSSLSPSAKWQRQDLLFQIC-YGMYGFMDVVCIG-----LIIHEGSSVY-RIFK 250
+ W ++ + +A+ +Q I + + + VV IG L ++ VY +++K
Sbjct: 168 CVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWK 227
Query: 251 RWQAVNQQWKVLNYDKT 267
R +A N+ V N +T
Sbjct: 228 RLKAYNRVIYVQNCPET 244
>gi|8923613 membrane-associated RING-CH protein I [Homo sapiens]
Length = 272
Score = 70.1 bits (170), Expect = 3e-12
Identities = 37/98 (37%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 110 CRICF-QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTKN 168
CRIC +G E+ L++PCRC G++R HQ CL +WI + CELC KY + +
Sbjct: 63 CRICHCEGDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELC--KYDFIMETKLK 120
Query: 169 PL-QWQAISLTVIEKVQIAAIVLGSLFLVASISWLIWS 205
PL +W+ + +T E+ +I V F V +I+ ++WS
Sbjct: 121 PLRKWEKLQMTTSERRKIFCSV---TFHVIAITCVVWS 155
>gi|30425370 membrane-associated ring finger (C3HC4) 3 [Homo
sapiens]
Length = 253
Score = 65.5 bits (158), Expect = 7e-11
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 108 PQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQV 161
P CRIC +G Q +LLSPC C G++ H+ CL W+S + CELC+F++ V
Sbjct: 69 PMCRICHEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAV 122
>gi|53729334 membrane-associated ring finger (C3HC4) 2 isoform 2
[Homo sapiens]
Length = 176
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 100 SLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
+LD+ P CRIC +G LLSPC C G++ H+ CL +W+S + CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 160 QV 161
V
Sbjct: 114 AV 115
>gi|53729332 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 100 SLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
+LD+ P CRIC +G LLSPC C G++ H+ CL +W+S + CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 160 QV 161
V
Sbjct: 114 AV 115
>gi|53729330 membrane-associated ring finger (C3HC4) 2 isoform 1
[Homo sapiens]
Length = 246
Score = 58.2 bits (139), Expect = 1e-08
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 100 SLDSGLRTPQCRICFQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
+LD+ P CRIC +G LLSPC C G++ H+ CL +W+S + CELC+ ++
Sbjct: 54 ALDTPSDGPFCRICHEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 160 QV 161
V
Sbjct: 114 AV 115
>gi|33589846 membrane-associated ring finger (C3HC4) 6 [Homo
sapiens]
Length = 910
Score = 48.9 bits (115), Expect = 7e-06
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 110 CRIC-FQGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKY 159
CR+C +G + L PC C GS++ HQ CL++W+ CELC ++
Sbjct: 9 CRVCRSEGTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRF 59
>gi|8923415 membrane-associated ring finger (C3HC4) 5 [Homo sapiens]
Length = 278
Score = 43.5 bits (101), Expect = 3e-04
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
Query: 110 CRICFQGPEQ---GELLSPCRCDGSVRCTHQPCLIRWISER------GSWSCELCYFKYQ 160
C +CF E E + PCRC GS + HQ CL RW+ E+ +C C +Y
Sbjct: 14 CWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNSTARVACPQCNAEYL 73
Query: 161 VL 162
++
Sbjct: 74 IV 75
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 42.0 bits (97), Expect = 8e-04
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 45 GCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSG 104
GC G G+ E + + P A P A LPPP PPLPPP L ++
Sbjct: 104 GCLALGGGGEHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPP-----LPPRLREEAE 158
Query: 105 LRTPQCRICFQGPEQGELLSPCR---CDGSV 132
+ C IC + + L CR C+G +
Sbjct: 159 EQESTCPICLGEIQNAKTLEKCRHSFCEGCI 189
>gi|12383066 axotrophin [Homo sapiens]
Length = 704
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 110 CRICFQGPEQGE--LLSPCRCDGSVRCTHQPCLIRWISER---GS-----WSCELCYFKY 159
CRIC L+ PC+C GS++ HQ C+ +W+ + GS +CELC K
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 160 QV 161
++
Sbjct: 612 EL 613
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 40.4 bits (93), Expect = 0.002
Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 33/85 (38%)
Query: 33 GRGGGCGWAPFAGC----STRDGDGDEEEYY---------------------GSEPRARG 67
GRG G GW P GC + DG+ DEEE+ G PR RG
Sbjct: 94 GRGRGRGWGPSRGCVPEEESSDGESDEEEFQGFHSDEDVAPSSLRSALRSQRGRAPRGRG 153
Query: 68 LAGDKEPRAGPLPPP----APPLPP 88
++ + PLPPP P PP
Sbjct: 154 ----RKHKTTPLPPPRLADVAPTPP 174
Score = 30.4 bits (67), Expect = 2.4
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 25/105 (23%)
Query: 10 LNELKLLVLTGGGRPRAEPQ----PRGGRGGGCGWAPFAGCSTRDGDGDEEEYY------ 59
+ +L L + +G G+ + E P+ G G G +P + D +EEE
Sbjct: 316 MGQLSLGLESGQGQGQHEESWQDVPQRRVGSGQGGSPCWKKQEQKLDDEEEEKKEEEEKD 375
Query: 60 --GSEPRARGLAGDKEPRAG-------------PLPPPAPPLPPP 89
G E R +A + P A P P P PPLPPP
Sbjct: 376 KEGEEKEERAVAEEMMPAAEKEEAKLPPPPLTPPAPSPPPPLPPP 420
Score = 29.3 bits (64), Expect = 5.4
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 78 PLPPPAPPLPP-PGALDALSLSSSLDSGLRTPQ 109
P PPPAPP PP P A + SS LR PQ
Sbjct: 619 PPPPPAPPPPPAPSPPPAPATSSRRPLLLRAPQ 651
>gi|154937342 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 110 CRIC--FQGPEQGELLSPCRCDGSVRCTHQPCLIRWISER--------GSWSCELC 155
CRIC G LL PC C GS++ HQ CL +W+ + +CE+C
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>gi|154937340 ring finger protein 190 [Homo sapiens]
Length = 808
Score = 39.3 bits (90), Expect = 0.005
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Query: 110 CRIC--FQGPEQGELLSPCRCDGSVRCTHQPCLIRWISER--------GSWSCELC 155
CRIC G LL PC C GS++ HQ CL +W+ + +CE+C
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMC 714
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 37.7 bits (86), Expect = 0.015
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 24 PRAEPQPRGGRGGGCG---W---APFAGCSTRDGDGD------EEEYYGSE---PRARGL 68
P AEP+ RGG G G W + +GC DG D E E Y + P R
Sbjct: 562 PEAEPERRGGPEGRAGLRRWRLASYLSGCHGEDGGDDGLPAPMEAEAYEDDVLAPGGRAP 621
Query: 69 AGDKEPRAGPLP---PPAPPLPPPGA 91
AGD P A +P P P+P PG+
Sbjct: 622 AGDLLPSAFRVPAAFPTKVPVPGPGS 647
>gi|4504733 insulin receptor substrate 4 [Homo sapiens]
Length = 1257
Score = 37.4 bits (85), Expect = 0.020
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 19 TGGGRPRAEPQPRGG---RGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPR 75
+GGG+ + GG GGG G G DGDG+ + L K+ +
Sbjct: 570 SGGGQGPGDGHGSGGGKNSGGGKGSGSGKGS---DGDGERGKSLKKRSYFGKLTQSKQQQ 626
Query: 76 AGPLPPPAPPLPPPG 90
P PPP PP PP G
Sbjct: 627 MPPPPPPPPPPPPAG 641
Score = 34.3 bits (77), Expect = 0.17
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 20 GGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPL 79
GG RP GG+G G G G ++ G G RG + K G L
Sbjct: 560 GGQRPGGGHGSGGGQGPGDGHGSGGGKNSGGGKGSGSGKGSDGDGERGKSLKKRSYFGKL 619
Query: 80 ---------PPPAPPLPPPGA 91
PPP PP PPP A
Sbjct: 620 TQSKQQQMPPPPPPPPPPPPA 640
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 37.4 bits (85), Expect = 0.020
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 20/89 (22%)
Query: 25 RAEPQPRGGRGGGCGWAPFAGCSTRD-------------GDGDEEEYYGSEPRARGLAGD 71
RA +PRG GG G G + G G +P A G++
Sbjct: 52 RARDKPRGSGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPGASGMS-- 109
Query: 72 KEPRAGPLPPPAPPLPPPGALDALSLSSS 100
PRA PLPPP PPPGA A SS+
Sbjct: 110 --PRASPLPPPP---PPPGAEPACPGSSA 133
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 36.6 bits (83), Expect = 0.034
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 20 GGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPL 79
G GR A P RG GG G +P +G S+ + DE S P R P
Sbjct: 569 GPGRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL----------RLVPF 618
Query: 80 PPPAPPLPPPG 90
P PP PPG
Sbjct: 619 SSPRPPGEPPG 629
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 36.6 bits (83), Expect = 0.034
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 20 GGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPL 79
G GR A P RG GG G +P +G S+ + DE S P R P
Sbjct: 909 GPGRAGAGPSSRGRPGGPWGESPSSGPSSPESSEDEGPGRSSSPL----------RLVPF 958
Query: 80 PPPAPPLPPPG 90
P PP PPG
Sbjct: 959 SSPRPPGEPPG 969
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.034
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPP 89
S+ +A AG P A PLPPPAPPLPPP
Sbjct: 379 SQSQADERAGTPPP-APPLPPPAPPLPPP 406
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 56 EEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPP 88
+E G+ P A L P A PLPPPAPPLPP
Sbjct: 384 DERAGTPPPAPPLP----PPAPPLPPPAPPLPP 412
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.034
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPP 89
S+ +A AG P A PLPPPAPPLPPP
Sbjct: 379 SQSQADERAGTPPP-APPLPPPAPPLPPP 406
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 56 EEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPP 88
+E G+ P A L P A PLPPPAPPLPP
Sbjct: 384 DERAGTPPPAPPLP----PPAPPLPPPAPPLPP 412
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 36.6 bits (83), Expect = 0.034
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 61 SEPRARGLAGDKEPRAGPLPPPAPPLPPP 89
S+ +A AG P A PLPPPAPPLPPP
Sbjct: 379 SQSQADERAGTPPP-APPLPPPAPPLPPP 406
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/33 (54%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 56 EEYYGSEPRARGLAGDKEPRAGPLPPPAPPLPP 88
+E G+ P A L P A PLPPPAPPLPP
Sbjct: 384 DERAGTPPPAPPLP----PPAPPLPPPAPPLPP 412
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 36.6 bits (83), Expect = 0.034
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 28 PQPRGGRGGGCGWAPFAGC--------STRDGDGDEEEYYGSEPRAR---------GLAG 70
P RG G G P GC S R G + + P + G A
Sbjct: 711 PLERGDAVAGWGGHPALGCPHPPEDDSSLRAERGSLADLPMAPPASAPPEFLDPLMGAAA 770
Query: 71 DKEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICFQGPEQGE 121
+ P GP P P PP PPP A + S S + +P + GP+ G+
Sbjct: 771 PQYPGRGPPPAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGD 821
Score = 35.4 bits (80), Expect = 0.076
Identities = 31/84 (36%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 4 SRLRMFLNELKLLVLTGGG--RPRAEPQPRGGRGGGCGWAPFAGCSTRDGDG-DEEEYYG 60
SRL + L L L G G RP E G GG G A G + DG+ DE+E
Sbjct: 1258 SRLSLALPPLTLTPFPGPGPRRPPWEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEED 1317
Query: 61 SEPRARGLA----GDKEPRAGPLP 80
E A G A G RA P+P
Sbjct: 1318 EEAAAPGAAAGPRGPGRARAAPVP 1341
Score = 32.0 bits (71), Expect = 0.84
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 22 GRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLPP 81
G + P P+ G G PF+ G G EE PR R +P A P PP
Sbjct: 809 GSGLSSPGPKPGDSGYETETPFSPEGAFPGGGAAEE--EGVPRPRAPPEPPDPGA-PRPP 865
Query: 82 PAP-PLPPPG 90
P P PLP PG
Sbjct: 866 PDPGPLPLPG 875
Score = 31.2 bits (69), Expect = 1.4
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 21 GGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPLP 80
GG PRA R G G G AP G T G G G + +A G + P+
Sbjct: 1125 GGAPRAPGAGRLDLGSG-GRAP-VGTGTAPGGGPGS---GVDAKA-GWVDNTRPQ----- 1173
Query: 81 PPAPPLPPP 89
PP PPLPPP
Sbjct: 1174 PPPPPLPPP 1182
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 36.6 bits (83), Expect = 0.034
Identities = 31/103 (30%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 19 TGGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRAR-----GLAGDKE 73
TG G+P + +G RGG G PF DG +E + P GLA +
Sbjct: 526 TGSGQPTRKAG-KGSRGGRKGGPPFTQEEEEDGGPALQELLSTRPTGSVSSTLGLASIQP 584
Query: 74 PRAGP------------LPPPAPPLPPPGALDALSLSSSLDSG 104
+ G LP P P PPGAL A +S G
Sbjct: 585 SKVGKKKKVGSEKPGTTLPQPPPATCPPGALQAPEAPASRAEG 627
Score = 30.4 bits (67), Expect = 2.4
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 21 GGRPRAEP-------QPRGGRGGGC--GWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGD 71
GGRP+ E PRG R G P ++ +G +E + + P A G G
Sbjct: 370 GGRPKKEEAAARGPEDPRGPRRSPRTQGEGPGPKETSTNGPVSQEAFSVTGPAAPGCVGV 429
Query: 72 KEPRAGPLPPPAPPLPPPGALDALSLSSSLDSGLRT 107
G LPPP+P L D SLS+S S T
Sbjct: 430 P----GALPPPSPKLKDE---DFPSLSASTSSSCST 458
>gi|222144283 hypothetical protein LOC65998 [Homo sapiens]
Length = 678
Score = 36.2 bits (82), Expect = 0.044
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 20 GGGRPRAEPQPRGGRGGGCGWAPFAGCSTRDGDGDEEEYYGSEPRARGLAGDKEPRAGPL 79
GGG EP+ G +P A R + +E+E G EP L P
Sbjct: 513 GGGDEEEEPEEEEEEWGDVPLSPGAPLE-RPAEEEEDEEDGQEPGGLAL---------PP 562
Query: 80 PPPAPPLPPP 89
PPP PP PPP
Sbjct: 563 PPPPPPPPPP 572
>gi|148886760 nanos homolog 3 [Homo sapiens]
Length = 192
Score = 36.2 bits (82), Expect = 0.044
Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 57 EYYGSEPRARGLAGDKEP--RAGPLPPPAPPLPPPGALDALSLSSSLDSGLRTPQCRICF 114
+Y G R L+G + P R P P P P L P AL+ + S+ Q R
Sbjct: 9 DYLGLAHLVRALSGKEGPETRLSPQPEPEPMLEPVSALEPMPAPESVPVPGPKDQKRSLE 68
Query: 115 QGPEQGELLSPCRCDGSVRCTHQPCLIRWISERGSWSCEL 154
P L S C+ +G R +Q +++ E G C +
Sbjct: 69 SSPAPERLCSFCKHNGESRAIYQSHVLK--DEAGRVLCPI 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,395,489
Number of Sequences: 37866
Number of extensions: 1009251
Number of successful extensions: 13259
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 312
Number of HSP's that attempted gapping in prelim test: 10336
Number of HSP's gapped (non-prelim): 2595
length of query: 346
length of database: 18,247,518
effective HSP length: 103
effective length of query: 243
effective length of database: 14,347,320
effective search space: 3486398760
effective search space used: 3486398760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.