Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: AGFG1 Sequence: fasta or formatted (562aa) NCBI GI: 38570132
Description:

HIV-1 Rev binding protein isoform 2

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [584aa] HIV-1 Rev binding protein isoform 1
alt prot [560aa] HIV-1 Rev binding protein isoform 3
alt prot [522aa] HIV-1 Rev binding protein isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         72           3
 C cysteine            0.9          5           1
 D aspartate           3.6         20           2
 E glutamate           2.1         12           2
 F phenylalanine       7.7         43           1
 G glycine             8.0         45           2
 H histidine           2.0         11           1
 I isoleucine          1.2          7           1
 K lysine              4.6         26           2
 L leucine             4.3         24           2
 M methionine          1.4          8           1
 N asparagine          5.0         28           1
 P proline             7.7         43           2
 Q glutamine           6.9         39           3
 R arginine            2.0         11           1
 S serine             14.6         82           3
 T threonine           8.0         45           2
 V valine              5.7         32           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HIV-1 Rev binding protein isoform 2 
AGFG1                 0.992   HIV-1 Rev binding protein isoform 3 
AGFG1                 0.977   HIV-1 Rev binding protein isoform 1 
AGFG1                 0.908   HIV-1 Rev binding protein isoform 4 
AGFG2                 0.246   ArfGAP with FG repeats 2 
NUP214                0.047   nucleoporin 214kDa 
SMAP1                 0.043   stromal membrane-associated GTPase-activating prote...
SMAP1                 0.042   stromal membrane-associated GTPase-activating protei...
SMAP2                 0.038   small ArfGAP2 
ADAP1                 0.037   centaurin, alpha 1 
ARFGAP1               0.036   ADP-ribosylation factor GTPase activating protein 1 i...
ARFGAP1               0.035   ADP-ribosylation factor GTPase activating protein 1 ...
MUC21                 0.034   mucin 21 
AGAP1                 0.031   centaurin, gamma 2 isoform 2 
AGAP1                 0.031   centaurin, gamma 2 isoform 1 
NUP153                0.029   nucleoporin 153kDa 
POM121C               0.028   POM121 membrane glycoprotein (rat)-like 
AGAP9                 0.027   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.027   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP7                 0.027   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP3                 0.027   centaurin, gamma 3 isoform a 
LOC100288540          0.027   PREDICTED: hypothetical protein XP_002342775 
AGAP11                0.027   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP6                 0.027   centaurin, gamma-like family, member 3 
AGAP4                 0.027   ArfGAP with GTPase domain, ankyrin repeat and PH do...
RBM14                 0.026   RNA binding motif protein 14 
ARFGAP3               0.026   ADP-ribosylation factor GTPase activating protein 3...
MUC4                  0.026   mucin 4 isoform a 
AMOT                  0.026   angiomotin isoform 2 
AMOT                  0.026   angiomotin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press